data_3U21 # _entry.id 3U21 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3U21 pdb_00003u21 10.2210/pdb3u21/pdb RCSB RCSB068206 ? ? WWPDB D_1000068206 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 421522 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3U21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for Stem Cell Biology' 2 'Partnership for Stem Cell Biology (STEMCELL)' 3 # _citation.id primary _citation.title 'Structure of a Novel Winged-Helix Like Domain from Human NFRKB Protein.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first e43761 _citation.page_last e43761 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22984442 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0043761 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kumar, A.' 1 ? primary 'Mocklinghoff, S.' 2 ? primary 'Yumoto, F.' 3 ? primary 'Jaroszewski, L.' 4 ? primary 'Farr, C.L.' 5 ? primary 'Grzechnik, A.' 6 ? primary 'Nguyen, P.' 7 ? primary 'Weichenberger, C.X.' 8 ? primary 'Chiu, H.J.' 9 ? primary 'Klock, H.E.' 10 ? primary 'Elsliger, M.A.' 11 ? primary 'Deacon, A.M.' 12 ? primary 'Godzik, A.' 13 ? primary 'Lesley, S.A.' 14 ? primary 'Conklin, B.R.' 15 ? primary 'Fletterick, R.J.' 16 ? primary 'Wilson, I.A.' 17 ? # _cell.entry_id 3U21 _cell.length_a 60.942 _cell.length_b 60.942 _cell.length_c 130.839 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U21 _symmetry.Int_Tables_number 96 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nuclear factor related to kappa-B-binding protein' 14504.097 2 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 water nat water 18.015 25 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DNA-binding protein R kappa-B, INO80 complex subunit G' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GLGINEISSSFFSLLLEILLLESQASLP(MSE)LEERVLDWQSSPASSLNSWFSAAPNWAELVLPALQYLAGESRAVPSS FSPFVEF(MLY)E(MLY)TQQW(MLY)LLGQSQDNE(MLY)ELAALFQLWLET(MLY)DQAFC(MLY)QENEDSS ; _entity_poly.pdbx_seq_one_letter_code_can ;GLGINEISSSFFSLLLEILLLESQASLPMLEERVLDWQSSPASSLNSWFSAAPNWAELVLPALQYLAGESRAVPSSFSPF VEFKEKTQQWKLLGQSQDNEKELAALFQLWLETKDQAFCKQENEDSS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 421522 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 GLY n 1 4 ILE n 1 5 ASN n 1 6 GLU n 1 7 ILE n 1 8 SER n 1 9 SER n 1 10 SER n 1 11 PHE n 1 12 PHE n 1 13 SER n 1 14 LEU n 1 15 LEU n 1 16 LEU n 1 17 GLU n 1 18 ILE n 1 19 LEU n 1 20 LEU n 1 21 LEU n 1 22 GLU n 1 23 SER n 1 24 GLN n 1 25 ALA n 1 26 SER n 1 27 LEU n 1 28 PRO n 1 29 MSE n 1 30 LEU n 1 31 GLU n 1 32 GLU n 1 33 ARG n 1 34 VAL n 1 35 LEU n 1 36 ASP n 1 37 TRP n 1 38 GLN n 1 39 SER n 1 40 SER n 1 41 PRO n 1 42 ALA n 1 43 SER n 1 44 SER n 1 45 LEU n 1 46 ASN n 1 47 SER n 1 48 TRP n 1 49 PHE n 1 50 SER n 1 51 ALA n 1 52 ALA n 1 53 PRO n 1 54 ASN n 1 55 TRP n 1 56 ALA n 1 57 GLU n 1 58 LEU n 1 59 VAL n 1 60 LEU n 1 61 PRO n 1 62 ALA n 1 63 LEU n 1 64 GLN n 1 65 TYR n 1 66 LEU n 1 67 ALA n 1 68 GLY n 1 69 GLU n 1 70 SER n 1 71 ARG n 1 72 ALA n 1 73 VAL n 1 74 PRO n 1 75 SER n 1 76 SER n 1 77 PHE n 1 78 SER n 1 79 PRO n 1 80 PHE n 1 81 VAL n 1 82 GLU n 1 83 PHE n 1 84 MLY n 1 85 GLU n 1 86 MLY n 1 87 THR n 1 88 GLN n 1 89 GLN n 1 90 TRP n 1 91 MLY n 1 92 LEU n 1 93 LEU n 1 94 GLY n 1 95 GLN n 1 96 SER n 1 97 GLN n 1 98 ASP n 1 99 ASN n 1 100 GLU n 1 101 MLY n 1 102 GLU n 1 103 LEU n 1 104 ALA n 1 105 ALA n 1 106 LEU n 1 107 PHE n 1 108 GLN n 1 109 LEU n 1 110 TRP n 1 111 LEU n 1 112 GLU n 1 113 THR n 1 114 MLY n 1 115 ASP n 1 116 GLN n 1 117 ALA n 1 118 PHE n 1 119 CYS n 1 120 MLY n 1 121 GLN n 1 122 GLU n 1 123 ASN n 1 124 GLU n 1 125 ASP n 1 126 SER n 1 127 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC063280, INO80G, NFRKB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NFRKB_HUMAN _struct_ref.pdbx_db_accession Q6P4R8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LGINEISSSFFSLLLEILLLESQASLPMLEERVLDWQSSPASSLNSWFSAAPNWAELVLPALQYLAGESRAVPSSFSPFV EFKEKTQQWKLLGQSQDNEKELAALFQLWLETKDQAFCKQENEDSS ; _struct_ref.pdbx_align_begin 370 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3U21 A 2 ? 