data_3U2Q # _entry.id 3U2Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3U2Q pdb_00003u2q 10.2210/pdb3u2q/pdb RCSB RCSB068231 ? ? WWPDB D_1000068231 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3U6K 'Ef-tu (escherichia coli) in complex with nvp-ldk733' unspecified PDB 3U6B 'Ef-tu (escherichia coli) in complex with nvp-ldi028' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3U2Q _pdbx_database_status.recvd_initial_deposition_date 2011-10-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Palestrant, D.J.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Discovery of LFF571: an investigational agent for Clostridium difficile infection.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 55 _citation.page_first 2376 _citation.page_last 2387 _citation.year 2012 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22315981 _citation.pdbx_database_id_DOI 10.1021/jm201685h # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'LaMarche, M.J.' 1 ? primary 'Leeds, J.A.' 2 ? primary 'Amaral, A.' 3 ? primary 'Brewer, J.T.' 4 ? primary 'Bushell, S.M.' 5 ? primary 'Deng, G.' 6 ? primary 'Dewhurst, J.M.' 7 ? primary 'Ding, J.' 8 ? primary 'Dzink-Fox, J.' 9 ? primary 'Gamber, G.' 10 ? primary 'Jain, A.' 11 ? primary 'Lee, K.' 12 ? primary 'Lee, L.' 13 ? primary 'Lister, T.' 14 ? primary 'McKenney, D.' 15 ? primary 'Mullin, S.' 16 ? primary 'Osborne, C.' 17 ? primary 'Palestrant, D.' 18 ? primary 'Patane, M.A.' 19 ? primary 'Rann, E.M.' 20 ? primary 'Sachdeva, M.' 21 ? primary 'Shao, J.' 22 ? primary 'Tiamfook, S.' 23 ? primary 'Trzasko, A.' 24 ? primary 'Whitehead, L.' 25 ? primary 'Yifru, A.' 26 ? primary 'Yu, D.' 27 ? primary 'Yan, W.' 28 ? primary 'Zhu, Q.' 29 ? # _cell.entry_id 3U2Q _cell.length_a 83.303 _cell.length_b 132.473 _cell.length_c 37.433 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U2Q _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Elongation factor Tu 1' 43324.465 1 ? ? ? ? 2 polymer syn 'Thiocillin GE2270 analogue NVP-LFF571' 1543.765 1 ? ? ? ? 3 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 89 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'EF-Tu 1, P-43' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHV DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVG EEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRH TPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG ; ;MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHV DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVG EEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRH TPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG ; A ? 