HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 04-OCT-11 3U2O
TITLE DIHYDROOROTATE DEHYDROGENASE (DHODH) CRYSTAL STRUCTURE IN COMPLEX WITH
TITLE 2 SMALL MOLECULE INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: DHODEHASE, DIHYDROOROTATE OXIDASE;
COMPND 5 EC: 1.3.5.2;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: DHODH;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET
KEYWDS DHODH, DEHYDROGENASE, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR E.LOZOYA,V.SEGARRA,M.ERRA,C.WENZKOWSKI,A.JESTEL,S.KRAPP,M.BLAESSE
REVDAT 5 13-SEP-23 3U2O 1 REMARK
REVDAT 4 05-SEP-12 3U2O 1 JRNL
REVDAT 3 13-JUN-12 3U2O 1 JRNL
REVDAT 2 21-DEC-11 3U2O 1 REMARK
REVDAT 1 16-NOV-11 3U2O 0
JRNL AUTH M.ERRA,I.MORENO,J.SANAHUJA,M.ANDRES,R.F.REINOSO,E.LOZOYA,
JRNL AUTH 2 P.PIZCUETA,N.GODESSART,J.C.CASTRO-PALOMINO
JRNL TITL BIARYL ANALOGUES OF TERIFLUNOMIDE AS POTENT DHODH
JRNL TITL 2 INHIBITORS.
JRNL REF BIOORG.MED.CHEM.LETT. V. 21 7268 2011
JRNL REFN ISSN 0960-894X
JRNL PMID 22078215
JRNL DOI 10.1016/J.BMCL.2011.10.052
REMARK 2
REMARK 2 RESOLUTION. 2.18 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.2.0019
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.34
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 31139
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.161
REMARK 3 R VALUE (WORKING SET) : 0.159
REMARK 3 FREE R VALUE : 0.205
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1557
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2132
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87
REMARK 3 BIN R VALUE (WORKING SET) : 0.2130
REMARK 3 BIN FREE R VALUE SET COUNT : 113
REMARK 3 BIN FREE R VALUE : 0.2720
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2793
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 91
REMARK 3 SOLVENT ATOMS : 256
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 26.30
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.92
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.70000
REMARK 3 B22 (A**2) : 0.70000
REMARK 3 B33 (A**2) : -1.05000
REMARK 3 B12 (A**2) : 0.35000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): NULL
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.224
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2992 ; 0.014 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): 2076 ; 0.002 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4055 ; 1.437 ; 2.017
REMARK 3 BOND ANGLES OTHERS (DEGREES): 5042 ; 0.921 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 377 ; 5.914 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;35.465 ;22.891
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 516 ;15.040 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.769 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 447 ; 0.079 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3344 ; 0.006 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 597 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 662 ; 0.209 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2380 ; 0.206 ; 0.200
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1455 ; 0.176 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): 1590 ; 0.088 ; 0.200
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 208 ; 0.202 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.140 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.302 ; 0.200
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.166 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2385 ; 3.104 ; 2.000
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 763 ; 0.745 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2966 ; 3.420 ; 3.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1311 ; 5.651 ; 4.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1087 ; 7.447 ; 6.000
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 3U2O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-11.