127 ? Q6P4R8 370 ? 495 ? 370 495 2 1 3U21 B 2 ? 127 ? Q6P4R8 370 ? 495 ? 370 495 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3U21 GLY A 1 ? UNP Q6P4R8 ? ? 'expression tag' 0 1 2 3U21 GLY B 1 ? UNP Q6P4R8 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3U21 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.09M HEPES pH 7.5, 10% glycerol, 1.26M tri-sodium citrate, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'double crystal monochromator' _diffrn_detector.pdbx_collection_date 2011-06-22 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97936 1.0 3 0.97915 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91837,0.97936,0.97915 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3U21 _reflns.d_resolution_high 2.18 _reflns.d_resolution_low 35.466 _reflns.number_obs 13560 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_netI_over_sigmaI 20.780 _reflns.percent_possible_obs 99.800 _reflns.B_iso_Wilson_estimate 41.259 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.180 2.260 9710 ? 1360 0.796 2.4 ? ? ? ? ? 99.900 1 1 2.260 2.350 9264 ? 1298 0.624 3.1 ? ? ? ? ? 99.800 2 1 2.350 2.450 8939 ? 1247 0.506 3.8 ? ? ? ? ? 100.000 3 1 2.450 2.580 9488 ? 1332 0.365 5.3 ? ? ? ? ? 100.000 4 1 2.580 2.750 10006 ? 1409 0.248 7.9 ? ? ? ? ? 100.000 5 1 2.750 2.960 9368 ? 1322 0.152 12.2 ? ? ? ? ? 100.000 6 1 2.960 3.250 9300 ? 1316 0.101 18.1 ? ? ? ? ? 100.000 7 1 3.250 3.720 9515 ? 1369 0.047 35.2 ? ? ? ? ? 99.900 8 1 3.720 4.680 9606 ? 1407 0.029 53.2 ? ? ? ? ? 99.900 9 1 4.680 ? 9421 ? 1500 0.024 58.9 ? ? ? ? ? 98.300 10 1 # _refine.entry_id 3U21 _refine.ls_d_res_high 2.1800 _refine.ls_d_res_low 35.466 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7500 _refine.ls_number_reflns_obs 13504 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. SODIUM ION (NA) FROM CRYSTALLIZATION CONDITION WAS MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2324 _refine.ls_R_factor_R_work 0.2305 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2695 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_number_reflns_R_free 662 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 46.2329 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.2100 _refine.aniso_B[2][2] -0.2100 _refine.aniso_B[3][3] 0.4300 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9290 _refine.correlation_coeff_Fo_to_Fc_free 0.9050 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.2220 _refine.overall_SU_ML 0.1560 _refine.overall_SU_B 12.5180 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 97.070 _refine.B_iso_min 25.430 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.370 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1732 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 1758 _refine_hist.d_res_high 2.1800 _refine_hist.d_res_low 35.466 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1780 0.012 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1163 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2425 1.252 1.978 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2861 0.866 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 214 5.482 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 77 37.308 26.104 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 301 15.037 15.133 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 2 7.053 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 279 0.070 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1922 0.006 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 338 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_it 1780 2.782 3.895 ? ? 'X-RAY DIFFRACTION' r_bond_other 1163 0.478 3.917 ? ? 'X-RAY DIFFRACTION' r_angle_it 2424 4.176 8.643 ? ? 