HEADER ISOMERASE/PROTEIN BINDING 02-OCT-11 3U28 TITLE CRYSTAL STRUCTURE OF A CBF5-NOP10-GAR1 COMPLEX FROM SACCHAROMYCES TITLE 2 CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 3-394; COMPND 5 SYNONYM: CENTROMERE-BINDING FACTOR 5, CENTROMERE/MICROTUBULE-BINDING COMPND 6 PROTEIN CBF5, H/ACA SNORNP PROTEIN CBF5, SMALL NUCLEOLAR RNP PROTEIN COMPND 7 CBF5, P64'; COMPND 8 EC: 5.4.99.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 3; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: NUCLEOLAR PROTEIN 10, NUCLEOLAR PROTEIN FAMILY A MEMBER 3, COMPND 14 SNORNP PROTEIN NOP10; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 1; COMPND 18 CHAIN: C; COMPND 19 FRAGMENT: UNP RESIDUES 32-124; COMPND 20 SYNONYM: SNORNP PROTEIN GAR1; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: CBF5; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETDUET-1; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: YEAST; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 STRAIN: ATCC 204508 / S288C; SOURCE 17 GENE: NOP10; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PETDUET-1; SOURCE 23 MOL_ID: 3; SOURCE 24 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 25 ORGANISM_COMMON: YEAST; SOURCE 26 ORGANISM_TAXID: 559292; SOURCE 27 STRAIN: ATCC 204508 / S288C; SOURCE 28 GENE: GAR1; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 31 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 32 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 33 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PSEUDOURIDINE SYNTHASE, PSEUDOURIDYLATION, H/ACA RNA, NUCLEOLUS, KEYWDS 2 ISOMERASE-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.YE,S.LI REVDAT 2 01-NOV-23 3U28 1 SEQADV REVDAT 1 14-DEC-11 3U28 0 JRNL AUTH S.LI,J.DUAN,D.LI,B.YANG,M.DONG,K.YE JRNL TITL RECONSTITUTION AND STRUCTURAL ANALYSIS OF THE YEAST BOX JRNL TITL 2 H/ACA RNA-GUIDED PSEUDOURIDINE SYNTHASE JRNL REF GENES DEV. V. 25 2409 2011 JRNL REFN ISSN 0890-9369 JRNL PMID 22085967 JRNL DOI 10.1101/GAD.175299.111 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 37603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1971 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2467 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 279 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.105 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3820 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5162 ; 1.314 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 470 ; 6.038 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;33.657 ;23.313 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 694 ;16.797 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.301 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 587 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2818 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2361 ; 0.865 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3825 ; 1.548 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1459 ; 1.976 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1337 ; 3.352 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9190 -4.3120 -29.3560 REMARK 3 T TENSOR REMARK 3 T11: 0.1362 T22: 0.0865 REMARK 3 T33: 