data_3U1U # _entry.id 3U1U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3U1U RCSB RCSB068199 WWPDB D_1000068199 # _pdbx_database_status.entry_id 3U1U _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-30 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Guo, Y.' 1 'Tempel, W.' 2 'Bian, C.' 3 'Wernimont, A.K.' 4 'Bountra, C.' 5 'Weigelt, J.' 6 'Arrowsmith, C.H.' 7 'Edwards, A.M.' 8 'Min, J.' 9 'Structural Genomics Consortium (SGC)' 10 # _citation.id primary _citation.title 'Crystal structure of RNA polymerase-associated protein RTF1 homolog Plus-3 domain' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Guo, Y.' 1 primary 'Tempel, W.' 2 primary 'Bian, C.' 3 primary 'Wernimont, A.K.' 4 primary 'Bountra, C.' 5 primary 'Weigelt, J.' 6 primary 'Arrowsmith, C.H.' 7 primary 'Edwards, A.M.' 8 primary 'Min, J.' 9 # _cell.entry_id 3U1U _cell.length_a 47.479 _cell.length_b 50.369 _cell.length_c 69.776 _cell.angle_alpha 90.00 _cell.angle_beta 103.37 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U1U _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA polymerase-associated protein RTF1 homolog' 15917.687 2 ? ? 'unp residues 347-482' ? 2 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn 'UNKNOWN ATOM OR ION' ? 23 ? ? ? ? 5 water nat water 18.015 103 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPPKSQPVSLPEELNRVRLSRHKLERWCH(MSE)PFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTR TNKGLQLRHGNDQRVFRLEFVSNQEFTESEF(MSE)KWKEA(MSE)FSAG(MSE)QLPTLDEINKKELSIKEA ; _entity_poly.pdbx_seq_one_letter_code_can ;GPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKG LQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 PRO n 1 4 LYS n 1 5 SER n 1 6 GLN n 1 7 PRO n 1 8 VAL n 1 9 SER n 1 10 LEU n 1 11 PRO n 1 12 GLU n 1 13 GLU n 1 14 LEU n 1 15 ASN n 1 16 ARG n 1 17 VAL n 1 18 ARG n 1 19 LEU n 1 20 SER n 1 21 ARG n 1 22 HIS n 1 23 LYS n 1 24 LEU n 1 25 GLU n 1 26 ARG n 1 27 TRP n 1 28 CYS n 1 29 HIS n 1 30 MSE n 1 31 PRO n 1 32 PHE n 1 33 PHE n 1 34 ALA n 1 35 LYS n 1 36 THR n 1 37 VAL n 1 38 THR n 1 39 GLY n 1 40 CYS n 1 41 PHE n 1 42 VAL n 1 43 ARG n 1 44 ILE n 1 45 GLY n 1 46 ILE n 1 47 GLY n 1 48 ASN n 1 49 HIS n 1 50 ASN n 1 51 SER n 1 52 LYS n 1 53 PRO n 1 54 VAL n 1 55 TYR n 1 56 ARG n 1 57 VAL n 1 58 ALA n 1 59 GLU n 1 60 ILE n 1 61 THR n 1 62 GLY n 1 63 VAL n 1 64 VAL n 1 65 GLU n 1 66 THR n 1 67 ALA n 1 68 LYS n 1 69 VAL n 1 70 TYR n 1 71 GLN n 1 72 LEU n 1 73 GLY n 1 74 GLY n 1 75 THR n 1 76 ARG n 1 77 THR n 1 78 ASN n 1 79 LYS n 1 80 GLY n 1 81 LEU n 1 82 GLN n 1 83 LEU n 1 84 ARG n 1 85 HIS n 1 86 GLY n 1 87 ASN n 1 88 ASP n 1 89 GLN n 1 90 ARG n 1 91 VAL n 1 92 PHE n 1 93 ARG n 1 94 LEU n 1 95 GLU n 1 96 PHE n 1 97 VAL n 1 98 SER n 1 99 ASN n 1 100 GLN n 1 101 GLU n 1 102 PHE n 1 103 THR n 1 104 GLU n 1 105 SER n 1 106 GLU n 1 107 PHE n 1 108 MSE n 1 109 LYS n 1 110 TRP n 1 111 LYS n 1 112 GLU n 1 113 ALA n 1 114 MSE n 1 115 PHE n 1 116 SER n 1 117 ALA n 1 118 GLY n 1 119 MSE n 1 120 GLN n 1 121 LEU n 1 122 PRO n 1 123 THR n 1 124 LEU n 1 125 ASP n 1 126 GLU n 1 127 ILE n 1 128 ASN n 1 129 LYS n 1 130 LYS n 1 131 GLU n 1 132 LEU n 1 133 SER n 1 134 ILE n 1 135 LYS n 1 136 GLU n 1 137 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'RTF1, KIAA0252' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-V2R-pRARE2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RTF1_HUMAN _struct_ref.pdbx_db_accession Q92541 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGL QLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEA ; _struct_ref.pdbx_align_begin 347 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3U1U A 2 ? 137 ? Q92541 347 ? 482 ? 347 482 2 1 3U1U B 2 ? 137 ? Q92541 347 ? 482 ? 347 482 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3U1U GLY A 1 ? UNP Q92541 ? ? 'EXPRESSION TAG' 346 1 2 3U1U GLY B 1 ? UNP Q92541 ? ? 'EXPRESSION TAG' 346 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3U1U _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 53.8 _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'sitting drop vapor diffusion' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '25% PEG-3350, 0.2M ammonium sulfate, 0.1M sodium cacodylate, pH 5.5, sitting drop vapor diffusion, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id xds 100 ? 