'X-RAY DIFFRACTION' r_angle_others 2861 2.448 8.825 ? ? 'X-RAY DIFFRACTION' r_torsion_it 594 6.824 17.777 ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 'X-RAY DIFFRACTION' 1 1 'MEDIUM POSITIONAL' A 1360 0.230 0.500 1 ? ? ? 'X-RAY DIFFRACTION' 1 1 'MEDIUM THERMAL' A 1360 2.310 2.000 2 ? ? ? # _refine_ls_shell.d_res_high 2.1800 _refine_ls_shell.d_res_low 2.2360 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.8800 _refine_ls_shell.number_reflns_R_work 809 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2520 _refine_ls_shell.R_factor_R_free 0.2890 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 40 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 849 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 4 A 372 A 437 ? . . . . . . . . 1 2 1 4 B 372 B 437 ? . . . . . . . . 1 1 2 4 A 445 A 483 ? . . . . . . . . 1 2 2 4 B 445 B 483 ? . . . . . . . . # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3U21 _struct.title ;Crystal structure of a Fragment of Nuclear factor related to kappa-B-binding protein (residues 370-495) (NFRKB) from Homo sapiens at 2.18 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;DNA/RNA-binding 3-helical bundle, winged-HTH domain, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, Transcription regulation, DNA BINDING PROTEIN, DNA BINDING, Partnership for Stem Cell Biology, STEMCELL ; _struct_keywords.pdbx_keywords 'Transcription regulation, DNA BINDING' _struct_keywords.entry_id 3U21 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 10 ? LEU A 21 ? SER A 378 LEU A 389 1 ? 12 HELX_P HELX_P2 2 LEU A 27 ? SER A 39 ? LEU A 395 SER A 407 1 ? 13 HELX_P HELX_P3 3 SER A 40 ? ASN A 46 ? SER A 408 ASN A 414 5 ? 7 HELX_P HELX_P4 4 TRP A 48 ? ALA A 52 ? TRP A 416 ALA A 420 5 ? 5 HELX_P HELX_P5 5 TRP A 55 ? GLU A 57 ? TRP A 423 GLU A 425 5 ? 3 HELX_P HELX_P6 6 LEU A 58 ? ALA A 67 ? LEU A 426 ALA A 435 1 ? 10 HELX_P HELX_P7 7 ASN A 99 ? MLY A 114 ? ASN A 467 MLY A 482 1 ? 16 HELX_P HELX_P8 8 SER B 10 ? SER B 23 ? SER B 378 SER B 391 1 ? 14 HELX_P HELX_P9 9 SER B 26 ? SER B 40 ? SER B 394 SER B 408 1 ? 15 HELX_P HELX_P10 10 PRO B 41 ? ASN B 46 ? PRO B 409 ASN B 414 5 ? 6 HELX_P HELX_P11 11 TRP B 48 ? ALA B 52 ? TRP B 416 ALA B 420 5 ? 5 HELX_P HELX_P12 12 ASN B 54 ? GLU B 57 ? ASN B 422 GLU B 425 5 ? 4 HELX_P HELX_P13 13 LEU B 58 ? ALA B 67 ? LEU B 426 ALA B 435 1 ? 10 HELX_P HELX_P14 14 ASN B 99 ? MLY B 114 ? ASN B 467 MLY B 482 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 28 C ? ? ? 1_555 A MSE 29 N ? ? A PRO 396 A MSE 397 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale2 covale both ? A MSE 29 C ? ? ? 1_555 A LEU 30 N ? ? A MSE 397 A LEU 398 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A PHE 83 C ? ? ? 1_555 A MLY 84 N ? ? A PHE 451 A MLY 452 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A MLY 84 C ? ? ? 1_555 A GLU 85 N ? ? A MLY 452 A GLU 453 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A GLU 85 C ? ? ? 1_555 A MLY 86 N ? ? A GLU 453 A MLY 454 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? A MLY 86 C ? ? ? 1_555 A THR 87 N ? ? A MLY 454 A THR 455 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale7 covale both ? A TRP 90 C ? ? ? 1_555 A MLY 91 N ? ? A TRP 458 A MLY 459 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale8 covale both ? A MLY 91 C ? ? ? 1_555 A LEU 92 N ? ? A MLY 459 A LEU 460 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? A GLU 100 C ? ? ? 1_555 A MLY 101 N ? ? A GLU 468 A MLY 469 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale10 covale both ? A MLY 101 C ? ? ? 1_555 A GLU 102 N ? ? A MLY 469 A GLU 470 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale11 covale both ? A THR 113 C ? ? ? 1_555 A MLY 114 N ? ? A THR 481 A MLY 482 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale12 covale both ? A MLY 114 C ? ? ? 