2 'polypeptide(L)' no yes 'S(BB9)(MEN)(BB6)V(BB7)G(BB8)(BB9)(BB9)(MH6)(7BB)' SCNCVCGFCCSX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LYS n 1 4 GLU n 1 5 LYS n 1 6 PHE n 1 7 GLU n 1 8 ARG n 1 9 THR n 1 10 LYS n 1 11 PRO n 1 12 HIS n 1 13 VAL n 1 14 ASN n 1 15 VAL n 1 16 GLY n 1 17 THR n 1 18 ILE n 1 19 GLY n 1 20 HIS n 1 21 VAL n 1 22 ASP n 1 23 HIS n 1 24 GLY n 1 25 LYS n 1 26 THR n 1 27 THR n 1 28 LEU n 1 29 THR n 1 30 ALA n 1 31 ALA n 1 32 ILE n 1 33 THR n 1 34 THR n 1 35 VAL n 1 36 LEU n 1 37 ALA n 1 38 LYS n 1 39 THR n 1 40 TYR n 1 41 GLY n 1 42 GLY n 1 43 ALA n 1 44 ALA n 1 45 ARG n 1 46 ALA n 1 47 PHE n 1 48 ASP n 1 49 GLN n 1 50 ILE n 1 51 ASP n 1 52 ASN n 1 53 ALA n 1 54 PRO n 1 55 GLU n 1 56 GLU n 1 57 LYS n 1 58 ALA n 1 59 ARG n 1 60 GLY n 1 61 ILE n 1 62 THR n 1 63 ILE n 1 64 ASN n 1 65 THR n 1 66 SER n 1 67 HIS n 1 68 VAL n 1 69 GLU n 1 70 TYR n 1 71 ASP n 1 72 THR n 1 73 PRO n 1 74 THR n 1 75 ARG n 1 76 HIS n 1 77 TYR n 1 78 ALA n 1 79 HIS n 1 80 VAL n 1 81 ASP n 1 82 CYS n 1 83 PRO n 1 84 GLY n 1 85 HIS n 1 86 ALA n 1 87 ASP n 1 88 TYR n 1 89 VAL n 1 90 LYS n 1 91 ASN n 1 92 MET n 1 93 ILE n 1 94 THR n 1 95 GLY n 1 96 ALA n 1 97 ALA n 1 98 GLN n 1 99 MET n 1 100 ASP n 1 101 GLY n 1 102 ALA n 1 103 ILE n 1 104 LEU n 1 105 VAL n 1 106 VAL n 1 107 ALA n 1 108 ALA n 1 109 THR n 1 110 ASP n 1 111 GLY n 1 112 PRO n 1 113 MET n 1 114 PRO n 1 115 GLN n 1 116 THR n 1 117 ARG n 1 118 GLU n 1 119 HIS n 1 120 ILE n 1 121 LEU n 1 122 LEU n 1 123 GLY n 1 124 ARG n 1 125 GLN n 1 126 VAL n 1 127 GLY n 1 128 VAL n 1 129 PRO n 1 130 TYR n 1 131 ILE n 1 132 ILE n 1 133 VAL n 1 134 PHE n 1 135 LEU n 1 136 ASN n 1 137 LYS n 1 138 CYS n 1 139 ASP n 1 140 MET n 1 141 VAL n 1 142 ASP n 1 143 ASP n 1 144 GLU n 1 145 GLU n 1 146 LEU n 1 147 LEU n 1 148 GLU n 1 149 LEU n 1 150 VAL n 1 151 GLU n 1 152 MET n 1 153 GLU n 1 154 VAL n 1 155 ARG n 1 156 GLU n 1 157 LEU n 1 158 LEU n 1 159 SER n 1 160 GLN n 1 161 TYR n 1 162 ASP n 1 163 PHE n 1 164 PRO n 1 165 GLY n 1 166 ASP n 1 167 ASP n 1 168 THR n 1 169 PRO n 1 170 ILE n 1 171 VAL n 1 172 ARG n 1 173 GLY n 1 174 SER n 1 175 ALA n 1 176 LEU n 1 177 LYS n 1 178 ALA n 1 179 LEU n 1 180 GLU n 1 181 GLY n 1 182 ASP n 1 183 ALA n 1 184 GLU n 1 185 TRP n 1 186 GLU n 1 187 ALA n 1 188 LYS n 1 189 ILE n 1 190 LEU n 1 191 GLU n 1 192 LEU n 1 193 ALA n 1 194 GLY n 1 195 PHE n 1 196 LEU n 1 197 ASP n 1 198 SER n 1 199 TYR n 1 200 ILE n 1 201 PRO n 1 202 GLU n 1 203 PRO n 1 204 GLU n 1 205 ARG n 1 206 ALA n 1 207 ILE n 1 208 ASP n 1 209 LYS n 1 210 PRO n 1 211 PHE n 1 212 LEU n 1 213 LEU n 1 214 PRO n 1 215 ILE n 1 216 GLU n 1 217 ASP n 1 218 VAL n 1 219 PHE n 1 220 SER n 1 221 ILE n 1 222 SER n 1 223 GLY n 1 224 ARG n 1 225 GLY n 1 226 THR n 1 227 VAL n 1 228 VAL n 1 229 THR n 1 230 GLY n 1 231 ARG n 1 232 VAL n 1 233 GLU n 1 234 ARG n 1 235 GLY n 1 236 ILE n 1 237 ILE n 1 238 LYS n 1 239 VAL n 1 240 GLY n 1 241 GLU n 1 242 GLU n 1 243 VAL n 1 244 GLU n 1 245 ILE n 1 246 VAL n 1 247 GLY n 1 248 