1 1 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS' _diffrn_detector.pdbx_collection_date 2011-08-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'Rigaku FR-E' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 1.80 _reflns.number_all 29993 _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.pdbx_netI_over_sigmaI 18.0335 _reflns.percent_possible_obs 99.86 _reflns.pdbx_redundancy 7.20 _reflns.entry_id 3U1U _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_obs 29882 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_measured_all _reflns_shell.number_unique_all _reflns_shell.Rmerge_I_obs _reflns_shell.percent_possible_all _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.90 1.80 30390 4298 0.89 99.51 7.07 ? ? ? ? ? ? 1 1 2.01 1.90 29061 4085 0.53 99.78 7.11 ? ? ? ? ? ? 2 1 2.15 2.01 27731 3877 0.34 99.93 7.15 ? ? ? ? ? ? 3 1 2.32 2.15 26106 3621 0.20 99.99 7.21 ? ? ? ? ? ? 4 1 2.55 2.32 24001 3294 0.13 100.00 7.29 ? ? ? ? ? ? 5 1 2.85 2.55 22128 3016 0.09 100.00 7.34 ? ? ? ? ? ? 6 1 3.29 2.85 19598 2670 0.05 100.00 7.34 ? ? ? ? ? ? 7 1 4.02 3.29 16344 2256 0.04 100.00 7.24 ? ? ? ? ? ? 8 1 5.69 4.02 12882 1773 0.03 100.00 7.27 ? ? ? ? ? ? 9 1 30.00 5.69 7002 992 0.02 99.16 7.06 ? ? ? ? ? ? 10 1 # _refine.entry_id 3U1U _refine.ls_d_res_high 1.8000 _refine.ls_d_res_low 28.5400 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7800 _refine.ls_number_reflns_obs 29857 _refine.ls_number_reflns_all 29923 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details 'THIN SHELLS (SFTOOLS)' _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED. The second data set attached is based on the same diffraction images as the refinement amplitudes but was processed in HKL3000 and used for SAD phasing. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2036 _refine.ls_R_factor_R_work 0.2018 _refine.ls_wR_factor_R_work 0.1890 _refine.ls_R_factor_R_free 0.2349 _refine.ls_wR_factor_R_free 0.2240 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1513 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 27.0878 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.7800 _refine.aniso_B[2][2] 0.2700 _refine.aniso_B[3][3] -1.3300 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.6000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9480 _refine.correlation_coeff_Fo_to_Fc_free 0.9340 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.1220 _refine.overall_SU_ML 0.0960 _refine.overall_SU_B 6.9510 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 70.120 _refine.B_iso_min 12.620 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2071 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 103 _refine_hist.number_atoms_total 2223 _refine_hist.d_res_high 1.8000 _refine_hist.d_res_low 28.5400 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2226 0.014 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1576 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3015 1.355 1.955 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3813 0.881 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 279 6.132 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 107 35.349 22.897 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 396 12.591 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 22 18.832 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 326 0.078 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2462 0.005 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 484 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1336 0.683 1.500 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 542 0.192 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 2167 1.193 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 890 2.146 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 839 3.398 4.500 ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 1.847 1.800 2162 99.167 2128 0.281 16 0.327 . . . . . 'X-RAY DIFFRACTION' 20 1.897 1.847 2150 99.302 2135 0.272 0 . . . . . . 'X-RAY DIFFRACTION' 20 1.952 1.897 2077 99.519 1787 0.246 280 0.285 . . . . . 'X-RAY DIFFRACTION' 20 2.011 1.952 2010 99.652 2003 0.213 0 . . . . . . 