HEADER TRANSCRIPTION 30-SEP-11 3U1U TITLE CRYSTAL STRUCTURE OF RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG TITLE 2 PLUS-3 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 347-482; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RTF1, KIAA0252; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS PLUS-3, TRANSCRIPTION ELONGATION, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.GUO,W.TEMPEL,C.BIAN,A.K.WERNIMONT,C.BOUNTRA,J.WEIGELT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 2 08-NOV-17 3U1U 1 REMARK REVDAT 1 04-APR-12 3U1U 0 JRNL AUTH Y.GUO,W.TEMPEL,C.BIAN,A.K.WERNIMONT,C.BOUNTRA,J.WEIGELT, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,J.MIN JRNL TITL CRYSTAL STRUCTURE OF RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 JRNL TITL 2 HOMOLOG PLUS-3 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1513 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2128 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 16 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2071 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.78000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -1.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.60000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.951 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2226 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1576 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3015 ; 1.355 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3813 ; 0.881 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 6.132 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;35.349 ;22.897 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 396 ;12.591 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.832 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 326 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2462 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 484 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1336 ; 0.683 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 542 ; 0.192 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2167 ; 1.193 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 890 ; 2.146 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 839 ; 3.398 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 348 A 482 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6318 17.3380 42.3143 REMARK 3 T TENSOR REMARK 3 T11: 0.0099 T22: 0.0153 REMARK 3 T33: 0.0248 T12: 0.0034 REMARK 3 T13: -0.0026 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.3837 L22: 3.5139 REMARK 3 L33: 3.2265 L12: -0.2231 REMARK 3 L13: 0.7630 L23: -1.6636 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0406 S13: 0.0672 REMARK 3 S21: -0.0436 S22: -0.0439 S23: -0.1113 REMARK 3 S31: -0.0551 S32: 0.1119 S33: 0.0498 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 350 B 482 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5642 -3.0923 59.9348 REMARK 3 T TENSOR REMARK 3 T11: 0.0432 T22: 0.0396 REMARK 3 T33: 0.0397 T12: -0.0073 REMARK 3 T13: -0.0011 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 4.9482 L22: 1.9182 REMARK 3 L33: 3.8415 L12: -0.1037 REMARK 3 L13: -0.8148 L23: 0.5264 REMARK 3 S TENSOR REMARK 3 S11: 0.0838 S12: -0.1266 S13: -0.0229 REMARK 3 S21: -0.1169 S22: -0.0834 S23: -0.1893 REMARK 3 S31: -0.0909 S32: 0.2985 S33: -0.0004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED. THE SECOND DATA SET REMARK 3 ATTACHED IS BASED ON THE SAME DIFFRACTION IMAGES AS THE REMARK 3 REFINEMENT AMPLITUDES BUT WAS PROCESSED IN HKL3000 AND USED FOR REMARK 3 SAD PHASING. REMARK 4 REMARK 4 3U1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29882 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0335 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.07 REMARK 200 R MERGE FOR SHELL (I) : 0.89000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG-3350, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM CACODYLATE, PH 5.5, SITTING DROP VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.18450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.68820 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -25.18450 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 135.76973 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 346 REMARK 465 PRO A 347 REMARK 465 HIS A 394 REMARK 465 ASN A 395 REMARK 465 SER A 396 REMARK 465 LYS A 397 REMARK 465 GLY B 346 REMARK 465 PRO B 347 REMARK 465 PRO B 348 REMARK 465 LYS B 349 REMARK 465 HIS B 394 REMARK 465 ASN B 395 REMARK 465 SER B 396 REMARK 465 LYS B 397 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 351 CG CD OE1 NE2 REMARK 470 LYS A 424 CE NZ REMARK 470 LEU A 477 CG CD1 CD2 REMARK 470 LYS A 480 CG CD CE NZ REMARK 470 SER B 350 OG REMARK 470 GLN B 351 CG CD OE1 NE2 REMARK 470 LYS B 413 CD CE NZ REMARK 470 ARG B 429 CZ NH1 NH2 REMARK 470 GLN B 434 CG CD OE1 NE2 REMARK 470 LYS B 474 CG CD CE NZ REMARK 470 LYS B 480 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 361 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 DBREF 3U1U A 347 482 UNP Q92541 RTF1_HUMAN 347 482 DBREF 3U1U B 347 482 UNP Q92541 RTF1_HUMAN 347 482 SEQADV 3U1U GLY A 346 UNP Q92541 EXPRESSION TAG SEQADV 3U1U GLY B 346 UNP Q92541 EXPRESSION TAG SEQRES 1 A 137 GLY PRO PRO LYS SER GLN PRO VAL SER LEU PRO GLU GLU SEQRES 2 A 137 LEU ASN ARG VAL ARG LEU SER ARG HIS LYS LEU GLU ARG SEQRES 3 A 137 TRP CYS HIS MSE PRO PHE PHE ALA LYS THR VAL THR GLY SEQRES 4 A 137 CYS PHE VAL ARG ILE GLY ILE GLY ASN HIS ASN SER LYS SEQRES 5 A 137 PRO VAL TYR ARG VAL ALA GLU ILE THR GLY VAL VAL GLU SEQRES 6 A 137 THR ALA LYS VAL TYR GLN LEU GLY GLY THR ARG THR ASN SEQRES 7 A 137 LYS GLY LEU GLN LEU ARG HIS GLY ASN ASP GLN ARG VAL SEQRES 8 A 137 PHE ARG LEU GLU PHE VAL SER ASN GLN GLU PHE THR GLU SEQRES 9 A 137 SER GLU PHE MSE LYS TRP LYS GLU ALA MSE PHE SER ALA SEQRES 10 A 137 GLY MSE GLN LEU PRO THR LEU ASP GLU ILE ASN LYS LYS SEQRES 11 A 137 GLU LEU SER ILE LYS GLU ALA SEQRES 1 B 137 GLY PRO PRO LYS SER GLN PRO VAL SER LEU PRO GLU GLU SEQRES 2 B 137 LEU ASN ARG VAL ARG LEU SER ARG HIS LYS LEU GLU ARG SEQRES 3 B 137 TRP CYS HIS MSE PRO PHE PHE ALA LYS THR VAL THR GLY SEQRES 4 B 137 CYS PHE VAL ARG ILE GLY ILE GLY ASN HIS ASN SER LYS SEQRES 5 B 137 PRO VAL TYR ARG VAL ALA GLU ILE THR GLY VAL VAL GLU SEQRES 6 B 137 THR ALA LYS VAL TYR GLN LEU GLY GLY THR ARG THR ASN SEQRES 7 B 137 LYS GLY LEU GLN LEU ARG HIS GLY ASN ASP GLN ARG VAL SEQRES 8 B 137 PHE ARG LEU GLU PHE VAL SER ASN GLN GLU PHE THR GLU SEQRES 9 B 137 SER GLU PHE MSE LYS TRP LYS GLU ALA MSE PHE SER ALA SEQRES 10 B 137 GLY MSE GLN LEU PRO THR LEU ASP GLU ILE ASN LYS LYS SEQRES 11 B 137 GLU LEU SER ILE