1_555 A ASP 115 N ? ? A MLY 482 A ASP 483 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale13 covale both ? B PRO 28 C ? ? ? 1_555 B MSE 29 N ? ? B PRO 396 B MSE 397 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale14 covale both ? B MSE 29 C ? ? ? 1_555 B LEU 30 N ? ? B MSE 397 B LEU 398 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale15 covale both ? B PHE 83 C ? ? ? 1_555 B MLY 84 N ? ? B PHE 451 B MLY 452 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale16 covale both ? B MLY 84 C ? ? ? 1_555 B GLU 85 N ? ? B MLY 452 B GLU 453 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale17 covale both ? B GLU 85 C ? ? ? 1_555 B MLY 86 N ? ? B GLU 453 B MLY 454 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale18 covale both ? B MLY 86 C ? ? ? 1_555 B THR 87 N ? ? B MLY 454 B THR 455 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale19 covale both ? B TRP 90 C ? ? ? 1_555 B MLY 91 N ? ? B TRP 458 B MLY 459 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale20 covale both ? B MLY 91 C ? ? ? 1_555 B LEU 92 N ? ? B MLY 459 B LEU 460 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale21 covale both ? B GLU 100 C ? ? ? 1_555 B MLY 101 N ? ? B GLU 468 B MLY 469 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale22 covale both ? B MLY 101 C ? ? ? 1_555 B GLU 102 N ? ? B MLY 469 B GLU 470 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale23 covale both ? B THR 113 C ? ? ? 1_555 B MLY 114 N ? ? B THR 481 B MLY 482 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale24 covale both ? B MLY 114 C ? ? ? 1_555 B ASP 115 N ? ? B MLY 482 B ASP 483 1_555 ? ? ? ? ? ? ? 1.331 ? ? metalc1 metalc ? ? A ASN 5 OD1 ? ? ? 1_555 C NA . NA ? ? A ASN 373 A NA 500 1_555 ? ? ? ? ? ? ? 2.395 ? ? metalc2 metalc ? ? A ILE 7 O ? ? ? 1_555 C NA . NA ? ? A ILE 375 A NA 500 1_555 ? ? ? ? ? ? ? 2.373 ? ? metalc3 metalc ? ? C NA . NA ? ? ? 1_555 B ASN 5 OD1 ? ? A NA 500 B ASN 373 1_555 ? ? ? ? ? ? ? 2.285 ? ? metalc4 metalc ? ? C NA . NA ? ? ? 1_555 B ILE 7 O ? ? A NA 500 B ILE 375 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc5 metalc ? ? C NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 500 B HOH 521 1_555 ? ? ? ? ? ? ? 2.273 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 24 ? SER A 26 ? GLN A 392 SER A 394 A 2 GLN A 89 ? LEU A 92 ? GLN A 457 LEU A 460 A 3 VAL A 81 ? MLY A 84 ? VAL A 449 MLY A 452 B 1 GLN B 24 ? ALA B 25 ? GLN B 392 ALA B 393 B 2 GLN B 89 ? LEU B 92 ? GLN B 457 LEU B 460 B 3 VAL B 81 ? MLY B 84 ? VAL B 449 MLY B 452 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 25 ? N ALA A 393 O TRP A 90 ? O TRP A 458 A 2 3 O MLY A 91 ? O MLY A 459 N GLU A 82 ? N GLU A 450 B 1 2 N ALA B 25 ? N ALA B 393 O TRP B 90 ? O TRP B 458 B 2 3 O MLY B 91 ? O MLY B 459 N GLU B 82 ? N GLU B 450 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NA _struct_site.pdbx_auth_seq_id 500 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE NA A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 5 ? ASN A 373 . ? 1_555 ? 2 AC1 5 ILE A 7 ? ILE A 375 . ? 1_555 ? 3 AC1 5 ASN B 5 ? ASN B 373 . ? 1_555 ? 4 AC1 5 ILE B 7 ? ILE B 375 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH B 521 . ? 1_555 ? # _atom_sites.entry_id 3U21 _atom_sites.fract_transf_matrix[1][1] 0.016409 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016409 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007643 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 LEU 2 370 ? ? ? A . n A 1 3 GLY 3 371 ? ? ? A . n A 1 4 ILE 4 372 372 ILE ILE A . n A 1 5 ASN 5 373 373 ASN ASN A . n A 1 6 GLU 6 374 374 GLU GLU A . n A 1 7 ILE 7 375 375 ILE ILE A . n A 1 8 SER 8 376 376 SER SER A . n A 1 9 SER 9 377 377 SER SER A . n A 1 10 SER 10 378 378 SER SER A . n A 1 11 PHE 11 379 379 PHE PHE A . n A 1 12 PHE 12 380 380 PHE PHE A . n A 1 13 SER 13 381 381 SER SER A . n A 1 14 LEU 14 382 382 LEU LEU A . n A 1 15 LEU 15 383 383 LEU LEU A . n A 1 16 LEU 16 384 