'X-RAY DIFFRACTION' 20 2.077 2.011 1984 99.647 1747 0.206 230 0.240 . . . . . 'X-RAY DIFFRACTION' 20 2.150 2.077 1896 99.947 1895 0.194 0 . . . . . . 'X-RAY DIFFRACTION' 20 2.230 2.150 1799 99.944 1778 0.190 20 0.196 . . . . . 'X-RAY DIFFRACTION' 20 2.321 2.230 1792 99.944 1594 0.178 197 0.224 . . . . . 'X-RAY DIFFRACTION' 20 2.423 2.321 1673 99.940 1666 0.195 6 0.178 . . . . . 'X-RAY DIFFRACTION' 20 2.540 2.423 1622 99.938 1455 0.192 166 0.230 . . . . . 'X-RAY DIFFRACTION' 20 2.677 2.540 1553 99.936 1413 0.193 139 0.234 . . . . . 'X-RAY DIFFRACTION' 20 2.838 2.677 1449 100.000 1449 0.200 0 . . . . . . 'X-RAY DIFFRACTION' 20 3.031 2.838 1384 99.928 1256 0.196 127 0.256 . . . . . 'X-RAY DIFFRACTION' 20 3.271 3.031 1279 100.000 1279 0.200 0 . . . . . . 'X-RAY DIFFRACTION' 20 3.579 3.271 1204 100.000 1099 0.189 105 0.229 . . . . . 'X-RAY DIFFRACTION' 20 3.993 3.579 1066 99.906 997 0.178 68 0.181 . . . . . 'X-RAY DIFFRACTION' 20 4.596 3.993 965 100.000 904 0.166 61 0.198 . . . . . 'X-RAY DIFFRACTION' 20 5.593 4.596 813 100.000 773 0.193 40 0.233 . . . . . 'X-RAY DIFFRACTION' 20 7.762 5.593 651 99.846 621 0.264 29 0.307 . . . . . 'X-RAY DIFFRACTION' 20 28.544 7.762 395 99.747 365 0.267 29 0.344 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3U1U _struct.title 'Crystal structure of RNA polymerase-associated protein RTF1 homolog Plus-3 domain' _struct.pdbx_descriptor 'RNA polymerase-associated protein RTF1 homolog' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U1U _struct_keywords.text 'PLUS-3, transcription elongation, Structural Genomics, Structural Genomics Consortium, SGC, transcription' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? S N N 4 ? T N N 2 ? U N N 2 ? V N N 4 ? W N N 4 ? X N N 4 ? Y N N 4 ? Z N N 4 ? AA N N 4 ? BA N N 4 ? CA N N 4 ? DA N N 4 ? EA N N 5 ? FA N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 10 ? ARG A 16 ? LEU A 355 ARG A 361 1 ? 7 HELX_P HELX_P2 2 SER A 20 ? CYS A 28 ? SER A 365 CYS A 373 1 ? 9 HELX_P HELX_P3 3 PHE A 32 ? THR A 38 ? PHE A 377 THR A 383 1 ? 7 HELX_P HELX_P4 4 GLU A 95 ? VAL A 97 ? GLU A 440 VAL A 442 5 ? 3 HELX_P HELX_P5 5 THR A 103 ? GLY A 118 ? THR A 448 GLY A 463 1 ? 16 HELX_P HELX_P6 6 THR A 123 ? ILE A 134 ? THR A 468 ILE A 479 1 ? 12 HELX_P HELX_P7 7 LEU B 10 ? ASN B 15 ? LEU B 355 ASN B 360 1 ? 6 HELX_P HELX_P8 8 ARG B 16 ? ARG B 18 ? ARG B 361 ARG B 363 5 ? 3 HELX_P HELX_P9 9 SER B 20 ? CYS B 28 ? SER B 365 CYS B 373 1 ? 9 HELX_P HELX_P10 10 PHE B 32 ? THR B 38 ? PHE B 377 THR B 383 1 ? 7 HELX_P HELX_P11 11 GLU B 95 ? VAL B 97 ? GLU B 440 VAL B 442 5 ? 3 HELX_P HELX_P12 12 THR B 103 ? ALA B 117 ? THR B 448 ALA B 462 1 ? 15 HELX_P HELX_P13 13 THR B 123 ? ILE B 134 ? THR B 468 ILE B 479 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 29 C ? ? ? 1_555 A MSE 30 N ? ? A HIS 374 A MSE 375 1_555 ? ? ? ? ? ? ? 1.315 ? covale2 covale ? ? A MSE 30 C ? ? ? 1_555 A PRO 31 N ? ? A MSE 375 A PRO 376 1_555 ? ? ? ? ? ? ? 1.345 ? covale3 covale ? ? A PHE 107 C ? ? ? 1_555 A MSE 108 N ? ? A PHE 452 A MSE 453 1_555 ? ? ? ? ? ? ? 1.310 ? covale4 covale ? ? A MSE 108 C ? ? ? 1_555 A LYS 109 N ? ? A MSE 453 A LYS 454 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale ? ? A ALA 113 C ? ? ? 1_555 A MSE 114 N ? ? A ALA 458 A MSE 459 1_555 ? ? ? ? ? ? ? 1.334 ? covale6 covale ? ? A MSE 114 C ? ? ? 1_555 A PHE 115 N ? ? A MSE 459 A PHE 460 1_555 ? ? ? ? ? ? ? 1.323 ? covale7 covale ? ? A GLY 118 C ? ? ? 1_555 A MSE 119 N ? ? A GLY 463 A MSE 464 1_555 ? ? ? ? ? ? ? 1.319 ? covale8 covale ? ? A MSE 119 C ? ? ? 1_555 A GLN 120 N ? ? A MSE 464 A GLN 465 1_555 ? ? ? ? ? ? ? 1.315 ? covale9 covale ? ? B HIS 29 C ? ? ? 1_555 B MSE 30 N ? ? B HIS 374 B MSE 375 1_555 ? ? ? ? ? ? ? 1.334 ? covale10 covale ? ? B MSE 30 C ? ? ? 1_555 B PRO 31 N A ? B MSE 375 B PRO 376 1_555 ? ? ? ? ? ? ? 1.343 ? covale11 covale ? ? B MSE 30 C ? ? ? 1_555 B PRO 31 N B ? B MSE 375 B PRO 376 1_555 ? ? ? ? ? ? ? 1.344 ? covale12 covale ? ? B PHE 107 C ? ? ? 1_555 B MSE 108 N ? ? B PHE 452 B MSE 453 1_555 ? ? ? ? ? ? ? 1.328 ? covale13 covale ? ? B MSE 108 C ? ? ? 1_555 B LYS 109 N ? ? B MSE 453 B LYS 454 1_555 ? ? ? ? ? ? ? 1.333 ? covale14 covale ? ? B ALA 113 C ? ? ? 