ILE n 1 249 LYS n 1 250 GLU n 1 251 THR n 1 252 GLN n 1 253 LYS n 1 254 SER n 1 255 THR n 1 256 CYS n 1 257 THR n 1 258 GLY n 1 259 VAL n 1 260 GLU n 1 261 MET n 1 262 PHE n 1 263 ARG n 1 264 LYS n 1 265 LEU n 1 266 LEU n 1 267 ASP n 1 268 GLU n 1 269 GLY n 1 270 ARG n 1 271 ALA n 1 272 GLY n 1 273 GLU n 1 274 ASN n 1 275 VAL n 1 276 GLY n 1 277 VAL n 1 278 LEU n 1 279 LEU n 1 280 ARG n 1 281 GLY n 1 282 ILE n 1 283 LYS n 1 284 ARG n 1 285 GLU n 1 286 GLU n 1 287 ILE n 1 288 GLU n 1 289 ARG n 1 290 GLY n 1 291 GLN n 1 292 VAL n 1 293 LEU n 1 294 ALA n 1 295 LYS n 1 296 PRO n 1 297 GLY n 1 298 THR n 1 299 ILE n 1 300 LYS n 1 301 PRO n 1 302 HIS n 1 303 THR n 1 304 LYS n 1 305 PHE n 1 306 GLU n 1 307 SER n 1 308 GLU n 1 309 VAL n 1 310 TYR n 1 311 ILE n 1 312 LEU n 1 313 SER n 1 314 LYS n 1 315 ASP n 1 316 GLU n 1 317 GLY n 1 318 GLY n 1 319 ARG n 1 320 HIS n 1 321 THR n 1 322 PRO n 1 323 PHE n 1 324 PHE n 1 325 LYS n 1 326 GLY n 1 327 TYR n 1 328 ARG n 1 329 PRO n 1 330 GLN n 1 331 PHE n 1 332 TYR n 1 333 PHE n 1 334 ARG n 1 335 THR n 1 336 THR n 1 337 ASP n 1 338 VAL n 1 339 THR n 1 340 GLY n 1 341 THR n 1 342 ILE n 1 343 GLU n 1 344 LEU n 1 345 PRO n 1 346 GLU n 1 347 GLY n 1 348 VAL n 1 349 GLU n 1 350 MET n 1 351 VAL n 1 352 MET n 1 353 PRO n 1 354 GLY n 1 355 ASP n 1 356 ASN n 1 357 ILE n 1 358 LYS n 1 359 MET n 1 360 VAL n 1 361 VAL n 1 362 THR n 1 363 LEU n 1 364 ILE n 1 365 HIS n 1 366 PRO n 1 367 ILE n 1 368 ALA n 1 369 MET n 1 370 ASP n 1 371 ASP n 1 372 GLY n 1 373 LEU n 1 374 ARG n 1 375 PHE n 1 376 ALA n 1 377 ILE n 1 378 ARG n 1 379 GLU n 1 380 GLY n 1 381 GLY n 1 382 ARG n 1 383 THR n 1 384 VAL n 1 385 GLY n 1 386 ALA n 1 387 GLY n 1 388 VAL n 1 389 VAL n 1 390 ALA n 1 391 LYS n 1 392 VAL n 1 393 LEU n 1 394 GLY n 2 1 SER n 2 2 BB9 n 2 3 MEN n 2 4 BB6 n 2 5 VAL n 2 6 BB7 n 2 7 GLY n 2 8 BB8 n 2 9 BB9 n 2 10 BB9 n 2 11 MH6 n 2 12 7BB n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'tufA, b3339, JW3301' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP EFTU1_ECOLI 1 ;KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDC PGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEE VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTP FFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG ; 3 P0CE47 ? 2 UNP THCL_PLARO 2 SCNCVCGFCCSC 1 Q7M0J8 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3U2Q A 3 ? 394 ? P0CE47 3 ? 394 ? 2 393 2 2 3U2Q B 1 ? 12 ? Q7M0J8 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3U2Q MET A 1 ? UNP P0CE47 ? ? 'expression tag' 0 1 1 3U2Q ALA A 2 ? UNP P0CE47 ? ? 'expression tag' 1 2 2 3U2Q 7BB B 12 ? UNP Q7M0J8 CYS 12 'SEE REMARK 999' 12 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 7BB peptide-like . 'trans-4-({[(E)-1-amino-2-sulfanylethenyl](4-carboxybutyl)carbamoyl}oxy)cyclohexanecarboxylic acid' ? 