REMARK 100 THE DEPOSITION ID IS D_1000068229.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 10-AUG-06
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 4.8
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.90005
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31139
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180
REMARK 200 RESOLUTION RANGE LOW (A) : 48.340
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.14200
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.51600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: PDB ENTRY 1D3G
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 63.95
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PH 4.8, VAPOR
REMARK 280 DIFFUSION, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+1/3
REMARK 290 6555 -X,-X+Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.64333
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.82167
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.82167
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.64333
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 2
REMARK 465 ALA A 3
REMARK 465 TRP A 4
REMARK 465 ARG A 5
REMARK 465 HIS A 6
REMARK 465 LEU A 7
REMARK 465 LYS A 8
REMARK 465 LYS A 9
REMARK 465 ARG A 10
REMARK 465 ALA A 11
REMARK 465 GLN A 12
REMARK 465 ASP A 13
REMARK 465 ALA A 14
REMARK 465 VAL A 15
REMARK 465 ILE A 16
REMARK 465 ILE A 17
REMARK 465 LEU A 18
REMARK 465 GLY A 19
REMARK 465 GLY A 20
REMARK 465 GLY A 21
REMARK 465 GLY A 22
REMARK 465 LEU A 23
REMARK 465 LEU A 24
REMARK 465 PHE A 25
REMARK 465 ALA A 26
REMARK 465 SER A 27
REMARK 465 TYR A 28
REMARK 465 LEU A 29
REMARK 465 ARG A 396
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 610 O HOH A 644 1.94
REMARK 500 NZ LYS A 307 OG SER A 337 2.11
REMARK 500 O HOH A 605 O HOH A 648 2.15
REMARK 500 O HOH A 519 O HOH A 587 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 99 79.41 -106.38
REMARK 500 TYR A 356 -66.81 -142.61
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 500
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORO A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 03U A 1
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 397
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 398
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401
DBREF 3U2O A 2 396 UNP Q02127 PYRD_HUMAN 1 395
SEQRES 1 A 395 MET ALA TRP ARG HIS LEU LYS LYS ARG ALA GLN ASP ALA
SEQRES 2 A 395 VAL ILE ILE LEU GLY GLY GLY GLY LEU LEU PHE ALA SER
SEQRES 3 A 395 TYR LEU MET ALA THR GLY ASP GLU ARG PHE TYR ALA GLU
SEQRES 4 A 395 HIS LEU MET PRO THR LEU GLN GLY LEU LEU ASP PRO GLU
SEQRES 5 A 395 SER ALA HIS ARG LEU ALA VAL ARG PHE THR SER LEU GLY
SEQRES 6 A 395 LEU LEU PRO ARG ALA ARG PHE GLN ASP SER ASP MET LEU
SEQRES 7 A 395 GLU VAL ARG VAL LEU GLY HIS LYS PHE ARG ASN PRO VAL
SEQRES 8 A 395 GLY ILE ALA ALA GLY PHE ASP LYS HIS GLY GLU ALA VAL
SEQRES 9 A 395 ASP GLY LEU TYR LYS MET GLY PHE GLY PHE VAL GLU ILE
SEQRES 10 A 395 GLY SER VAL THR PRO LYS PRO GLN GLU GLY ASN PRO ARG
SEQRES 11 A 395 PRO ARG VAL PHE ARG LEU PRO GLU ASP GLN ALA VAL ILE
SEQRES 12 A 395 ASN ARG TYR GLY PHE ASN SER HIS GLY LEU SER VAL VAL
SEQRES 13 A 395 GLU HIS ARG LEU ARG ALA ARG GLN GLN LYS GLN ALA LYS
SEQRES 14 A 395 LEU THR GLU ASP GLY LEU PRO LEU GLY VAL ASN LEU GLY
SEQRES 15 A 395 LYS ASN LYS THR SER VAL ASP ALA ALA GLU ASP TYR ALA
SEQRES 16 A 395 GLU GLY VAL ARG VAL LEU GLY PRO LEU ALA ASP TYR LEU
SEQRES 17 A 395 VAL VAL ASN VAL SER SER PRO ASN THR ALA GLY LEU ARG
SEQRES 18 A 395 SER LEU GLN GLY LYS ALA GLU LEU ARG ARG LEU LEU THR
SEQRES 19 A 395 LYS VAL LEU GLN GLU ARG ASP GLY LEU ARG ARG VAL HIS
SEQRES 20 A 395 ARG PRO ALA VAL LEU VAL LYS ILE ALA PRO ASP LEU THR
SEQRES 21 A 395 SER GLN ASP LYS GLU ASP ILE ALA SER VAL VAL LYS GLU
SEQRES 22 A 395 LEU GLY ILE ASP GLY LEU ILE VAL THR ASN THR THR VAL