384 LEU LEU A . n A 1 17 GLU 17 385 385 GLU GLU A . n A 1 18 ILE 18 386 386 ILE ILE A . n A 1 19 LEU 19 387 387 LEU LEU A . n A 1 20 LEU 20 388 388 LEU LEU A . n A 1 21 LEU 21 389 389 LEU LEU A . n A 1 22 GLU 22 390 390 GLU GLU A . n A 1 23 SER 23 391 391 SER SER A . n A 1 24 GLN 24 392 392 GLN GLN A . n A 1 25 ALA 25 393 393 ALA ALA A . n A 1 26 SER 26 394 394 SER SER A . n A 1 27 LEU 27 395 395 LEU LEU A . n A 1 28 PRO 28 396 396 PRO PRO A . n A 1 29 MSE 29 397 397 MSE MSE A . n A 1 30 LEU 30 398 398 LEU LEU A . n A 1 31 GLU 31 399 399 GLU GLU A . n A 1 32 GLU 32 400 400 GLU GLU A . n A 1 33 ARG 33 401 401 ARG ARG A . n A 1 34 VAL 34 402 402 VAL VAL A . n A 1 35 LEU 35 403 403 LEU LEU A . n A 1 36 ASP 36 404 404 ASP ASP A . n A 1 37 TRP 37 405 405 TRP TRP A . n A 1 38 GLN 38 406 406 GLN GLN A . n A 1 39 SER 39 407 407 SER SER A . n A 1 40 SER 40 408 408 SER SER A . n A 1 41 PRO 41 409 409 PRO PRO A . n A 1 42 ALA 42 410 410 ALA ALA A . n A 1 43 SER 43 411 411 SER SER A . n A 1 44 SER 44 412 412 SER SER A . n A 1 45 LEU 45 413 413 LEU LEU A . n A 1 46 ASN 46 414 414 ASN ASN A . n A 1 47 SER 47 415 415 SER SER A . n A 1 48 TRP 48 416 416 TRP TRP A . n A 1 49 PHE 49 417 417 PHE PHE A . n A 1 50 SER 50 418 418 SER SER A . n A 1 51 ALA 51 419 419 ALA ALA A . n A 1 52 ALA 52 420 420 ALA ALA A . n A 1 53 PRO 53 421 421 PRO PRO A . n A 1 54 ASN 54 422 422 ASN ASN A . n A 1 55 TRP 55 423 423 TRP TRP A . n A 1 56 ALA 56 424 424 ALA ALA A . n A 1 57 GLU 57 425 425 GLU GLU A . n A 1 58 LEU 58 426 426 LEU LEU A . n A 1 59 VAL 59 427 427 VAL VAL A . n A 1 60 LEU 60 428 428 LEU LEU A . n A 1 61 PRO 61 429 429 PRO PRO A . n A 1 62 ALA 62 430 430 ALA ALA A . n A 1 63 LEU 63 431 431 LEU LEU A . n A 1 64 GLN 64 432 432 GLN GLN A . n A 1 65 TYR 65 433 433 TYR TYR A . n A 1 66 LEU 66 434 434 LEU LEU A . n A 1 67 ALA 67 435 435 ALA ALA A . n A 1 68 GLY 68 436 436 GLY GLY A . n A 1 69 GLU 69 437 437 GLU GLU A . n A 1 70 SER 70 438 438 SER SER A . n A 1 71 ARG 71 439 439 ARG ARG A . n A 1 72 ALA 72 440 440 ALA ALA A . n A 1 73 VAL 73 441 441 VAL VAL A . n A 1 74 PRO 74 442 442 PRO PRO A . n A 1 75 SER 75 443 443 SER SER A . n A 1 76 SER 76 444 444 SER SER A . n A 1 77 PHE 77 445 445 PHE PHE A . n A 1 78 SER 78 446 446 SER SER A . n A 1 79 PRO 79 447 447 PRO PRO A . n A 1 80 PHE 80 448 448 PHE PHE A . n A 1 81 VAL 81 449 449 VAL VAL A . n A 1 82 GLU 82 450 450 GLU GLU A . n A 1 83 PHE 83 451 451 PHE PHE A . n A 1 84 MLY 84 452 452 MLY MLY A . n A 1 85 GLU 85 453 453 GLU GLU A . n A 1 86 MLY 86 454 454 MLY MLY A . n A 1 87 THR 87 455 455 THR THR A . n A 1 88 GLN 88 456 456 GLN GLN A . n A 1 89 GLN 89 457 457 GLN GLN A . n A 1 90 TRP 90 458 458 TRP TRP A . n A 1 91 MLY 91 459 459 MLY MLY A . n A 1 92 LEU 92 460 460 LEU LEU A . n A 1 93 LEU 93 461 461 LEU LEU A . n A 1 94 GLY 94 462 462 GLY GLY A . n A 1 95 GLN 95 463 ? ? ? A . n A 1 96 SER 96 464 ? ? ? A . n A 1 97 GLN 97 465 ? ? ? A . n A 1 98 ASP 98 466 466 ASP ASP A . n A 1 99 ASN 99 467 467 ASN ASN A . n A 1 100 GLU 100 468 468 GLU GLU A . n A 1 101 MLY 101 469 469 MLY MLY A . n A 1 102 GLU 102 470 470 GLU GLU A . n A 1 103 LEU 103 471 471 LEU LEU A . n A 1 104 ALA 104 472 472 ALA ALA A . n A 1 105 ALA 105 473 473 ALA ALA A . n A 1 106 LEU 106 474 474 LEU LEU A . n A 1 107 PHE 107 475 475 PHE PHE A . n A 1 108 GLN 108 476 476 GLN GLN A . n A 1 109 LEU 109 477 477 LEU LEU A . n A 1 110 TRP 110 478 478 TRP TRP A . n A 1 111 LEU 111 479 479 LEU LEU A . n A 1 112 GLU 112 480 480 GLU GLU A . n A 1 113 THR 113 481 481 THR THR A . n A 1 114 MLY 114 482 482 MLY MLY A . n A 1 115 ASP 115 483 483 ASP ASP A . n A 1 116 GLN 116 484 ? ? ? A . n A 1 117 ALA 117 485 ? ? ? A . n A 1 118 PHE 118 486 ? ? ? A . n A 1 119 CYS 119 487 ? ? ? A . n A 1 120 MLY 120 488 ? ? ? A . n A 1 121 GLN 121 489 ? ? ? A . n A 1 122 GLU 122 490 ? ? ? A . n A 1 123 ASN 123 491 ? ? ? A . n A 1 124 GLU 124 492 ? ? ? A . n A 