'C15 H24 N2 O6 S' 360.426 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BB6 'peptide linking' n '(2Z)-2-amino-3-sulfanylbut-2-enoic acid' ? 'C4 H7 N O2 S' 133.169 BB7 'peptide linking' n '(2Z)-2-amino-4-methoxy-3-sulfanylbut-2-enoic acid' ? 'C5 H9 N O3 S' 163.195 BB8 'L-peptide linking' n '(2S,3S)-BETA-HYDROXY-PHENYLALANINE' ;BETA-HYDROXY-PHENYLALANINE; THREO-BETA-HYDROXY-L-PHENYLALANINE; (BETAS)-BETA-HYDROXY-L-PHENYLALANINE; L-THREO-3-PHENYLSERINE; L-THREO-BETA-PHENYLSERINE; 3-HYDROXY-L-PHENYLALANINE ; 'C9 H11 N O3' 181.189 BB9 'peptide linking' n '(2Z)-2-amino-3-sulfanylprop-2-enoic acid' ? 'C3 H5 N O2 S' 119.142 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MEN 'L-peptide linking' n 'N-METHYL ASPARAGINE' ? 'C5 H10 N2 O3' 146.144 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MH6 'peptide linking' n '3-hydroxy-2-iminopropanoic acid' ? 'C3 H5 N O3' 103.077 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3U2Q _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.23 _exptl_crystal_grow.pdbx_details '50mM Tris PH8, 50mM NaCl , pH 8.23, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2008-03-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_wavelength 1.00000 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3U2Q _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.7 _reflns.number_obs 11365 _reflns.number_all ? _reflns.percent_possible_obs 93.5 _reflns.pdbx_Rmerge_I_obs 0.099 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.percent_possible_all 77.2 _reflns_shell.Rmerge_I_obs 0.416 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.79 _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3U2Q _refine.ls_number_reflns_obs 11365 _refine.ls_number_reflns_all 11365 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.02 _refine.ls_d_res_high 2.7 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work .233 _refine.ls_R_factor_R_free .315 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 582 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 1D8T' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model overall _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3058 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 89 _refine_hist.number_atoms_total 3176 _refine_hist.d_res_high 2.7 _refine_hist.d_res_low 39.02 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_angle_deg 1.4 ? ? ? ? 'X-RAY DIFFRACTION' c_bond_d 0.007 ? ? ? ? 'X-RAY DIFFRACTION' # _struct.entry_id 3U2Q _struct.title 'EF-Tu (Escherichia coli) in complex with NVP-LFF571' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U2Q _struct_keywords.pdbx_keywords 'translation factor/antibiotic' _struct_keywords.text 'translation factor-antibiotic complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 24 ? GLY A 41 ? GLY A 23 GLY A 40 1 ? 