1_555 B MSE 114 N ? ? B ALA 458 B MSE 459 1_555 ? ? ? ? ? ? ? 1.333 ? covale15 covale ? ? B MSE 114 C ? ? ? 1_555 B PHE 115 N ? ? B MSE 459 B PHE 460 1_555 ? ? ? ? ? ? ? 1.325 ? covale16 covale ? ? B GLY 118 C ? ? ? 1_555 B MSE 119 N ? ? B GLY 463 B MSE 464 1_555 ? ? ? ? ? ? ? 1.342 ? covale17 covale ? ? B MSE 119 C ? ? ? 1_555 B GLN 120 N ? ? B MSE 464 B GLN 465 1_555 ? ? ? ? ? ? ? 1.333 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 41 ? GLY A 47 ? PHE A 386 GLY A 392 A 2 VAL A 54 ? LEU A 72 ? VAL A 399 LEU A 417 A 3 THR A 75 ? HIS A 85 ? THR A 420 HIS A 430 A 4 ASP A 88 ? ARG A 93 ? ASP A 433 ARG A 438 B 1 PHE B 41 ? GLY B 47 ? PHE B 386 GLY B 392 B 2 VAL B 54 ? LEU B 72 ? VAL B 399 LEU B 417 B 3 THR B 75 ? HIS B 85 ? THR B 420 HIS B 430 B 4 ASP B 88 ? ARG B 93 ? ASP B 433 ARG B 438 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 47 ? N GLY A 392 O VAL A 54 ? O VAL A 399 A 2 3 N THR A 61 ? N THR A 406 O GLN A 82 ? O GLN A 427 A 3 4 N LEU A 83 ? N LEU A 428 O ARG A 90 ? O ARG A 435 B 1 2 N ILE B 44 ? N ILE B 389 O ARG B 56 ? O ARG B 401 B 2 3 N THR B 66 ? N THR B 411 O ASN B 78 ? O ASN B 423 B 3 4 N LEU B 81 ? N LEU B 426 O PHE B 92 ? O PHE B 437 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 500' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 501' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 502' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 B 500' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 B 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HIS A 29 ? HIS A 374 . ? 1_555 ? 2 AC1 7 THR A 75 ? THR A 420 . ? 1_555 ? 3 AC1 7 HOH EA . ? HOH A 620 . ? 1_555 ? 4 AC1 7 THR B 66 ? THR B 411 . ? 1_555 ? 5 AC1 7 ALA B 67 ? ALA B 412 . ? 1_555 ? 6 AC1 7 LYS B 68 ? LYS B 413 . ? 1_555 ? 7 AC1 7 ARG B 93 ? ARG B 438 . ? 1_555 ? 8 AC2 3 HIS A 29 ? HIS A 374 . ? 1_555 ? 9 AC2 3 THR A 77 ? THR A 422 . ? 1_555 ? 10 AC2 3 ASN A 78 ? ASN A 423 . ? 1_555 ? 11 AC3 6 PHE A 115 ? PHE A 460 . ? 1_555 ? 12 AC3 6 GLY A 118 ? GLY A 463 . ? 1_555 ? 13 AC3 6 MSE A 119 ? MSE A 464 . ? 1_555 ? 14 AC3 6 GLN A 120 ? GLN A 465 . ? 1_555 ? 15 AC3 6 HOH EA . ? HOH A 621 . ? 1_555 ? 16 AC3 6 HOH EA . ? HOH A 630 . ? 1_555 ? 17 AC4 5 SER B 5 ? SER B 350 . ? 1_455 ? 18 AC4 5 TYR B 70 ? TYR B 415 . ? 1_555 ? 19 AC4 5 GLN B 71 ? GLN B 416 . ? 1_555 ? 20 AC4 5 ARG B 76 ? ARG B 421 . ? 1_555 ? 21 AC4 5 HOH FA . ? HOH B 612 . ? 1_555 ? 22 AC5 5 ARG A 21 ? ARG A 366 . ? 1_555 ? 23 AC5 5 ILE B 46 ? ILE B 391 . ? 1_555 ? 24 AC5 5 ARG B 56 ? ARG B 401 . ? 1_555 ? 25 AC5 5 ARG B 90 ? ARG B 435 . ? 1_555 ? 26 AC5 5 HOH FA . ? HOH B 621 . ? 1_555 ? # _atom_sites.entry_id 3U1U _atom_sites.fract_transf_matrix[1][1] 0.021062 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005006 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019853 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014731 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 346 ? ? ? A . n A 1 2 PRO 2 347 ? ? ? A . n A 1 3 PRO 3 348 348 PRO PRO A . n A 1 4 LYS 4 349 349 LYS LYS A . n A 1 5 SER 5 350 350 SER SER A . n A 1 6 GLN 6 351 351 GLN GLN A . n A 1 7 PRO 7 352 352 PRO PRO A . n A 1 8 VAL 8 353 353 VAL VAL A . n A 1 9 SER 9 354 354 SER SER A . n A 1 10 LEU 10 355 355 LEU LEU A . n A 1 11 PRO 11 356 356 PRO PRO A . n A 1 12 GLU 12 357 357 GLU GLU A . n A 1 13 GLU 13 358 358 GLU GLU A . n A 1 14 LEU 14 359 359 LEU LEU A . n A 1 15 ASN 15 360 360 ASN ASN A . n A 1 16 ARG 16 361 361 ARG ARG A . n A 1 17 VAL 17 362 362 VAL VAL A . n A 1 18 ARG 18 363 363 ARG ARG A . n A 1 19 LEU 19 364 364 LEU LEU A . n A 1 20 SER 20 365 365 SER SER A . n A 1 21 ARG 21 366 366 ARG ARG A . n A 1 22 HIS 22 367 367 HIS HIS A . n A 1 23 LYS 23 368 368 LYS LYS A . n A 1 24 LEU 24 369 369 LEU LEU A . n A 1 25 GLU 25 370 370 GLU GLU A . n A 1 26 ARG 26 371 371 ARG ARG A . n A 1 27 TRP 27 372 372 TRP TRP A . n A 1 28 CYS 28 373 373 CYS CYS A . n A 1 29 HIS 29 374 374 HIS HIS A . n A 1 30 MSE 30 375 375 MSE MSE A . n A 1 31 PRO 31 376 376 PRO PRO A . n A 1 32 PHE 32 377 377 PHE PHE A . n A 1 33 PHE 33 378 378 PHE PHE A . n A 1 34 ALA 34 379 379 ALA ALA A . n A 1 35 LYS 35 380 380 LYS LYS A . n A 1 36 THR 36 381 381 THR THR A . n A 1 37 VAL 37 382 382 VAL VAL A . n A 1 38 THR 38 383 383 THR