1 125 ASP 125 493 ? ? ? A . n A 1 126 SER 126 494 ? ? ? A . n A 1 127 SER 127 495 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 LEU 2 370 370 LEU LEU B . n B 1 3 GLY 3 371 371 GLY GLY B . n B 1 4 ILE 4 372 372 ILE ILE B . n B 1 5 ASN 5 373 373 ASN ASN B . n B 1 6 GLU 6 374 374 GLU GLU B . n B 1 7 ILE 7 375 375 ILE ILE B . n B 1 8 SER 8 376 376 SER SER B . n B 1 9 SER 9 377 377 SER SER B . n B 1 10 SER 10 378 378 SER SER B . n B 1 11 PHE 11 379 379 PHE PHE B . n B 1 12 PHE 12 380 380 PHE PHE B . n B 1 13 SER 13 381 381 SER SER B . n B 1 14 LEU 14 382 382 LEU LEU B . n B 1 15 LEU 15 383 383 LEU LEU B . n B 1 16 LEU 16 384 384 LEU LEU B . n B 1 17 GLU 17 385 385 GLU GLU B . n B 1 18 ILE 18 386 386 ILE ILE B . n B 1 19 LEU 19 387 387 LEU LEU B . n B 1 20 LEU 20 388 388 LEU LEU B . n B 1 21 LEU 21 389 389 LEU LEU B . n B 1 22 GLU 22 390 390 GLU GLU B . n B 1 23 SER 23 391 391 SER SER B . n B 1 24 GLN 24 392 392 GLN GLN B . n B 1 25 ALA 25 393 393 ALA ALA B . n B 1 26 SER 26 394 394 SER SER B . n B 1 27 LEU 27 395 395 LEU LEU B . n B 1 28 PRO 28 396 396 PRO PRO B . n B 1 29 MSE 29 397 397 MSE MSE B . n B 1 30 LEU 30 398 398 LEU LEU B . n B 1 31 GLU 31 399 399 GLU GLU B . n B 1 32 GLU 32 400 400 GLU GLU B . n B 1 33 ARG 33 401 401 ARG ARG B . n B 1 34 VAL 34 402 402 VAL VAL B . n B 1 35 LEU 35 403 403 LEU LEU B . n B 1 36 ASP 36 404 404 ASP ASP B . n B 1 37 TRP 37 405 405 TRP TRP B . n B 1 38 GLN 38 406 406 GLN GLN B . n B 1 39 SER 39 407 407 SER SER B . n B 1 40 SER 40 408 408 SER SER B . n B 1 41 PRO 41 409 409 PRO PRO B . n B 1 42 ALA 42 410 410 ALA ALA B . n B 1 43 SER 43 411 411 SER SER B . n B 1 44 SER 44 412 412 SER SER B . n B 1 45 LEU 45 413 413 LEU LEU B . n B 1 46 ASN 46 414 414 ASN ASN B . n B 1 47 SER 47 415 415 SER SER B . n B 1 48 TRP 48 416 416 TRP TRP B . n B 1 49 PHE 49 417 417 PHE PHE B . n B 1 50 SER 50 418 418 SER SER B . n B 1 51 ALA 51 419 419 ALA ALA B . n B 1 52 ALA 52 420 420 ALA ALA B . n B 1 53 PRO 53 421 421 PRO PRO B . n B 1 54 ASN 54 422 422 ASN ASN B . n B 1 55 TRP 55 423 423 TRP TRP B . n B 1 56 ALA 56 424 424 ALA ALA B . n B 1 57 GLU 57 425 425 GLU GLU B . n B 1 58 LEU 58 426 426 LEU LEU B . n B 1 59 VAL 59 427 427 VAL VAL B . n B 1 60 LEU 60 428 428 LEU LEU B . n B 1 61 PRO 61 429 429 PRO PRO B . n B 1 62 ALA 62 430 430 ALA ALA B . n B 1 63 LEU 63 431 431 LEU LEU B . n B 1 64 GLN 64 432 432 GLN GLN B . n B 1 65 TYR 65 433 433 TYR TYR B . n B 1 66 LEU 66 434 434 LEU LEU B . n B 1 67 ALA 67 435 435 ALA ALA B . n B 1 68 GLY 68 436 436 GLY GLY B . n B 1 69 GLU 69 437 437 GLU GLU B . n B 1 70 SER 70 438 438 SER SER B . n B 1 71 ARG 71 439 439 ARG ARG B . n B 1 72 ALA 72 440 ? ? ? B . n B 1 73 VAL 73 441 ? ? ? B . n B 1 74 PRO 74 442 ? ? ? B . n B 1 75 SER 75 443 ? ? ? B . n B 1 76 SER 76 444 444 SER SER B . n B 1 77 PHE 77 445 445 PHE PHE B . n B 1 78 SER 78 446 446 SER SER B . n B 1 79 PRO 79 447 447 PRO PRO B . n B 1 80 PHE 80 448 448 PHE PHE B . n B 1 81 VAL 81 449 449 VAL VAL B . n B 1 82 GLU 82 450 450 GLU GLU B . n B 1 83 PHE 83 451 451 PHE PHE B . n B 1 84 MLY 84 452 452 MLY MLY B . n B 1 85 GLU 85 453 453 GLU GLU B . n B 1 86 MLY 86 454 454 MLY MLY B . n B 1 87 THR 87 455 455 THR THR B . n B 1 88 GLN 88 456 456 GLN GLN B . n B 1 89 GLN 89 457 457 GLN GLN B . n B 1 90 TRP 90 458 458 TRP TRP B . n B 1 91 MLY 91 459 459 MLY MLY B . n B 1 92 LEU 92 460 460 LEU LEU B . n B 1 93 LEU 93 461 461 LEU LEU B . n B 1 94 GLY 94 462 ? ? ? B . n B 1 95 GLN 95 463 ? ? ? B . n B 1 96 SER 96 464 464 SER SER B . n B 1 97 GLN 97 465 465 GLN GLN B . n B 1 98 ASP 98 466 466 ASP ASP B . n B 1 99 ASN 99 467 467 ASN ASN B . n B 1 100 GLU 100 468 468 GLU GLU B . n B 1 101 MLY 101 469 469 MLY MLY B . n B 1 102 GLU 102 470 470 GLU GLU B . n B 1 103 LEU 103 471 471 LEU LEU B . n B 1 104 ALA 104 472 472 ALA ALA B . n B 1 105 ALA 105 473 473 ALA ALA B . n B 1 106 LEU 106 474 474 LEU LEU B . n B 1 107 PHE 