HEADER IMMUNE SYSTEM 30-SEP-11 3U1S TITLE CRYSTAL STRUCTURE OF HUMAN FAB PGT145, A BROADLY REACTIVE AND POTENT TITLE 2 HIV-1 NEUTRALIZING ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB PGT145 LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: FRAGMENT ANTIGEN BINDING; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FAB PGT145 HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 FRAGMENT: FRAGMENT ANTIGEN BINDING; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293T; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293T KEYWDS IGG, BROADLY NEUTRALIZING ANTIBODY, HIV-1 GP120, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.-P.JULIEN,D.DIWANJI,D.R.BURTON,I.A.WILSON REVDAT 5 06-NOV-24 3U1S 1 REMARK REVDAT 4 06-DEC-23 3U1S 1 REMARK REVDAT 3 13-SEP-23 3U1S 1 REMARK LINK REVDAT 2 21-DEC-11 3U1S 1 JRNL REVDAT 1 07-DEC-11 3U1S 0 JRNL AUTH J.S.MCLELLAN,M.PANCERA,C.CARRICO,J.GORMAN,J.P.JULIEN, JRNL AUTH 2 R.KHAYAT,R.LOUDER,R.PEJCHAL,M.SASTRY,K.DAI,S.O'DELL,N.PATEL, JRNL AUTH 3 S.SHAHZAD-UL-HUSSAN,Y.YANG,B.ZHANG,T.ZHOU,J.ZHU, JRNL AUTH 4 J.C.BOYINGTON,G.Y.CHUANG,D.DIWANJI,I.GEORGIEV,Y.DO KWON, JRNL AUTH 5 D.LEE,M.K.LOUDER,S.MOQUIN,S.D.SCHMIDT,Z.Y.YANG,M.BONSIGNORI, JRNL AUTH 6 J.A.CRUMP,S.H.KAPIGA,N.E.SAM,B.F.HAYNES,D.R.BURTON,W.C.KOFF, JRNL AUTH 7 L.M.WALKER,S.PHOGAT,R.WYATT,J.ORWENYO,L.X.WANG,J.ARTHOS, JRNL AUTH 8 C.A.BEWLEY,J.R.MASCOLA,G.J.NABEL,W.R.SCHIEF,A.B.WARD, JRNL AUTH 9 I.A.WILSON,P.D.KWONG JRNL TITL STRUCTURE OF HIV-1 GP120 V1/V2 DOMAIN WITH BROADLY JRNL TITL 2 NEUTRALIZING ANTIBODY PG9. JRNL REF NATURE V. 480 336 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 22113616 JRNL DOI 10.1038/NATURE10696 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1656 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2235 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3491 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.24000 REMARK 3 B22 (A**2) : 1.24000 REMARK 3 B33 (A**2) : -2.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.849 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3609 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4916 ; 1.217 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 6.303 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;36.475 ;24.126 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;14.652 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;22.396 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2694 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2266 ; 0.755 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3659 ; 1.443 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1343 ; 1.780 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1257 ; 2.977 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 2 L 213 REMARK 3 RESIDUE RANGE : L 215 L 219 REMARK 3 RESIDUE RANGE : L 220 L 365 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6412 38.0771 -18.4103 REMARK 3 T TENSOR REMARK 3 T11: 0.0267 T22: 0.0281 REMARK 3 T33: 0.0127 T12: -0.0008 REMARK 3 T13: 0.0007 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.0477 L22: 0.4454 REMARK 3 L33: 0.2861 L12: 0.0428 REMARK 3 L13: -0.0556 L23: -0.3350 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: 0.0056 S13: 0.0142 REMARK 3 S21: 0.0360 S22: 0.0044 S23: 0.0240 REMARK 3 S31: -0.0170 S32: -0.0104 S33: -0.0117 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 218 REMARK 3 RESIDUE RANGE : H 223 H 224 REMARK 3 RESIDUE RANGE : H 225 H 395 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9787 21.7270 -20.4163 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.0294 REMARK 3 T33: 0.0074 T12: -0.0021 REMARK 3 T13: -0.0010 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.1005 L22: 0.5106 REMARK 3 L33: 0.1839 L12: 0.1605 REMARK 3 L13: -0.0901 L23: -0.2769 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: -0.0193 S13: 0.0065 REMARK 3 S21: -0.0385 S22: -0.0068 S23: -0.0269 REMARK 3 S31: 0.0440 S32: 0.0200 S33: 0.0078 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3U1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03322 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32493 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.47200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MUG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 2 M AMMONIUM REMARK 280 SULFATE AND 20% PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.59200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.36500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.36500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.29600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.36500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.36500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.88800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.36500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.36500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.29600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.36500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.36500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.88800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.59200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET L -19 REMARK 465 ARG L -18 REMARK 465 LEU L -17 REMARK 465 PRO L -16 REMARK 465 ALA L -15 REMARK 465 GLN L -14 REMARK 465 LEU L -13 REMARK 465 LEU L -12 REMARK 465 GLY L -11 REMARK 465 LEU L -10 REMARK 465 LEU L -9 REMARK 465 MET L -8 REMARK 465 LEU L -7 REMARK 465 TRP L -6 REMARK 465 VAL L -5 REMARK 465 SER L -4 REMARK 465 GLY L -3 REMARK 465 SER L -2 REMARK 465 GLY L -1 REMARK 465 ALA L 0 REMARK 465 GLU L 1 REMARK 465 CYS L 214 REMARK 465 GLN H -22 REMARK 465 ALA H -21 REMARK 465 SER H -20 REMARK 465 THR H -19 REMARK 465 MET H -18 REMARK 465 ASP H -17 REMARK 465 TRP H -16 REMARK 465 ILE H -15 REMARK 465 TRP H -14 REMARK 465 ARG H -13 REMARK 465 ILE H -12 REMARK 465 LEU H -11 REMARK 465 PHE H -10 REMARK 465 LEU H -9 REMARK 465 VAL H -8 REMARK 465 ALA H -7 REMARK 465 ALA H -6 REMARK 465 ALA H -5 REMARK 465 THR H -4 REMARK 465 SER H -3 REMARK 465 ALA H -2 REMARK 465 HIS H -1 REMARK 465 SER H 0 REMARK 465 LYS H 219 REMARK 465 SER H 220 REMARK 465 CYS H 221 REMARK 465 ASP H 222 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL H 34 CB - CA - C ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 51 -38.36 74.08 REMARK 500 ASP H 106 -80.41 -109.63 REMARK 500 ASP H 149 64.86 67.