THR A . n A 1 39 GLY 39 384 384 GLY GLY A . n A 1 40 CYS 40 385 385 CYS CYS A . n A 1 41 PHE 41 386 386 PHE PHE A . n A 1 42 VAL 42 387 387 VAL VAL A . n A 1 43 ARG 43 388 388 ARG ARG A . n A 1 44 ILE 44 389 389 ILE ILE A . n A 1 45 GLY 45 390 390 GLY GLY A . n A 1 46 ILE 46 391 391 ILE ILE A . n A 1 47 GLY 47 392 392 GLY GLY A . n A 1 48 ASN 48 393 393 ASN ASN A . n A 1 49 HIS 49 394 ? ? ? A . n A 1 50 ASN 50 395 ? ? ? A . n A 1 51 SER 51 396 ? ? ? A . n A 1 52 LYS 52 397 ? ? ? A . n A 1 53 PRO 53 398 398 PRO PRO A . n A 1 54 VAL 54 399 399 VAL VAL A . n A 1 55 TYR 55 400 400 TYR TYR A . n A 1 56 ARG 56 401 401 ARG ARG A . n A 1 57 VAL 57 402 402 VAL VAL A . n A 1 58 ALA 58 403 403 ALA ALA A . n A 1 59 GLU 59 404 404 GLU GLU A . n A 1 60 ILE 60 405 405 ILE ILE A . n A 1 61 THR 61 406 406 THR THR A . n A 1 62 GLY 62 407 407 GLY GLY A . n A 1 63 VAL 63 408 408 VAL VAL A . n A 1 64 VAL 64 409 409 VAL VAL A . n A 1 65 GLU 65 410 410 GLU GLU A . n A 1 66 THR 66 411 411 THR THR A . n A 1 67 ALA 67 412 412 ALA ALA A . n A 1 68 LYS 68 413 413 LYS LYS A . n A 1 69 VAL 69 414 414 VAL VAL A . n A 1 70 TYR 70 415 415 TYR TYR A . n A 1 71 GLN 71 416 416 GLN GLN A . n A 1 72 LEU 72 417 417 LEU LEU A . n A 1 73 GLY 73 418 418 GLY GLY A . n A 1 74 GLY 74 419 419 GLY GLY A . n A 1 75 THR 75 420 420 THR THR A . n A 1 76 ARG 76 421 421 ARG ARG A . n A 1 77 THR 77 422 422 THR THR A . n A 1 78 ASN 78 423 423 ASN ASN A . n A 1 79 LYS 79 424 424 LYS LYS A . n A 1 80 GLY 80 425 425 GLY GLY A . n A 1 81 LEU 81 426 426 LEU LEU A . n A 1 82 GLN 82 427 427 GLN GLN A . n A 1 83 LEU 83 428 428 LEU LEU A . n A 1 84 ARG 84 429 429 ARG ARG A . n A 1 85 HIS 85 430 430 HIS HIS A . n A 1 86 GLY 86 431 431 GLY GLY A . n A 1 87 ASN 87 432 432 ASN ASN A . n A 1 88 ASP 88 433 433 ASP ASP A . n A 1 89 GLN 89 434 434 GLN GLN A . n A 1 90 ARG 90 435 435 ARG ARG A . n A 1 91 VAL 91 436 436 VAL VAL A . n A 1 92 PHE 92 437 437 PHE PHE A . n A 1 93 ARG 93 438 438 ARG ARG A . n A 1 94 LEU 94 439 439 LEU LEU A . n A 1 95 GLU 95 440 440 GLU GLU A . n A 1 96 PHE 96 441 441 PHE PHE A . n A 1 97 VAL 97 442 442 VAL VAL A . n A 1 98 SER 98 443 443 SER SER A . n A 1 99 ASN 99 444 444 ASN ASN A . n A 1 100 GLN 100 445 445 GLN GLN A . n A 1 101 GLU 101 446 446 GLU GLU A . n A 1 102 PHE 102 447 447 PHE PHE A . n A 1 103 THR 103 448 448 THR THR A . n A 1 104 GLU 104 449 449 GLU GLU A . n A 1 105 SER 105 450 450 SER SER A . n A 1 106 GLU 106 451 451 GLU GLU A . n A 1 107 PHE 107 452 452 PHE PHE A . n A 1 108 MSE 108 453 453 MSE MSE A . n A 1 109 LYS 109 454 454 LYS LYS A . n A 1 110 TRP 110 455 455 TRP TRP A . n A 1 111 LYS 111 456 456 LYS LYS A . n A 1 112 GLU 112 457 457 GLU GLU A . n A 1 113 ALA 113 458 458 ALA ALA A . n A 1 114 MSE 114 459 459 MSE MSE A . n A 1 115 PHE 115 460 460 PHE PHE A . n A 1 116 SER 116 461 461 SER SER A . n A 1 117 ALA 117 462 462 ALA ALA A . n A 1 118 GLY 118 463 463 GLY GLY A . n A 1 119 MSE 119 464 464 MSE MSE A . n A 1 120 GLN 120 465 465 GLN GLN A . n A 1 121 LEU 121 466 466 LEU LEU A . n A 1 122 PRO 122 467 467 PRO PRO A . n A 1 123 THR 123 468 468 THR THR A . n A 1 124 LEU 124 469 469 LEU LEU A . n A 1 125 ASP 125 470 470 ASP ASP A . n A 1 126 GLU 126 471 471 GLU GLU A . n A 1 127 ILE 127 472 472 ILE ILE A . n A 1 128 ASN 128 473 473 ASN ASN A . n A 1 129 LYS 129 474 474 LYS LYS A . n A 1 130 LYS 130 475 475 LYS LYS A . n A 1 131 GLU 131 476 476 GLU GLU A . n A 1 132 LEU 132 477 477 LEU LEU A . n A 1 133 SER 133 478 478 SER SER A . n A 1 134 ILE 134 479 479 ILE ILE A . n A 1 135 LYS 135 480 480 LYS LYS A . n A 1 136 GLU 136 481 481 GLU GLU A . n A 1 137 ALA 137 482 482 ALA ALA A . n B 1 1 GLY 1 346 ? ? ? B . n B 1 2 PRO 2 347 ? ? ? B . n B 1 3 PRO 3 348 ? ? ? B . n B 1 4 LYS 4 349 ? ? ? B . n B 1 5 SER 5 350 350 SER SER B . n B 1 6 GLN 6 351 351 GLN GLN B . n B 1 7 PRO 7 352 352 PRO PRO B . n B 1 8 VAL 8 353 353 VAL VAL B . n B 1 9 SER 9 354 354 SER SER B . n B 1 10 LEU 10 355 355 LEU LEU B . n B 1 11 PRO 11 356 356 PRO PRO B . n B 1 12 GLU 12 357 357 GLU GLU B . n B 1 13 GLU 13 358 358 GLU GLU B . n B 1 14 LEU 14 359 359 LEU LEU B . n B 1 15 ASN 15 360 360 ASN ASN B . n B 1 16 ARG 16 361 361 ARG ARG B . n B 1 17 VAL 17 362 362 VAL VAL B . n B 1 18 