0.0808 T12: -0.0066 REMARK 3 T13: -0.0107 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.2429 L22: 0.2320 REMARK 3 L33: 1.4652 L12: -0.0546 REMARK 3 L13: -0.4653 L23: 0.0193 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0349 S13: 0.0198 REMARK 3 S21: 0.0521 S22: 0.0046 S23: -0.0323 REMARK 3 S31: -0.0479 S32: 0.1006 S33: -0.0048 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6320 -27.5410 -2.3580 REMARK 3 T TENSOR REMARK 3 T11: 0.3494 T22: 1.7864 REMARK 3 T33: 1.1917 T12: -0.1045 REMARK 3 T13: -0.0473 T23: 0.5182 REMARK 3 L TENSOR REMARK 3 L11: 12.3501 L22: 0.0490 REMARK 3 L33: 19.2938 L12: 0.7535 REMARK 3 L13: -15.4247 L23: -0.9435 REMARK 3 S TENSOR REMARK 3 S11: 1.5805 S12: -1.4240 S13: 0.4507 REMARK 3 S21: 0.1101 S22: -0.4875 S23: 0.0756 REMARK 3 S31: -2.4585 S32: 1.5842 S33: -1.0930 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 51 REMARK 3 RESIDUE RANGE : A 259 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5030 -27.9220 -7.8790 REMARK 3 T TENSOR REMARK 3 T11: 0.1413 T22: 0.1038 REMARK 3 T33: 0.0499 T12: -0.0078 REMARK 3 T13: -0.0171 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.0359 L22: 1.9296 REMARK 3 L33: 1.2705 L12: -0.7075 REMARK 3 L13: 0.0778 L23: 0.4575 REMARK 3 S TENSOR REMARK 3 S11: 0.0456 S12: -0.0382 S13: -0.0833 REMARK 3 S21: 0.0954 S22: 0.0070 S23: -0.0008 REMARK 3 S31: 0.0673 S32: 0.0304 S33: -0.0526 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 33 C 124 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3020 -9.7660 -54.8620 REMARK 3 T TENSOR REMARK 3 T11: 0.1180 T22: 0.0864 REMARK 3 T33: 0.0786 T12: -0.0099 REMARK 3 T13: 0.0025 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.9217 L22: 1.1525 REMARK 3 L33: 0.8287 L12: 0.1758 REMARK 3 L13: -0.2500 L23: -0.3511 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.0639 S13: -0.0462 REMARK 3 S21: -0.0334 S22: 0.0207 S23: -0.0883 REMARK 3 S31: -0.0106 S32: 0.0513 S33: 0.0049 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1610 -0.9490 -37.1460 REMARK 3 T TENSOR REMARK 3 T11: 0.1250 T22: 0.0780 REMARK 3 T33: 0.0836 T12: 0.0004 REMARK 3 T13: 0.0071 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.8785 L22: 1.7641 REMARK 3 L33: 2.0071 L12: -1.1096 REMARK 3 L13: 1.5633 L23: -0.3315 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -0.0938 S13: -0.0775 REMARK 3 S21: 0.0544 S22: -0.0402 S23: 0.1822 REMARK 3 S31: 0.0115 S32: -0.0893 S33: 0.0560 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 48 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3910 12.1810 -16.7640 REMARK 3 T TENSOR REMARK 3 T11: 0.3996 T22: 0.0274 REMARK 3 T33: 0.3196 T12: 0.0311 REMARK 3 T13: -0.1517 T23: -0.0640 REMARK 3 L TENSOR REMARK 3 L11: 7.2373 L22: 2.6213 REMARK 3 L33: 5.7279 L12: -2.8219 REMARK 3 L13: -0.7859 L23: -1.4607 REMARK 3 S TENSOR REMARK 3 S11: -0.4457 S12: -0.3035 S13: 0.5685 REMARK 3 S21: 0.2186 S22: 0.1597 S23: 0.1240 REMARK 3 S31: -0.9486 S32: -0.1659 S33: 0.2860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3U28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.04 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39859 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2HVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM MALONATE, 7%(W/V) REMARK 280 POLYETHYLENE GLYCOL 3350, PH 8.04, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.20650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.60600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.69300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.60600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.20650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.69300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 SER A 16 REMARK 465 THR A 17 REMARK 465 LEU A 156 REMARK 465 ILE A 157 REMARK 465 SER A 158 REMARK 465 ALA A 159 REMARK 465 VAL A 160 REMARK 465 GLY A 351 REMARK 465 LEU A 352 REMARK 465 GLY A 353 REMARK 465 PRO A 354 REMARK 465 VAL A 355 REMARK 465 ALA A 356 REMARK 465 GLN A 357 REMARK 465 LYS A 358 REMARK 465 LYS A 359 REMARK 465 LYS A 360 REMARK 465 GLN A 361 REMARK 465 MET A 362 REMARK 465 LYS A 363 REMARK 465 ALA A 364 REMARK 465 ASP A 365 REMARK 465 GLY A 366 REMARK 465 LYS A 367 REMARK 465 LEU A 368 REMARK 465 ASP A 369 REMARK 465 LYS A 370 REMARK 465 TYR A 371 REMARK 465 GLY A 372 REMARK 465 ARG A 373 REMARK 465 VAL A 374 REMARK 465 ASN A 375 REMARK 465 GLU A 376 REMARK 465 ASN A 377 REMARK 465 THR A 378 REMARK 465 PRO A 379 REMARK 465 GLU A 380 REMARK 465 GLN A 381 REMARK 465 TRP A 382 REMARK 465 LYS A 383 REMARK 465 LYS A 384 REMARK 465 GLU A 385 REMARK 465 TYR A 386 REMARK 465 VAL A 387 REMARK 465 PRO A 388 REMARK 465 LEU A 389 REMARK 465 ASP A 390 REMARK 465 ASN A 391 REMARK 465 ALA A 392 REMARK 465 GLU A 393 REMARK 465 GLN A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 LYS B 49 REMARK 465 LYS B 50 REMARK 465 ARG B 51 REMARK 465 PHE B 52 REMARK 465 GLY B 53 REMARK 465 LEU B 54 REMARK 465 VAL B 55 REMARK 465 PRO B 56 REMARK 465 GLY B 57 REMARK 465 GLN B 58 REMARK 465 MET C 11 REMARK 465 GLY C 12 REMARK 465 SER C 13 REMARK 465 SER C 14 REMARK 465 HIS C 15 REMARK 465 HIS C 16 REMARK 465 HIS C 17 REMARK 465 HIS C 18 REMARK 465 HIS C 19 REMARK 465 HIS C 20 REMARK 465 SER C 21 REMARK 465 SER C 22 REMARK 465 GLY C 23 REMARK 465 LEU C 24 REMARK 465 VAL C 25 REMARK 465 PRO C 26 REMARK 465 ARG C 27 REMARK 465 GLY C 28 REMARK 465 SER C 29 REMARK 465 HIS C 30 REMARK 465 MET C 31 REMARK 465 GLY C 32 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 128 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 10 5.96 -68.48 REMARK 500 LEU A 24 -120.97 53.41 REMARK 500 SER A 46 146.83 -171.10 REMARK 500 ASN A 69 -54.48 118.49 REMARK 500 CYS A 101 107.85 -57.42 REMARK 500 ASP A 107 -115.94 49.91 REMARK 500 LEU A 146 42.59 -95.03 REMARK 500 TYR B 41 30.51 -99.96 REMARK 500 LEU C 44 -65.98 -101.64 REMARK 500 ASP C 79 -79.35 -107.02 REMARK 500 GLU C 87 73.07 -153.29 REMARK 500 REMARK 500 REMARK: NULL DBREF 3U28 A 3 394 UNP P33322 CBF5_YEAST 3 394 DBREF 3U28 B 1 58 UNP Q6Q547 NOP10_YEAST 1 58 DBREF 3U28 C 32 124 UNP P28007 GAR1_YEAST 32 124 SEQADV 3U28 MET A 1 UNP P33322 EXPRESSION TAG SEQADV 3U28 ALA A 2 UNP P33322 EXPRESSION TAG SEQADV 3U28 HIS A 395 UNP P33322 EXPRESSION TAG SEQADV 3U28 HIS A 396 UNP P33322 EXPRESSION TAG SEQADV 3U28 HIS A 397 UNP P33322 EXPRESSION TAG SEQADV 3U28 HIS A 398 UNP P33322 EXPRESSION TAG SEQADV 3U28 HIS A 399 UNP P33322 