SEQRES 23 A 395 SER ARG PRO ALA GLY LEU GLN GLY ALA LEU ARG SER GLU
SEQRES 24 A 395 THR GLY GLY LEU SER GLY LYS PRO LEU ARG ASP LEU SER
SEQRES 25 A 395 THR GLN THR ILE ARG GLU MET TYR ALA LEU THR GLN GLY
SEQRES 26 A 395 ARG VAL PRO ILE ILE GLY VAL GLY GLY VAL SER SER GLY
SEQRES 27 A 395 GLN ASP ALA LEU GLU LYS ILE ARG ALA GLY ALA SER LEU
SEQRES 28 A 395 VAL GLN LEU TYR THR ALA LEU THR PHE TRP GLY PRO PRO
SEQRES 29 A 395 VAL VAL GLY LYS VAL LYS ARG GLU LEU GLU ALA LEU LEU
SEQRES 30 A 395 LYS GLU GLN GLY PHE GLY GLY VAL THR ASP ALA ILE GLY
SEQRES 31 A 395 ALA ASP HIS ARG ARG
HET FMN A 500 31
HET ORO A 501 11
HET 03U A 1 27
HET ACT A 397 4
HET ACT A 398 4
HET ACT A 399 4
HET SO4 A 400 5
HET SO4 A 401 5
HETNAM FMN FLAVIN MONONUCLEOTIDE
HETNAM ORO OROTIC ACID
HETNAM 03U METHYL 4-{[(2Z)-2-CYANO-3-HYDROXYPENT-2-ENOYL]AMINO}-
HETNAM 2 03U 4'-FLUOROBIPHENYL-2-CARBOXYLATE
HETNAM ACT ACETATE ION
HETNAM SO4 SULFATE ION
HETSYN FMN RIBOFLAVIN MONOPHOSPHATE
FORMUL 2 FMN C17 H21 N4 O9 P
FORMUL 3 ORO C5 H4 N2 O4
FORMUL 4 03U C20 H17 F N2 O4
FORMUL 5 ACT 3(C2 H3 O2 1-)
FORMUL 8 SO4 2(O4 S 2-)
FORMUL 10 HOH *256(H2 O)
HELIX 1 1 MET A 30 HIS A 41 1 12
HELIX 2 2 HIS A 41 LEU A 50 1 10
HELIX 3 3 ASP A 51 LEU A 65 1 15
HELIX 4 4 SER A 76 GLU A 80 5 5
HELIX 5 5 ALA A 104 MET A 111 1 8
HELIX 6 6 PRO A 138 ASP A 140 5 3
HELIX 7 7 HIS A 152 ALA A 163 1 12
HELIX 8 8 ARG A 164 ASP A 174 1 11
HELIX 9 9 ASP A 190 GLY A 203 1 14
HELIX 10 10 PRO A 204 ALA A 206 5 3
HELIX 11 11 GLY A 220 GLN A 225 5 6
HELIX 12 12 GLY A 226 GLY A 243 1 18
HELIX 13 13 ARG A 245 ARG A 249 5 5
HELIX 14 14 THR A 261 GLY A 276 1 16
HELIX 15 15 LEU A 309 THR A 324 1 16
HELIX 16 16 SER A 338 GLY A 349 1 12
HELIX 17 17 THR A 357 GLY A 363 1 7
HELIX 18 18 PRO A 364 GLN A 381 1 18
HELIX 19 19 GLY A 385 ILE A 390 1 6
HELIX 20 20 GLY A 391 ARG A 395 5 5
SHEET 1 A 2 VAL A 81 VAL A 83 0
SHEET 2 A 2 HIS A 86 PHE A 88 -1 O PHE A 88 N VAL A 81
SHEET 1 B 9 VAL A 92 ILE A 94 0
SHEET 2 B 9 PHE A 115 VAL A 121 1 O PHE A 115 N ILE A 94
SHEET 3 B 9 LEU A 178 LEU A 182 1 O GLY A 179 N VAL A 116
SHEET 4 B 9 TYR A 208 ASN A 212 1 O VAL A 210 N LEU A 182
SHEET 5 B 9 ALA A 251 ILE A 256 1 O LEU A 253 N LEU A 209
SHEET 6 B 9 GLY A 279 VAL A 282 1 O ILE A 281 N VAL A 254
SHEET 7 B 9 ILE A 330 VAL A 333 1 O ILE A 331 N VAL A 282
SHEET 8 B 9 LEU A 352 LEU A 355 1 O LEU A 352 N GLY A 332
SHEET 9 B 9 VAL A 92 ILE A 94 1 N GLY A 93 O VAL A 353
SHEET 1 C 3 VAL A 134 LEU A 137 0
SHEET 2 C 3 ALA A 142 ASN A 145 -1 O ILE A 144 N PHE A 135
SHEET 3 C 3 GLY A 303 GLY A 306 -1 O SER A 305 N VAL A 143
CISPEP 1 GLY A 119 SER A 120 0 7.50
CISPEP 2 ARG A 131 PRO A 132 0 0.09
CISPEP 3 VAL A 282 THR A 283 0 8.42
SITE 1 AC1 26 ALA A 95 ALA A 96 GLY A 97 LYS A 100
SITE 2 AC1 26 GLY A 119 SER A 120 ASN A 145 TYR A 147
SITE 3 AC1 26 ASN A 181 ASN A 212 LYS A 255 THR A 283
SITE 4 AC1 26 ASN A 284 THR A 285 SER A 305 GLY A 306
SITE 5 AC1 26 LEU A 309 VAL A 333 GLY A 334 GLY A 335
SITE 6 AC1 26 LEU A 355 TYR A 356 THR A 357 HOH A 402
SITE 7 AC1 26 ORO A 501 HOH A 512
SITE 1 AC2 11 LYS A 100 ASN A 145 TYR A 147 GLY A 148
SITE 2 AC2 11 PHE A 149 ASN A 212 SER A 215 ASN A 217
SITE 3 AC2 11 ASN A 284 THR A 285 FMN A 500
SITE 1 AC3 14 TYR A 38 MET A 43 LEU A 46 PRO A 52
SITE 2 AC3 14 HIS A 56 ALA A 59 PHE A 62 LEU A 68
SITE 3 AC3 14 PHE A 98 MET A 111 ARG A 136 TYR A 356
SITE 4 AC3 14 THR A 360 PRO A 364
SITE 1 AC4 8 LYS A 307 PRO A 308 ASP A 311 THR A 314
SITE 2 AC4 8 GLN A 315 ARG A 318 HOH A 410 HOH A 420
SITE 1 AC5 6 LYS A 100 HIS A 101 TYR A 147 ASN A 150
SITE 2 AC5 6 HOH A 434 HOH A 611
SITE 1 AC6 3 GLY A 220 ARG A 222 HOH A 594
SITE 1 AC7 4 ARG A 245 VAL A 247 HIS A 248 HOH A 566
CRYST1 91.028 91.028 122.465 90.00 90.00 120.00 P 32 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010986 0.006343 0.000000 0.00000
SCALE2 0.000000 0.012685 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008166 0.00000