ARG 18 363 363 ARG ARG B . n B 1 19 LEU 19 364 364 LEU LEU B . n B 1 20 SER 20 365 365 SER SER B . n B 1 21 ARG 21 366 366 ARG ARG B . n B 1 22 HIS 22 367 367 HIS HIS B . n B 1 23 LYS 23 368 368 LYS LYS B . n B 1 24 LEU 24 369 369 LEU LEU B . n B 1 25 GLU 25 370 370 GLU GLU B . n B 1 26 ARG 26 371 371 ARG ARG B . n B 1 27 TRP 27 372 372 TRP TRP B . n B 1 28 CYS 28 373 373 CYS CYS B . n B 1 29 HIS 29 374 374 HIS HIS B . n B 1 30 MSE 30 375 375 MSE MSE B . n B 1 31 PRO 31 376 376 PRO PRO B . n B 1 32 PHE 32 377 377 PHE PHE B . n B 1 33 PHE 33 378 378 PHE PHE B . n B 1 34 ALA 34 379 379 ALA ALA B . n B 1 35 LYS 35 380 380 LYS LYS B . n B 1 36 THR 36 381 381 THR THR B . n B 1 37 VAL 37 382 382 VAL VAL B . n B 1 38 THR 38 383 383 THR THR B . n B 1 39 GLY 39 384 384 GLY GLY B . n B 1 40 CYS 40 385 385 CYS CYS B . n B 1 41 PHE 41 386 386 PHE PHE B . n B 1 42 VAL 42 387 387 VAL VAL B . n B 1 43 ARG 43 388 388 ARG ARG B . n B 1 44 ILE 44 389 389 ILE ILE B . n B 1 45 GLY 45 390 390 GLY GLY B . n B 1 46 ILE 46 391 391 ILE ILE B . n B 1 47 GLY 47 392 392 GLY GLY B . n B 1 48 ASN 48 393 393 ASN ASN B . n B 1 49 HIS 49 394 ? ? ? B . n B 1 50 ASN 50 395 ? ? ? B . n B 1 51 SER 51 396 ? ? ? B . n B 1 52 LYS 52 397 ? ? ? B . n B 1 53 PRO 53 398 398 PRO PRO B . n B 1 54 VAL 54 399 399 VAL VAL B . n B 1 55 TYR 55 400 400 TYR TYR B . n B 1 56 ARG 56 401 401 ARG ARG B . n B 1 57 VAL 57 402 402 VAL VAL B . n B 1 58 ALA 58 403 403 ALA ALA B . n B 1 59 GLU 59 404 404 GLU GLU B . n B 1 60 ILE 60 405 405 ILE ILE B . n B 1 61 THR 61 406 406 THR THR B . n B 1 62 GLY 62 407 407 GLY GLY B . n B 1 63 VAL 63 408 408 VAL VAL B . n B 1 64 VAL 64 409 409 VAL VAL B . n B 1 65 GLU 65 410 410 GLU GLU B . n B 1 66 THR 66 411 411 THR THR B . n B 1 67 ALA 67 412 412 ALA ALA B . n B 1 68 LYS 68 413 413 LYS LYS B . n B 1 69 VAL 69 414 414 VAL VAL B . n B 1 70 TYR 70 415 415 TYR TYR B . n B 1 71 GLN 71 416 416 GLN GLN B . n B 1 72 LEU 72 417 417 LEU LEU B . n B 1 73 GLY 73 418 418 GLY GLY B . n B 1 74 GLY 74 419 419 GLY GLY B . n B 1 75 THR 75 420 420 THR THR B . n B 1 76 ARG 76 421 421 ARG ARG B . n B 1 77 THR 77 422 422 THR THR B . n B 1 78 ASN 78 423 423 ASN ASN B . n B 1 79 LYS 79 424 424 LYS LYS B . n B 1 80 GLY 80 425 425 GLY GLY B . n B 1 81 LEU 81 426 426 LEU LEU B . n B 1 82 GLN 82 427 427 GLN GLN B . n B 1 83 LEU 83 428 428 LEU LEU B . n B 1 84 ARG 84 429 429 ARG ARG B . n B 1 85 HIS 85 430 430 HIS HIS B . n B 1 86 GLY 86 431 431 GLY GLY B . n B 1 87 ASN 87 432 432 ASN ASN B . n B 1 88 ASP 88 433 433 ASP ASP B . n B 1 89 GLN 89 434 434 GLN GLN B . n B 1 90 ARG 90 435 435 ARG ARG B . n B 1 91 VAL 91 436 436 VAL VAL B . n B 1 92 PHE 92 437 437 PHE PHE B . n B 1 93 ARG 93 438 438 ARG ARG B . n B 1 94 LEU 94 439 439 LEU LEU B . n B 1 95 GLU 95 440 440 GLU GLU B . n B 1 96 PHE 96 441 441 PHE PHE B . n B 1 97 VAL 97 442 442 VAL VAL B . n B 1 98 SER 98 443 443 SER SER B . n B 1 99 ASN 99 444 444 ASN ASN B . n B 1 100 GLN 100 445 445 GLN GLN B . n B 1 101 GLU 101 446 446 GLU GLU B . n B 1 102 PHE 102 447 447 PHE PHE B . n B 1 103 THR 103 448 448 THR THR B . n B 1 104 GLU 104 449 449 GLU GLU B . n B 1 105 SER 105 450 450 SER SER B . n B 1 106 GLU 106 451 451 GLU GLU B . n B 1 107 PHE 107 452 452 PHE PHE B . n B 1 108 MSE 108 453 453 MSE MSE B . n B 1 109 LYS 109 454 454 LYS LYS B . n B 1 110 TRP 110 455 455 TRP TRP B . n B 1 111 LYS 111 456 456 LYS LYS B . n B 1 112 GLU 112 457 457 GLU GLU B . n B 1 113 ALA 113 458 458 ALA ALA B . n B 1 114 MSE 114 459 459 MSE MSE B . n B 1 115 PHE 115 460 460 PHE PHE B . n B 1 116 SER 116 461 461 SER SER B . n B 1 117 ALA 117 462 462 ALA ALA B . n B 1 118 GLY 118 463 463 GLY GLY B . n B 1 119 MSE 119 464 464 MSE MSE B . n B 1 120 GLN 120 465 465 GLN GLN B . n B 1 121 LEU 121 466 466 LEU LEU B . n B 1 122 PRO 122 467 467 PRO PRO B . n B 1 123 THR 123 468 468 THR THR B . n B 1 124 LEU 124 469 469 LEU LEU B . n B 1 125 ASP 125 470 470 ASP ASP B . n B 1 126 GLU 126 471 471 GLU GLU B . n B 1 127 ILE 127 472 472 ILE ILE B . n B 1 128 ASN 128 473 473 ASN ASN B . n B 1 129 LYS 129 474 474 LYS LYS B . n B 1 130 LYS 130 475 475 LYS LYS B . n B 1 131 GLU 131 476 476 GLU GLU B . n B 1 132 LEU 132 477 477 LEU LEU B . n B 1 133 SER 133 478 478 SER