EXPRESSION TAG SEQADV 3U28 HIS A 400 UNP P33322 EXPRESSION TAG SEQADV 3U28 MET C 11 UNP P28007 EXPRESSION TAG SEQADV 3U28 GLY C 12 UNP P28007 EXPRESSION TAG SEQADV 3U28 SER C 13 UNP P28007 EXPRESSION TAG SEQADV 3U28 SER C 14 UNP P28007 EXPRESSION TAG SEQADV 3U28 HIS C 15 UNP P28007 EXPRESSION TAG SEQADV 3U28 HIS C 16 UNP P28007 EXPRESSION TAG SEQADV 3U28 HIS C 17 UNP P28007 EXPRESSION TAG SEQADV 3U28 HIS C 18 UNP P28007 EXPRESSION TAG SEQADV 3U28 HIS C 19 UNP P28007 EXPRESSION TAG SEQADV 3U28 HIS C 20 UNP P28007 EXPRESSION TAG SEQADV 3U28 SER C 21 UNP P28007 EXPRESSION TAG SEQADV 3U28 SER C 22 UNP P28007 EXPRESSION TAG SEQADV 3U28 GLY C 23 UNP P28007 EXPRESSION TAG SEQADV 3U28 LEU C 24 UNP P28007 EXPRESSION TAG SEQADV 3U28 VAL C 25 UNP P28007 EXPRESSION TAG SEQADV 3U28 PRO C 26 UNP P28007 EXPRESSION TAG SEQADV 3U28 ARG C 27 UNP P28007 EXPRESSION TAG SEQADV 3U28 GLY C 28 UNP P28007 EXPRESSION TAG SEQADV 3U28 SER C 29 UNP P28007 EXPRESSION TAG SEQADV 3U28 HIS C 30 UNP P28007 EXPRESSION TAG SEQADV 3U28 MET C 31 UNP P28007 EXPRESSION TAG SEQRES 1 A 400 MET ALA LYS GLU ASP PHE VAL ILE LYS PRO GLU ALA ALA SEQRES 2 A 400 GLY ALA SER THR ASP THR SER GLU TRP PRO LEU LEU LEU SEQRES 3 A 400 LYS ASN PHE ASP LYS LEU LEU VAL ARG SER GLY HIS TYR SEQRES 4 A 400 THR PRO ILE PRO ALA GLY SER SER PRO LEU LYS ARG ASP SEQRES 5 A 400 LEU LYS SER TYR ILE SER SER GLY VAL ILE ASN LEU ASP SEQRES 6 A 400 LYS PRO SER ASN PRO SER SER HIS GLU VAL VAL ALA TRP SEQRES 7 A 400 ILE LYS ARG ILE LEU ARG CYS GLU LYS THR GLY HIS SER SEQRES 8 A 400 GLY THR LEU ASP PRO LYS VAL THR GLY CYS LEU ILE VAL SEQRES 9 A 400 CYS ILE ASP ARG ALA THR ARG LEU VAL LYS SER GLN GLN SEQRES 10 A 400 GLY ALA GLY LYS GLU TYR VAL CYS ILE VAL ARG LEU HIS SEQRES 11 A 400 ASP ALA LEU LYS ASP GLU LYS ASP LEU GLY ARG SER LEU SEQRES 12 A 400 GLU ASN LEU THR GLY ALA LEU PHE GLN ARG PRO PRO LEU SEQRES 13 A 400 ILE SER ALA VAL LYS ARG GLN LEU ARG VAL ARG THR ILE SEQRES 14 A 400 TYR GLU SER ASN LEU ILE GLU PHE ASP ASN LYS ARG ASN SEQRES 15 A 400 LEU GLY VAL PHE TRP ALA SER CYS GLU ALA GLY THR TYR SEQRES 16 A 400 MET ARG THR LEU CYS VAL HIS LEU GLY MET LEU LEU GLY SEQRES 17 A 400 VAL GLY GLY HIS MET GLN GLU LEU ARG ARG VAL ARG SER SEQRES 18 A 400 GLY ALA LEU SER GLU ASN ASP ASN MET VAL THR LEU HIS SEQRES 19 A 400 ASP VAL MET ASP ALA GLN TRP VAL TYR ASP ASN THR ARG SEQRES 20 A 400 ASP GLU SER TYR LEU ARG SER ILE ILE GLN PRO LEU GLU SEQRES 21 A 400 THR LEU LEU VAL GLY TYR LYS ARG ILE VAL VAL LYS ASP SEQRES 22 A 400 SER ALA VAL ASN ALA VAL CYS TYR GLY ALA LYS LEU MET SEQRES 23 A 400 ILE PRO GLY LEU LEU ARG TYR GLU GLU GLY ILE GLU LEU SEQRES 24 A 400 TYR ASP GLU ILE VAL LEU ILE THR THR LYS GLY GLU ALA SEQRES 25 A 400 ILE ALA VAL ALA ILE ALA GLN MET SER THR VAL ASP LEU SEQRES 26 A 400 ALA SER CYS ASP HIS GLY VAL VAL ALA SER VAL LYS ARG SEQRES 27 A 400 CYS ILE MET GLU ARG ASP LEU TYR PRO ARG ARG TRP GLY SEQRES 28 A 400 LEU GLY PRO VAL ALA GLN LYS LYS LYS GLN MET LYS ALA SEQRES 29 A 400 ASP GLY LYS LEU ASP LYS TYR GLY ARG VAL ASN GLU ASN SEQRES 30 A 400 THR PRO GLU GLN TRP LYS LYS GLU TYR VAL PRO LEU ASP SEQRES 31 A 400 ASN ALA GLU GLN HIS HIS HIS HIS HIS HIS SEQRES 1 B 58 MET HIS LEU MET TYR THR LEU GLY PRO ASP GLY LYS ARG SEQRES 