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 224 DBREF 3U1S L -19 214 PDB 3U1S 3U1S -19 214 DBREF 3U1S H -22 222 PDB 3U1S 3U1S -22 222 SEQRES 1 L 239 MET ARG LEU PRO ALA GLN LEU LEU GLY LEU LEU MET LEU SEQRES 2 L 239 TRP VAL SER GLY SER GLY ALA GLU VAL VAL ILE THR GLN SEQRES 3 L 239 SER PRO LEU PHE LEU PRO VAL THR PRO GLY GLU ALA ALA SEQRES 4 L 239 SER LEU SER CYS LYS CYS SER HIS SER LEU GLN HIS SER SEQRES 5 L 239 THR GLY ALA ASN TYR LEU ALA TRP TYR LEU GLN ARG PRO SEQRES 6 L 239 GLY GLN THR PRO ARG LEU LEU ILE HIS LEU ALA THR HIS SEQRES 7 L 239 ARG ALA SER GLY VAL PRO ASP ARG PHE SER GLY SER GLY SEQRES 8 L 239 SER GLY THR ASP PHE THR LEU LYS ILE SER ARG VAL GLU SEQRES 9 L 239 SER ASP ASP VAL GLY THR TYR TYR CYS MET GLN GLY LEU SEQRES 10 L 239 HIS SER PRO TRP THR PHE GLY GLN GLY THR LYS VAL GLU SEQRES 11 L 239 ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 12 L 239 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 13 L 239 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 14 L 239 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 15 L 239 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 16 L 239 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 17 L 239 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 18 L 239 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 19 L 239 ASN ARG GLY GLU CYS SEQRES 1 H 267 GLN ALA SER THR MET ASP TRP ILE TRP ARG ILE LEU PHE SEQRES 2 H 267 LEU VAL ALA ALA ALA THR SER ALA HIS SER GLN VAL GLN SEQRES 3 H 267 LEU VAL GLN SER GLY ALA GLU VAL LYS LYS PRO GLY SER SEQRES 4 H 267 SER VAL LYS VAL SER CYS LYS ALA SER GLY ASN SER PHE SEQRES 5 H 267 SER ASN HIS ASP VAL HIS TRP VAL ARG GLN ALA THR GLY SEQRES 6 H 267 GLN GLY LEU GLU TRP MET GLY TRP MET SER HIS GLU GLY SEQRES 7 H 267 ASP LYS THR GLY LEU ALA GLN LYS PHE GLN GLY ARG VAL SEQRES 8 H 267 THR ILE THR ARG ASP SER GLY ALA SER THR VAL TYR MET SEQRES 9 H 267 GLU LEU ARG GLY LEU THR ALA ASP ASP THR ALA ILE TYR SEQRES 10 H 267 TYR CYS LEU THR GLY SER LYS HIS ARG LEU ARG ASP TYR SEQRES 11 H 267 PHE LEU TYS ASN GLU TYS GLY PRO ASN TYR GLU GLU TRP SEQRES 12 H 267 GLY ASP TYR LEU ALA THR LEU ASP VAL TRP GLY HIS GLY SEQRES 13 H 267 THR ALA VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 14 H 267 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 15 H 267 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 16 H 267 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 17 H 267 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 18 H 267 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 19 H 267 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 20 H 267 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 21 H 267 VAL GLU PRO LYS SER CYS ASP MODRES 3U1S TYS H 100F TYR O-SULFO-L-TYROSINE MODRES 3U1S TYS H 100I TYR O-SULFO-L-TYROSINE HET TYS H 100F 16 HET TYS H 100I 16 HET SO4 L 215 5 HET SO4 L 216 5 HET SO4 L 217 5 HET SO4 L 218 5 HET GOL L 219 6 HET SO4 H 223 5 HET SO4 H 224 5 HETNAM TYS O-SULFO-L-TYROSINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 TYS 2(C9 H11 N O6 S) FORMUL 3 SO4 6(O4 S 2-) FORMUL 7 GOL C3 H8 O3 FORMUL 10 HOH *313(H2 O) HELIX 1 1 GLU L 79 VAL L 83 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 GLU L 187 1 5 HELIX 4 4 GLY H 26 ASN H 31 5 6 HELIX 5 5 GLN H 59 GLN H 62 5 4 HELIX 6 6 SER H 73 SER H 76 5 4 HELIX 7 7 THR H 83 THR H 87 5 5 HELIX 8 8 SER H 132 LYS H 134 5 3 HELIX 9 9 SER H 161 ALA H 163 5 3 HELIX 10 10 SER H 192 THR H 196 5 5 HELIX 11 11 LYS H 206 ASN H 209 5 4 SHEET 1 A 4 ILE L 4 SER L 7 0 SHEET 2 A 4 