SER B . n B 1 134 ILE 134 479 479 ILE ILE B . n B 1 135 LYS 135 480 480 LYS LYS B . n B 1 136 GLU 136 481 481 GLU GLU B . n B 1 137 ALA 137 482 482 ALA ALA B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 500 1 SO4 SO4 A . D 2 SO4 1 501 5 SO4 SO4 A . E 3 GOL 1 502 1 GOL GOL A . F 4 UNX 1 503 2 UNX UNX A . G 4 UNX 1 504 5 UNX UNX A . H 4 UNX 1 505 6 UNX UNX A . I 4 UNX 1 506 7 UNX UNX A . J 4 UNX 1 507 8 UNX UNX A . K 4 UNX 1 508 9 UNX UNX A . L 4 UNX 1 509 14 UNX UNX A . M 4 UNX 1 510 15 UNX UNX A . N 4 UNX 1 511 16 UNX UNX A . O 4 UNX 1 512 18 UNX UNX A . P 4 UNX 1 513 20 UNX UNX A . Q 4 UNX 1 514 21 UNX UNX A . R 4 UNX 1 515 23 UNX UNX A . S 4 UNX 1 516 25 UNX UNX A . T 2 SO4 1 500 2 SO4 SO4 B . U 2 SO4 1 501 4 SO4 SO4 B . V 4 UNX 1 502 3 UNX UNX B . W 4 UNX 1 503 4 UNX UNX B . X 4 UNX 1 504 11 UNX UNX B . Y 4 UNX 1 505 12 UNX UNX B . Z 4 UNX 1 506 13 UNX UNX B . AA 4 UNX 1 507 17 UNX UNX B . BA 4 UNX 1 508 19 UNX UNX B . CA 4 UNX 1 509 22 UNX UNX B . DA 4 UNX 1 510 24 UNX UNX B . EA 5 HOH 1 600 5 HOH HOH A . EA 5 HOH 2 601 10 HOH HOH A . EA 5 HOH 3 602 11 HOH HOH A . EA 5 HOH 4 603 14 HOH HOH A . EA 5 HOH 5 604 15 HOH HOH A . EA 5 HOH 6 605 17 HOH HOH A . EA 5 HOH 7 606 18 HOH HOH A . EA 5 HOH 8 607 19 HOH HOH A . EA 5 HOH 9 608 21 HOH HOH A . EA 5 HOH 10 609 22 HOH HOH A . EA 5 HOH 11 610 26 HOH HOH A . EA 5 HOH 12 611 27 HOH HOH A . EA 5 HOH 13 612 28 HOH HOH A . EA 5 HOH 14 613 31 HOH HOH A . EA 5 HOH 15 614 32 HOH HOH A . EA 5 HOH 16 615 33 HOH HOH A . EA 5 HOH 17 616 34 HOH HOH A . EA 5 HOH 18 617 35 HOH HOH A . EA 5 HOH 19 618 43 HOH HOH A . EA 5 HOH 20 619 44 HOH HOH A . EA 5 HOH 21 620 46 HOH HOH A . EA 5 HOH 22 621 47 HOH HOH A . EA 5 HOH 23 622 51 HOH HOH A . EA 5 HOH 24 623 52 HOH HOH A . EA 5 HOH 25 624 53 HOH HOH A . EA 5 HOH 26 625 55 HOH HOH A . EA 5 HOH 27 626 56 HOH HOH A . EA 5 HOH 28 627 57 HOH HOH A . EA 5 HOH 29 628 58 HOH HOH A . EA 5 HOH 30 629 60 HOH HOH A . EA 5 HOH 31 630 62 HOH HOH A . EA 5 HOH 32 631 63 HOH HOH A . EA 5 HOH 33 632 64 HOH HOH A . EA 5 HOH 34 633 65 HOH HOH A . EA 5 HOH 35 634 69 HOH HOH A . EA 5 HOH 36 635 70 HOH HOH A . EA 5 HOH 37 636 71 HOH HOH A . EA 5 HOH 38 637 72 HOH HOH A . EA 5 HOH 39 638 74 HOH HOH A . EA 5 HOH 40 639 76 HOH HOH A . EA 5 HOH 41 640 79 HOH HOH A . EA 5 HOH 42 641 80 HOH HOH A . EA 5 HOH 43 642 82 HOH HOH A . EA 5 HOH 44 643 83 HOH HOH A . EA 5 HOH 45 644 84 HOH HOH A . EA 5 HOH 46 645 85 HOH HOH A . EA 5 HOH 47 646 86 HOH HOH A . EA 5 HOH 48 647 95 HOH HOH A . EA 5 HOH 49 648 100 HOH HOH A . EA 5 HOH 50 649 101 HOH HOH A . EA 5 HOH 51 650 102 HOH HOH A . EA 5 HOH 52 651 103 HOH HOH A . EA 5 HOH 53 652 105 HOH HOH A . EA 5 HOH 54 653 106 HOH HOH A . EA 5 HOH 55 654 107 HOH HOH A . EA 5 HOH 56 655 108 HOH HOH A . EA 5 HOH 57 656 109 HOH HOH A . EA 5 HOH 58 657 110 HOH HOH A . EA 5 HOH 59 658 111 HOH HOH A . EA 5 HOH 60 659 112 HOH HOH A . EA 5 HOH 61 660 115 HOH HOH A . EA 5 HOH 62 661 116 HOH HOH A . EA 5 HOH 63 662 118 HOH HOH A . EA 5 HOH 64 663 119 HOH HOH A . EA 5 HOH 65 664 120 HOH HOH A . EA 5 HOH 66 665 122 HOH HOH A . EA 5 HOH 67 666 128 HOH HOH A . EA 5 HOH 68 667 130 HOH HOH A . FA 5 HOH 1 600 16 HOH HOH B . FA 5 HOH 2 601 25 HOH HOH B . FA 5 HOH 3 602 29 HOH HOH B . FA 5 HOH 4 603 30 HOH HOH B . FA 5 HOH 5 604 36 HOH HOH B . FA 5 HOH 6 605 42 HOH HOH B . FA 5 HOH 7 606 48 HOH HOH B . FA 5 HOH 8 607 50 HOH HOH B . FA 5 HOH 9 608 54 HOH HOH B . FA 5 HOH 10 609 59 HOH HOH B . FA 5 HOH 11 610 66 HOH HOH B . FA 5 HOH 12 611 68 HOH HOH B . FA 5 HOH 13 612 73 HOH HOH B . FA 5 HOH 14 613 81 HOH HOH B . FA 5 HOH 15 614 87 HOH HOH B . FA 5 HOH 16 615 88 HOH HOH B . FA 5 HOH 17 616 89 HOH HOH B . FA 5 HOH 18 617 90 HOH HOH B . FA 5 HOH 19 618 91 HOH HOH B . FA 5 HOH 20 619 92 HOH HOH B . FA 5 HOH 21 620 93 HOH HOH B . FA 5 HOH 22 621 94 HOH HOH B . FA 5 HOH 23 622 97 HOH HOH B . FA 5 HOH 24 623 98 HOH HOH B . FA 5 HOH 25 624 99 HOH HOH B . FA 5 HOH 26 625 114 HOH HOH B . FA 5 HOH 27 626 117 HOH HOH B . FA 5 HOH 28 627 123 HOH HOH B . FA 5 HOH 29 628 124 HOH HOH B . FA 5 HOH 30 629 125 HOH HOH B . FA 5 HOH 31 630 126 HOH HOH B . FA 5 HOH 32 631 127 HOH HOH B . FA 5 HOH 33 632 129 HOH HOH B . FA 5 HOH 34 633 131 HOH HOH B . FA 5 HOH 35 634 132 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 30 A MSE 375 ? MET SELENOMETHIONINE 2 A MSE 108 A MSE 453 ? MET SELENOMETHIONINE 3 A MSE 114 A MSE 459 ? MET SELENOMETHIONINE 4 A MSE 119 A MSE 464 ? MET SELENOMETHIONINE 5 B MSE 30 B MSE 375 ? MET SELENOMETHIONINE 6 B MSE 108 B MSE 453 ? MET SELENOMETHIONINE 7 B MSE 114 B MSE 459 ? MET SELENOMETHIONINE 8 B MSE 119 B MSE 464 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 2 1 B,T,U,V,W,X,Y,Z,AA,BA,CA,DA,FA 2 2 A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,EA # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1800 ? 