LYS GLU ALA MODRES 3U1U MSE A 375 MET SELENOMETHIONINE MODRES 3U1U MSE A 453 MET SELENOMETHIONINE MODRES 3U1U MSE A 459 MET SELENOMETHIONINE MODRES 3U1U MSE A 464 MET SELENOMETHIONINE MODRES 3U1U MSE B 375 MET SELENOMETHIONINE MODRES 3U1U MSE B 453 MET SELENOMETHIONINE MODRES 3U1U MSE B 459 MET SELENOMETHIONINE MODRES 3U1U MSE B 464 MET SELENOMETHIONINE HET MSE A 375 8 HET MSE A 453 8 HET MSE A 459 8 HET MSE A 464 8 HET MSE B 375 8 HET MSE B 453 8 HET MSE B 459 8 HET MSE B 464 8 HET SO4 A 500 5 HET SO4 A 501 5 HET GOL A 502 6 HET UNX A 503 1 HET UNX A 504 1 HET UNX A 505 1 HET UNX A 506 1 HET UNX A 507 1 HET UNX A 508 1 HET UNX A 509 1 HET UNX A 510 1 HET UNX A 511 1 HET UNX A 512 1 HET UNX A 513 1 HET UNX A 514 1 HET UNX A 515 1 HET UNX A 516 1 HET SO4 B 500 5 HET SO4 B 501 5 HET UNX B 502 1 HET UNX B 503 1 HET UNX B 504 1 HET UNX B 505 1 HET UNX B 506 1 HET UNX B 507 1 HET UNX B 508 1 HET UNX B 509 1 HET UNX B 510 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM UNX UNKNOWN ATOM OR ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 GOL C3 H8 O3 FORMUL 6 UNX 23(X) FORMUL 31 HOH *103(H2 O) HELIX 1 1 LEU A 355 ARG A 361 1 7 HELIX 2 2 SER A 365 CYS A 373 1 9 HELIX 3 3 PHE A 377 THR A 383 1 7 HELIX 4 4 GLU A 440 VAL A 442 5 3 HELIX 5 5 THR A 448 GLY A 463 1 16 HELIX 6 6 THR A 468 ILE A 479 1 12 HELIX 7 7 LEU B 355 ASN B 360 1 6 HELIX 8 8 ARG B 361 ARG B 363 5 3 HELIX 9 9 SER B 365 CYS B 373 1 9 HELIX 10 10 PHE B 377 THR B 383 1 7 HELIX 11 11 GLU B 440 VAL B 442 5 3 HELIX 12 12 THR B 448 ALA B 462 1 15 HELIX 13 13 THR B 468 ILE B 479 1 12 SHEET 1 A 4 PHE A 386 GLY A 392 0 SHEET 2 A 4 VAL A 399 LEU A 417 -1 O VAL A 399 N GLY A 392 SHEET 3 A 4 THR A 420 HIS A 430 -1 O GLN A 427 N THR A 406 SHEET 4 A 4 ASP A 433 ARG A 438 -1 O ARG A 435 N LEU A 428 SHEET 1 B 4 PHE B 386 GLY B 392 0 SHEET 2 B 4 VAL B 399 LEU B 417 -1 O ARG B 401 N ILE B 389 SHEET 3 B 4 THR B 420 HIS B 430 -1 O ASN B 423 N THR B 411 SHEET 4 B 4 ASP B 433 ARG B 438 -1 O PHE B 437 N LEU B 426 LINK C HIS A 374 N MSE A 375 1555 1555 1.32 LINK C MSE A 375 N PRO A 376 1555 1555 1.35 LINK C PHE A 452 N MSE A 453 1555 1555 1.31 LINK C MSE A 453 N LYS A 454 1555 1555 1.33 LINK C ALA A 458 N MSE A 459 1555 1555 1.33 LINK C MSE A 459 N PHE A 460 1555 1555 1.32 LINK C GLY A 463 N MSE A 464 1555 1555 1.32 LINK C MSE A 464 N GLN A 465 1555 1555 1.32 LINK C HIS B 374 N MSE B 375 1555 1555 1.33 LINK C MSE B 375 N APRO B 376 1555 1555 1.34 LINK C MSE B 375 N BPRO B 376 1555 1555 1.34 LINK C PHE B 452 N MSE B 453 1555 1555 1.33 LINK C MSE B 453 N LYS B 454 1555 1555 1.33 LINK C ALA B 458 N MSE B 459 1555 1555 1.33 LINK C MSE B 459 N PHE B 460 1555 1555 1.33 LINK C GLY B 463 N MSE B 464 1555 1555 1.34 LINK C MSE B 464 N GLN B 465 1555 1555 1.33 SITE 1 AC1 7 HIS A 374 THR A 420 HOH A 620 THR B 411 SITE 2 AC1 7 ALA B 412 LYS B 413 ARG B 438 SITE 1 AC2 3 HIS A 374 THR A 422 ASN A 423 SITE 1 AC3 6 PHE A 460 GLY A 463 MSE A 464 GLN A 465 SITE 2 AC3 6 HOH A 621 HOH A 630 SITE 1 AC4 5 SER B 350 TYR B 415 GLN B 416 ARG B 421 SITE 2 AC4 5 HOH B 612 SITE 1 AC5 5 ARG A 366 ILE B 391 ARG B 401 ARG B 435 SITE 2 AC5 5 HOH B 621 CRYST1 47.479 50.369 69.776 90.00 103.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021062 0.000000 0.005006 0.00000 SCALE2 0.000000 0.019853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014731 0.00000