ALA L 19 CYS L 25 -1 O SER L 22 N SER L 7 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 63 O LYS L 74 SHEET 1 B 6 PHE L 10 VAL L 13 0 SHEET 2 B 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 B 6 GLY L 84 GLN L 90 -1 N GLY L 84 O VAL L 104 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 B 6 ARG L 45 HIS L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 HIS L 53 ARG L 54 -1 O HIS L 53 N HIS L 49 SHEET 1 C 4 PHE L 10 VAL L 13 0 SHEET 2 C 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 C 4 GLY L 84 GLN L 90 -1 N GLY L 84 O VAL L 104 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 4 SER L 114 PHE L 118 0 SHEET 2 D 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 D 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 D 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 E 4 ALA L 153 LEU L 154 0 SHEET 2 E 4 ALA L 144 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 E 4 VAL L 191 HIS L 198 -1 O GLU L 195 N GLN L 147 SHEET 4 E 4 VAL L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 F 4 LEU H 4 GLN H 6 0 SHEET 2 F 4 VAL H 18 ALA H 24 -1 O LYS H 23 N VAL H 5 SHEET 3 F 4 VAL H 78 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 F 4 VAL H 65 ARG H 71 -1 N THR H 70 O TYR H 79 SHEET 1 G 6 GLU H 10 LYS H 12 0 SHEET 2 G 6 THR H 112 VAL H 116 1 O THR H 115 N LYS H 12 SHEET 3 G 6 ALA H 88 LEU H 100E-1 N TYR H 90 O THR H 112 SHEET 4 G 6 ASP H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 G 6 GLU H 46 MET H 51 -1 O MET H 48 N TRP H 36 SHEET 6 G 6 THR H 55 LEU H 57 -1 O GLY H 56 N TRP H 50 SHEET 1 H 4 GLU H 10 LYS H 12 0 SHEET 2 H 4 THR H 112 VAL H 116 1 O THR H 115 N LYS H 12 SHEET 3 H 4 ALA H 88 LEU H 100E-1 N TYR H 90 O THR H 112 SHEET 4 H 4 TYR H 100M TRP H 108 -1 O ASP H 106 N THR H 94 SHEET 1 I 4 SER H 125 LEU H 129 0 SHEET 2 I 4 THR H 140 TYR H 150 -1 O LEU H 146 N PHE H 127 SHEET 3 I 4 TYR H 181 PRO H 190 -1 O VAL H 189 N ALA H 141 SHEET 4 I 4 VAL H 168 THR H 170 -1 N HIS H 169 O VAL H 186 SHEET 1 J 4 THR H 136 SER H 137 0 SHEET 2 J 4 THR H 140 TYR H 150 -1 O THR H 140 N SER H 137 SHEET 3 J 4 TYR H 181 PRO H 190 -1 O VAL H 189 N ALA H 141 SHEET 4 J 4 VAL H 174 LEU H 175 -1 N VAL H 174 O SER H 182 SHEET 1 K 3 THR H 156 TRP H 159 0 SHEET 2 K 3 ILE H 200 HIS H 205 -1 O ASN H 202 N SER H 158 SHEET 3 K 3 THR H 210 LYS H 215 -1 O VAL H 212 N VAL H 203 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.11 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 4 CYS H 145 CYS H 201 1555 1555 2.06 LINK C TYS H 100F N ASN H 100G 1555 1555 1.33 LINK C TYS H 100I N GLY H 100J 1555 1555 1.33 CISPEP 1 SER L 7 PRO L 8 0 -5.44 CISPEP 2 SER L 94 PRO L 95 0 1.01 CISPEP 3 TYR L 140 PRO L 141 0 3.73 CISPEP 4 PHE H 151 PRO H 152 0 -8.69 CISPEP 5 GLU H 153 PRO H 154 0 3.05 SITE 1 AC1 2 ARG L 39 ARG L 45 SITE 1 AC2 4 ARG L 54 HOH L 221 HOH L 258 HOH L 279 SITE 1 AC3 5 SER H 133 LYS H 134 LYS L 188 LYS L 207 SITE 2 AC3 5 HOH L 315 SITE 1 AC4 5 GLY L 41 GLN L 42 THR L 43 ARG L 45 SITE 2 AC4 5 HOH L 294 SITE 1 AC5 2 LEU L 9 PHE L 10 SITE 1 AC6 5 ARG H 71 ASP H 72 SER H 73 GLY H 74 SITE 2 AC6 5 ALA H 75 SITE 1 AC7 5 HIS H 52A GLU H 52B LYS H 97 ARG H 99 SITE 2 AC7 5 HOH H 305 CRYST1 118.730 118.730 101.184 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008422 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009883 0.00000