107 475 475 PHE PHE B . n B 1 108 GLN 108 476 476 GLN GLN B . n B 1 109 LEU 109 477 477 LEU LEU B . n B 1 110 TRP 110 478 478 TRP TRP B . n B 1 111 LEU 111 479 479 LEU LEU B . n B 1 112 GLU 112 480 480 GLU GLU B . n B 1 113 THR 113 481 481 THR THR B . n B 1 114 MLY 114 482 482 MLY MLY B . n B 1 115 ASP 115 483 483 ASP ASP B . n B 1 116 GLN 116 484 ? ? ? B . n B 1 117 ALA 117 485 ? ? ? B . n B 1 118 PHE 118 486 ? ? ? B . n B 1 119 CYS 119 487 ? ? ? B . n B 1 120 MLY 120 488 ? ? ? B . n B 1 121 GLN 121 489 ? ? ? B . n B 1 122 GLU 122 490 ? ? ? B . n B 1 123 ASN 123 491 ? ? ? B . n B 1 124 GLU 124 492 ? ? ? B . n B 1 125 ASP 125 493 ? ? ? B . n B 1 126 SER 126 494 ? ? ? B . n B 1 127 SER 127 495 ? ? ? B . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for Stem Cell Biology' 2 STEMCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 500 500 NA NA A . D 3 HOH 1 501 501 HOH HOH A . D 3 HOH 2 502 502 HOH HOH A . D 3 HOH 3 503 503 HOH HOH A . D 3 HOH 4 504 504 HOH HOH A . D 3 HOH 5 505 505 HOH HOH A . D 3 HOH 6 506 506 HOH HOH A . D 3 HOH 7 507 507 HOH HOH A . D 3 HOH 8 508 508 HOH HOH A . D 3 HOH 9 509 509 HOH HOH A . D 3 HOH 10 511 511 HOH HOH A . D 3 HOH 11 523 523 HOH HOH A . D 3 HOH 12 524 524 HOH HOH A . D 3 HOH 13 525 525 HOH HOH A . E 3 HOH 1 510 510 HOH HOH B . E 3 HOH 2 512 512 HOH HOH B . E 3 HOH 3 513 513 HOH HOH B . E 3 HOH 4 514 514 HOH HOH B . E 3 HOH 5 515 515 HOH HOH B . E 3 HOH 6 516 516 HOH HOH B . E 3 HOH 7 517 517 HOH HOH B . E 3 HOH 8 518 518 HOH HOH B . E 3 HOH 9 519 519 HOH HOH B . E 3 HOH 10 520 520 HOH HOH B . E 3 HOH 11 521 521 HOH HOH B . E 3 HOH 12 522 522 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 29 A MSE 397 ? MET SELENOMETHIONINE 2 A MLY 84 A MLY 452 ? LYS N-DIMETHYL-LYSINE 3 A MLY 86 A MLY 454 ? LYS N-DIMETHYL-LYSINE 4 A MLY 91 A MLY 459 ? LYS N-DIMETHYL-LYSINE 5 A MLY 101 A MLY 469 ? LYS N-DIMETHYL-LYSINE 6 A MLY 114 A MLY 482 ? LYS N-DIMETHYL-LYSINE 7 B MSE 29 B MSE 397 ? MET SELENOMETHIONINE 8 B MLY 84 B MLY 452 ? LYS N-DIMETHYL-LYSINE 9 B MLY 86 B MLY 454 ? LYS N-DIMETHYL-LYSINE 10 B MLY 91 B MLY 459 ? LYS N-DIMETHYL-LYSINE 11 B MLY 101 B MLY 469 ? LYS N-DIMETHYL-LYSINE 12 B MLY 114 B MLY 482 ? LYS N-DIMETHYL-LYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1510 ? 1 MORE -23 ? 1 'SSA (A^2)' 11610 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASN 5 ? A ASN 373 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? A ILE 7 ? A ILE 375 ? 1_555 91.6 ? 2 OD1 ? A ASN 5 ? A ASN 373 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 OD1 ? B ASN 5 ? B ASN 373 ? 1_555 171.4 ? 3 O ? A ILE 7 ? A ILE 375 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 OD1 ? B ASN 5 ? B ASN 373 ? 1_555 88.2 ? 4 OD1 ? A ASN 5 ? A ASN 373 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? B ILE 7 ? B ILE 375 ? 1_555 94.2 ? 5 O ? A ILE 7 ? A ILE 375 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? B ILE 7 ? B ILE 375 ? 1_555 102.9 ? 6 OD1 ? B ASN 5 ? B ASN 373 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? B ILE 7 ? B ILE 375 ? 1_555 94.3 ? 7 OD1 ? A ASN 5 ? A ASN 373 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? E HOH . ? B HOH 521 ? 1_555 94.7 ? 8 O ? A ILE 7 ? A ILE 375 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? E HOH . ? B HOH 521 ? 1_555 164.8 ? 9 OD1 ? B ASN 5 ? B ASN 373 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? E HOH . ? B HOH 521 ? 1_555 83.5 ? 10 O ? B ILE 7 ? B ILE 375 ? 1_555 NA ? C NA . ? A NA 500 ? 1_555 O ? E HOH . ? B HOH 521 ? 1_555 90.