18 HELX_P HELX_P2 2 ALA A 46 ? ILE A 50 ? ALA A 45 ILE A 49 5 ? 5 HELX_P HELX_P3 3 GLY A 84 ? GLY A 95 ? GLY A 83 GLY A 94 1 ? 12 HELX_P HELX_P4 4 MET A 113 ? GLY A 127 ? MET A 112 GLY A 126 1 ? 15 HELX_P HELX_P5 5 GLU A 148 ? TYR A 161 ? GLU A 147 TYR A 160 1 ? 14 HELX_P HELX_P6 6 LEU A 176 ? GLY A 181 ? LEU A 175 GLY A 180 1 ? 6 HELX_P HELX_P7 7 ASP A 182 ? ILE A 200 ? ASP A 181 ILE A 199 1 ? 19 HELX_P HELX_P8 8 ARG A 205 ? LYS A 209 ? ARG A 204 LYS A 208 5 ? 5 HELX_P HELX_P9 9 LYS A 283 ? ILE A 287 ? LYS A 282 ILE A 286 5 ? 5 HELX_P HELX_P10 10 SER A 313 ? GLY A 317 ? SER A 312 GLY A 316 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B SER 1 C ? ? ? 1_555 B BB9 2 N ? ? B SER 1 B BB9 2 1_555 ? ? ? ? ? ? ? 1.334 sing ? covale2 covale one ? B SER 1 C ? ? ? 1_555 B BB9 2 SG ? ? B SER 1 B BB9 2 1_555 ? ? ? ? ? ? ? 1.717 sing ? covale3 covale one ? B SER 1 CA ? ? ? 1_555 B BB9 10 C ? ? B SER 1 B BB9 10 1_555 ? ? ? ? ? ? ? 1.444 sing ? covale4 covale one ? B SER 1 CB ? ? ? 1_555 B MH6 11 CB ? ? B SER 1 B MH6 11 1_555 ? ? ? ? ? ? ? 1.433 sing ? covale5 covale both ? B BB9 2 C ? ? ? 1_555 B MEN 3 N ? ? B BB9 2 B MEN 3 1_555 ? ? ? ? ? ? ? 1.324 sing ? covale6 covale both ? B MEN 3 C ? ? ? 1_555 B BB6 4 SG ? ? B MEN 3 B BB6 4 1_555 ? ? ? ? ? ? ? 1.742 sing ? covale7 covale both ? B MEN 3 C ? ? ? 1_555 B BB6 4 N ? ? B MEN 3 B BB6 4 1_555 ? ? ? ? ? ? ? 1.342 sing ? covale8 covale both ? B BB6 4 C ? ? ? 1_555 B VAL 5 N ? ? B BB6 4 B VAL 5 1_555 ? ? ? ? ? ? ? 1.379 sing ? covale9 covale both ? B VAL 5 C ? ? ? 1_555 B BB7 6 SG ? ? B VAL 5 B BB7 6 1_555 ? ? ? ? ? ? ? 1.786 sing ? covale10 covale both ? B VAL 5 C ? ? ? 1_555 B BB7 6 N ? ? B VAL 5 B BB7 6 1_555 ? ? ? ? ? ? ? 1.329 sing ? covale11 covale both ? B BB7 6 C ? ? ? 1_555 B GLY 7 N ? ? B BB7 6 B GLY 7 1_555 ? ? ? ? ? ? ? 1.335 sing ? covale12 covale both ? B GLY 7 C ? ? ? 1_555 B BB8 8 N ? ? B GLY 7 B BB8 8 1_555 ? ? ? ? ? ? ? 1.303 sing ? covale13 covale both ? B BB8 8 C ? ? ? 1_555 B BB9 9 N ? ? B BB8 8 B BB9 9 1_555 ? ? ? ? ? ? ? 1.307 sing ? covale14 covale one ? B BB8 8 C ? ? ? 1_555 B BB9 9 SG ? ? B BB8 8 B BB9 9 1_555 ? ? ? ? ? ? ? 1.781 sing ? covale15 covale both ? B BB9 9 C ? ? ? 1_555 B BB9 10 N ? ? B BB9 9 B BB9 10 1_555 ? ? ? ? ? ? ? 1.322 sing ? covale16 covale one ? B BB9 9 C ? ? ? 1_555 B BB9 10 SG ? ? B BB9 9 B BB9 10 1_555 ? ? ? ? ? ? ? 1.738 sing ? covale17 covale both ? B BB9 10 C ? ? ? 1_555 B MH6 11 N ? ? B BB9 10 B MH6 11 1_555 ? ? ? ? ? ? ? 1.327 sing ? covale18 covale both ? B MH6 11 C ? ? ? 1_555 B 7BB 12 SG ? ? B MH6 11 B 7BB 12 1_555 ? ? ? ? ? ? ? 1.755 sing ? covale19 covale both ? B MH6 11 C ? ? ? 1_555 B 7BB 12 N ? ? B MH6 11 B 7BB 12 1_555 ? ? ? ? ? ? ? 1.310 sing ? metalc1 metalc ? ? A THR 26 OG1 ? ? ? 