2 B 58 ILE TYR THR LEU LYS LYS VAL THR GLU SER GLY GLU ILE SEQRES 3 B 58 THR LYS SER ALA HIS PRO ALA ARG PHE SER PRO ASP ASP SEQRES 4 B 58 LYS TYR SER ARG GLN ARG VAL THR LEU LYS LYS ARG PHE SEQRES 5 B 58 GLY LEU VAL PRO GLY GLN SEQRES 1 C 114 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 114 LEU VAL PRO ARG GLY SER HIS MET GLY PRO PRO ASP THR SEQRES 3 C 114 VAL LEU GLU MET GLY ALA PHE LEU HIS PRO CYS GLU GLY SEQRES 4 C 114 ASP ILE VAL CYS ARG SER ILE ASN THR LYS ILE PRO TYR SEQRES 5 C 114 PHE ASN ALA PRO ILE TYR LEU GLU ASN LYS THR GLN VAL SEQRES 6 C 114 GLY LYS VAL ASP GLU ILE LEU GLY PRO LEU ASN GLU VAL SEQRES 7 C 114 PHE PHE THR ILE LYS CYS GLY ASP GLY VAL GLN ALA THR SEQRES 8 C 114 SER PHE LYS GLU GLY ASP LYS PHE TYR ILE ALA ALA ASP SEQRES 9 C 114 LYS LEU LEU PRO ILE GLU ARG PHE LEU PRO FORMUL 4 HOH *279(H2 O) HELIX 1 1 PRO A 23 LYS A 27 5 5 HELIX 2 2 ASN A 28 LEU A 32 5 5 HELIX 3 3 SER A 47 ARG A 51 5 5 HELIX 4 4 ASP A 52 SER A 59 1 8 HELIX 5 5 SER A 71 ARG A 84 1 14 HELIX 6 6 ARG A 108 ARG A 111 5 4 HELIX 7 7 LEU A 112 ALA A 119 1 8 HELIX 8 8 LYS A 137 LEU A 146 1 10 HELIX 9 9 TYR A 195 GLY A 208 1 14 HELIX 10 10 THR A 232 ARG A 247 1 16 HELIX 11 11 GLU A 249 ILE A 256 1 8 HELIX 12 12 GLU A 260 VAL A 264 5 5 HELIX 13 13 ALA A 275 ALA A 283 1 9 HELIX 14 14 SER A 321 CYS A 328 1 8 HELIX 15 15 TYR B 41 LEU B 48 1 8 HELIX 16 16 GLN C 99 PHE C 103 5 5 HELIX 17 17 PRO C 118 LEU C 123 5 6 SHEET 1 A 7 LEU A 33 VAL A 34 0 SHEET 2 A 7 LEU A 290 TYR A 293 -1 O TYR A 293 N LEU A 33 SHEET 3 A 7 ARG A 268 VAL A 271 -1 N VAL A 270 O LEU A 291 SHEET 4 A 7 GLU A 302 ILE A 306 1 O ILE A 306 N VAL A 271 SHEET 5 A 7 ALA A 312 ALA A 318 -1 O ALA A 316 N ILE A 303 SHEET 6 A 7 VAL A 332 CYS A 339 -1 O SER A 335 N ILE A 317 SHEET 7 A 7 LYS A 284 MET A 286 -1 N LEU A 285 O VAL A 333 SHEET 1 B 4 THR A 88 HIS A 90 0 SHEET 2 B 4 THR A 99 ILE A 106 -1 O CYS A 105 N GLY A 89 SHEET 3 B 4 GLY A 211 SER A 221 1 O ARG A 218 N THR A 99 SHEET 4 B 4 LEU A 224 SER A 225 -1 O LEU A 224 N SER A 221 SHEET 1 C 8 GLY A 148 GLN A 152 0 SHEET 2 C 8 ARG A 165 ASP A 178 -1 O ARG A 165 N GLN A 152 SHEET 3 C 8 LEU A 183 CYS A 190 -1 O VAL A 185 N GLU A 176 SHEET 4 C 8 LYS A 121 LEU A 129 -1 N LYS A 121 O CYS A 190 SHEET 5 C 8 GLY A 211 SER A 221 -1 O HIS A 212 N ARG A 128 SHEET 6 C 8 THR A 99 ILE A 106 1 N THR A 99 O ARG A 218 SHEET 7 C 8 GLY A 60 LYS A 66 -1 N ILE A 62 O VAL A 104 SHEET 8 C 8 GLN A 257 PRO A 258 -1 O GLN A 257 N VAL A 61 SHEET 1 D 3 ARG B 13 THR B 16 0 SHEET 2 D 3 MET B 4 LEU B 7 -1 N THR B 6 O ILE B 14 SHEET 3 D 3 LYS B 28 SER B 29 -1 O LYS B 28 N TYR B 5 SHEET 1 E 7 VAL C 37 CYS C 47 0 SHEET 2 E 7 ASP C 50 SER C 55 -1 O VAL C 52 N LEU C 44 SHEET 3 E 7 PHE C 89 CYS C 94 -1 O PHE C 90 N CYS C 53 SHEET 4 E 7 GLN C 74 LEU C 82 -1 N ASP C 79 O THR C 91 SHEET 5 E 7 PRO C 66 TYR C 68 -1 N ILE C 67 O GLY C 76 SHEET 6 E 7 LYS C 108 ALA C 112 -1 O TYR C 110 N TYR C 68 SHEET 7 E 7 VAL C 37 CYS C 47 -1 N LEU C 38 O ILE C 111 SHEET 1 F 2 ILE C 60 PRO C 61 0 SHEET 2 F 2 LEU C 116 LEU C 117 -1 O LEU C 117 N ILE C 60 CRYST1 54.413 59.386 169.212 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018378 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005910 0.00000