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-02 2 'Structure model' 1 1 2012-10-10 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.value' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_ref_seq_dif.details' 37 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 38 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 39 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 61.0380 45.3410 53.3450 0.1040 0.0908 0.0800 -0.0072 -0.0181 -0.0191 1.0635 5.4284 4.0382 0.6754 -0.2069 0.1736 -0.0925 0.1532 -0.0607 0.0321 0.1089 -0.2375 -0.0577 -0.3529 0.0032 'X-RAY DIFFRACTION' 2 ? refined 48.6910 30.9920 75.4320 0.0991 0.1636 0.0509 0.0091 -0.0305 0.0487 3.0864 2.0962 4.4276 0.5889 -0.5343 -0.3884 0.0515 0.1051 -0.1566 -0.2075 -0.0591 0.1458 0.0171 0.0318 -0.5040 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 372 A 462 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 466 A 483 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 B 370 B 461 ? . . . . ? 'X-RAY DIFFRACTION' 4 2 B 464 B 483 ? . . . . ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 6, 2010' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 REFMAC 5.6.0116 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 3U21 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;1. THIS CONSTRUCT (RESIDUES 370-495) WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. RESIDUE NUMBERING IS BASED ON ISOFORM 1 OF UNIPROTKB ID Q6P4R8. 2. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR TO CRYSTALLIZATION. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 390 ? ? 75.84 -47.01 2 1 SER A 391 ? ? 70.91 -47.25 3 1 SER A 444 ? ? -98.95 45.58 4 1 SER B 391 ? ? 74.11 -58.79 5 1 ASP B 466 ? ? 64.73 -1.97 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 439 ? CG ? A ARG 71 CG 2 1 Y 1 A ARG 439 ? CD ? A ARG 71 CD 3 1 Y 1 A ARG 439 ? NE ? A ARG 71 NE 4 1 Y 1 A ARG 439 ? CZ ? A ARG 71 CZ 5 1 Y 1 A ARG 439 ? NH1 ? A ARG 71 NH1 6 1 Y 1 A ARG 439 ? NH2 ? A ARG 71 NH2 7 1 Y 1 A MLY 454 ? CG ? A MLY 86 CG 8 1 Y 1 A MLY 454 ? CD ? A MLY 86 CD 9 1 Y 1 A MLY 454 ? CE ? A MLY 86 CE 10 1 Y 1 A MLY 454 ? NZ ? A MLY 86 NZ 11 1 Y 1 A MLY 454 ? CH1 ? A MLY 86 CH1 12 1 Y 1 A MLY 454 ? CH2 ? A MLY 86 CH2 13 1 Y 1 B ILE 372 ? CG1 ? B ILE 4 CG1 14 1 Y 1 B ILE 372 ? CG2 ? B ILE 4 CG2 15 1 Y 1 B ILE 372 ? CD1 ? B ILE 4 CD1 16 1 Y 1 B ARG 439 ? CG ? B ARG 71 CG 17 1 Y 1 B ARG 439 ? CD ? B ARG 71 CD 18 1 Y 1 B ARG 439 ? NE ? B ARG 71 NE 19 1 Y 1 B ARG 439 ? CZ ? B ARG 71 CZ 20 1 Y 1 B ARG 439 ? NH1 ? B ARG 71 NH1 21 1 Y 1 B ARG 439 ? NH2 ? B ARG 71 NH2 22 1 Y 1 B MLY 454 ? CG ? B MLY 86 CG 23 1 Y 1 B MLY 454 ? CD ? B MLY 86 CD 24 1 Y 1 B MLY 454 ? CE ? B MLY 86 CE 25 1 Y 1 B MLY 454 ? NZ ? B MLY 86 NZ 26 1 Y 1 B MLY 454 ? CH1 ? B MLY 86 CH1 27 1 Y 1 B MLY 454 ? CH2 ? B MLY 86 CH2 28 1 Y 1 B GLN 465 ? CG ? B GLN 97 CG 29 1 Y 1 B GLN 465 ? CD ? B GLN 97 CD 30 1 Y 1 B GLN 465 ? OE1 ? B GLN 97 OE1 31 1 Y 1 B GLN 465 ? NE2 ? B GLN 97 NE2 32 1 Y 1 B ASP 483 ? CG ? B ASP 115 CG 33 1 Y 1 B ASP 483 ? OD1 ? B ASP 115 OD1 34 1 Y 1 B ASP 483 ? OD2 ? B ASP 115 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A LEU 370 ? A LEU 2 3 1 Y 1 A GLY 371 ? A GLY 3 4 1 Y 1 A GLN 463 ? A GLN 95 5 1 Y 1 A SER 464 ? A SER 96 6 1 Y 1 A GLN 465 ? A GLN 97 7 1 Y 1 A GLN 484 ? A GLN 116 8 1 Y 1 A ALA 485 ? A ALA 117 9 1 Y 1 A PHE 486 ? A PHE 118 10 1 Y 1 A CYS 487 ? A CYS 119 11 1 Y 1 A MLY 488 ? A MLY 120 12 1 Y 1 A GLN 489 ? A GLN 121 13 1 Y 1 A GLU 490 ? A GLU 122 14 1 Y 1 A ASN 491 ? A ASN 123 15 1 Y 1 A GLU 492 ? A GLU 124 16 1 Y 1 A ASP 493 ? A ASP 125 17 1 Y 1 A SER 494 ? A SER 126 18 1 Y 1 A SER 495 ? A SER 127 19 1 Y 1 B GLY 0 ? B GLY 1 20 1 Y 1 B ALA 440 ? B ALA 72 21 1 Y 1 B VAL 441 ? B VAL 73 22 1 Y 1 B PRO 442 ? B PRO 74 23 1 Y 1 B SER 443 ? B SER 75 24 1 Y 1 B GLY 462 ? B GLY 94 25 1 Y 1 B GLN 463 ? B GLN 95 26 1 Y 1 B GLN 484 ? B GLN 116 27 1 Y 1 B ALA 485 ? B ALA 117 28 1 Y 1 B PHE 486 ? B PHE 118 29 1 Y 1 B CYS 487 ? B CYS 119 30 1 Y 1 B MLY 488 ? B MLY 120 31 1 Y 1 B GLN 489 ? B GLN 121 32 1 Y 1 B GLU 490 ? B GLU 122 33 1 Y 1 B ASN 491 ? B ASN 123 34 1 Y 1 B GLU 492 ? B GLU 124 35 1 Y 1 B ASP 493 ? B ASP 125 36 1 Y 1 B SER 494 ? B SER 126 37 1 Y 1 B SER 495 ? B SER 127 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 water HOH #