1 MORE -59 ? 1 'SSA (A^2)' 14060 ? 2 'ABSA (A^2)' 2270 ? 2 MORE -60 ? 2 'SSA (A^2)' 13590 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_747 -x+2,y-1/2,-z+2 -1.0000000000 0.0000000000 0.0000000000 62.6882010116 0.0000000000 1.0000000000 0.0000000000 -25.1845000000 0.0000000000 0.0000000000 -1.0000000000 135.7697343934 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-04 2 'Structure model' 1 1 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 23.6318 17.3380 42.3143 0.0099 0.0153 0.0248 0.0034 -0.0026 -0.0113 1.3837 3.5139 3.2265 -0.2231 0.7630 -1.6636 -0.0060 -0.0439 0.0498 -0.0406 0.0672 -0.1113 -0.0436 -0.0551 0.1119 'X-RAY DIFFRACTION' 2 ? refined 41.5642 -3.0923 59.9348 0.0432 0.0396 0.0397 -0.0073 -0.0011 0.0251 4.9482 1.9182 3.8415 -0.1037 -0.8148 0.5264 0.0838 -0.0834 -0.0004 -0.1266 -0.0229 -0.1893 -0.1169 -0.0909 0.2985 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 348 A 482 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 350 B 482 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA CCP4_3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 REFMAC refmac_5.5.0109 24/04/2001 program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'August 3, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 JDirector . ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 ARP/wARP . ? ? ? ? 'model building' ? ? ? 8 Coot . ? ? ? ? 'model building' ? ? ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 361 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 361 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 361 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.32 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.02 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 351 ? CG ? A GLN 6 CG 2 1 Y 1 A GLN 351 ? CD ? A GLN 6 CD 3 1 Y 1 A GLN 351 ? OE1 ? A GLN 6 OE1 4 1 Y 1 A GLN 351 ? NE2 ? A GLN 6 NE2 5 1 Y 1 A LYS 424 ? CE ? A LYS 79 CE 6 1 Y 1 A LYS 424 ? NZ ? A LYS 79 NZ 7 1 Y 1 A LEU 477 ? CG ? A LEU 132 CG 8 1 Y 1 A LEU 477 ? CD1 ? A LEU 132 CD1 9 1 Y 1 A LEU 477 ? CD2 ? A LEU 132 CD2 10 1 Y 1 A LYS 480 ? CG ? A LYS 135 CG 11 1 Y 1 A LYS 480 ? CD ? A LYS 135 CD 12 1 Y 1 A LYS 480 ? CE ? A LYS 135 CE 13 1 Y 1 A LYS 480 ? NZ ? A LYS 135 NZ 14 1 Y 1 B SER 350 ? OG ? B SER 5 OG 15 1 Y 1 B GLN 351 ? CG ? B GLN 6 CG 16 1 Y 1 B GLN 351 ? CD ? B GLN 6 CD 17 1 Y 1 B GLN 351 ? OE1 ? B GLN 6 OE1 18 1 Y 1 B GLN 351 ? NE2 ? B GLN 6 NE2 19 1 Y 1 B LYS 413 ? CD ? B LYS 68 CD 20 1 Y 1 B LYS 413 ? CE ? B LYS 68 CE 21 1 Y 1 B LYS 413 ? NZ ? B LYS 68 NZ 22 1 Y 1 B ARG 429 ? CZ ? B ARG 84 CZ 23 1 Y 1 B ARG 429 ? NH1 ? B ARG 84 NH1 24 1 Y 1 B ARG 429 ? NH2 ? B ARG 84 NH2 25 1 Y 1 B GLN 434 ? CG ? B GLN 89 CG 26 1 Y 1 B GLN 434 ? CD ? B GLN 89 CD 27 1 Y 1 B GLN 434 ? OE1 ? B GLN 89 OE1 28 1 Y 1 B GLN 434 ? NE2 ? B GLN 89 NE2 29 1 Y 1 B LYS 474 ? CG ? B LYS 129 CG 30 1 Y 1 B LYS 474 ? CD ? B LYS 129 CD 31 1 Y 1 B LYS 474 ? CE ? B LYS 129 CE 32 1 Y 1 B LYS 474 ? NZ ? B LYS 129 NZ 33 1 Y 1 B LYS 480 ? CD ? B LYS 135 CD 34 1 Y 1 B LYS 480 ? CE ? B LYS 135 CE 35 1 Y 1 B LYS 480 ? NZ ? B LYS 135 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 346 ? A GLY 1 2 1 Y 1 A PRO 347 ? A PRO 2 3 1 Y 1 A HIS 394 ? A HIS 49 4 1 Y 1 A ASN 395 ? A ASN 50 5 1 Y 1 A SER 396 ? A SER 51 6 1 Y 1 A LYS 397 ? A LYS 52 7 1 Y 1 B GLY 346 ? B GLY 1 8 1 Y 1 B PRO 347 ? B PRO 2 9 1 Y 1 B PRO 348 ? B PRO 3 10 1 Y 1 B LYS 349 ? B LYS 4 11 1 Y 1 B HIS 394 ? B HIS 49 12 1 Y 1 B ASN 395 ? B ASN 50 13 1 Y 1 B SER 396 ? B SER 51 14 1 Y 1 B LYS 397 ? B LYS 52 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 'UNKNOWN ATOM OR ION' UNX 5 water HOH #