1_555 D MG . MG ? ? A THR 25 A MG 503 1_555 ? ? ? ? ? ? ? 2.490 ? ? metalc2 metalc ? ? E HOH . O ? ? ? 1_555 D MG . MG ? ? A HOH 405 A MG 503 1_555 ? ? ? ? ? ? ? 2.569 ? ? metalc3 metalc ? ? E HOH . O ? ? ? 1_555 D MG . MG ? ? A HOH 433 A MG 503 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc4 metalc ? ? C GDP . O2B ? ? ? 1_555 D MG . MG ? ? A GDP 501 A MG 503 1_555 ? ? ? ? ? ? ? 2.507 ? ? metalc5 metalc ? ? C GDP . O2A ? ? ? 1_555 D MG . MG ? ? A GDP 501 A MG 503 1_555 ? ? ? ? ? ? ? 2.712 ? ? metalc6 metalc ? ? C GDP . O1B ? ? ? 1_555 D MG . MG ? ? A GDP 501 A MG 503 1_555 ? ? ? ? ? ? ? 2.719 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 7 ? C ? 5 ? D ? 2 ? E ? 7 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel E 6 7 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 66 ? THR A 72 ? SER A 65 THR A 71 A 2 ARG A 75 ? ASP A 81 ? ARG A 74 ASP A 80 A 3 HIS A 12 ? ILE A 18 ? HIS A 11 ILE A 17 A 4 ALA A 102 ? ALA A 107 ? ALA A 101 ALA A 106 A 5 ILE A 131 ? ASN A 136 ? ILE A 130 ASN A 135 A 6 ILE A 170 ? ARG A 172 ? ILE A 169 ARG A 171 B 1 LEU A 212 ? PRO A 214 ? LEU A 211 PRO A 213 B 2 VAL A 292 ? ALA A 294 ? VAL A 291 ALA A 293 B 3 GLU A 242 ? VAL A 246 ? GLU A 241 VAL A 245 B 4 GLN A 252 ? MET A 261 ? GLN A 251 MET A 260 B 5 ASN A 274 ? ARG A 280 ? ASN A 273 ARG A 279 B 6 GLY A 225 ? ARG A 231 ? GLY A 224 ARG A 230 B 7 VAL A 218 ? ILE A 221 ? VAL A 217 ILE A 220 C 1 LEU A 212 ? PRO A 214 ? LEU A 211 PRO A 213 C 2 VAL A 292 ? ALA A 294 ? VAL A 291 ALA A 293 C 3 GLU A 242 ? VAL A 246 ? GLU A 241 VAL A 245 C 4 GLN A 252 ? MET A 261 ? GLN A 251 MET A 260 C 5 LYS A 264 ? LEU A 266 ? LYS A 263 LEU A 265 D 1 ILE A 236 ? LYS A 238 ? ILE A 235 LYS A 237 D 2 GLU A 268 ? ARG A 270 ? GLU A 267 ARG A 269 E 1 LYS A 300 ? ILE A 311 ? LYS A 299 ILE A 310 E 2 ASN A 356 ? MET A 369 ? ASN A 355 MET A 368 E 3 THR A 336 ? GLU A 343 ? THR A 335 GLU A 342 E 4 GLN A 330 ? PHE A 333 ? GLN A 329 PHE A 332 E 5 ARG A 374 ? GLU A 379 ? ARG A 373 GLU A 378 E 6 ARG A 382 ? VAL A 392 ? ARG A 381 VAL A 391 E 7 LYS A 300 ? ILE A 311 ? LYS A 299 ILE A 310 F 1 PHE A 323 ? PHE A 324 ? PHE A 322 PHE A 323 F 2 MET A 350 ? VAL A 351 ? MET A 349 VAL A 350 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 70 ? N TYR A 69 O TYR A 77 ? O TYR A 76 A 2 3 O ALA A 78 ? O ALA A 77 N VAL A 15 ? N VAL A 14 A 3 4 N ILE A 18 ? N ILE A 17 O VAL A 105 ? O VAL A 104 A 4 5 N ALA A 102 ? N ALA A 101 O ILE A 132 ? O ILE A 131 A 5 6 N VAL A 133 ? N VAL A 132 O VAL A 171 ? O VAL A 170 B 1 2 N LEU A 213 ? N LEU A 212 O LEU A 293 ? O LEU A 292 B 2 3 O ALA A 294 ? O ALA A 293 N GLU A 244 ? N GLU A 243 B 3 4 N VAL A 243 ? N VAL A 242 O SER A 254 ? O SER A 253 B 4 5 N THR A 257 ? N THR A 256 O LEU A 278 ? O LEU A 277 B 5 6 O LEU A 279 ? O LEU A 278 N THR A 226 ? N THR A 225 B 6 7 O GLY A 225 ? O GLY A 224 N ILE A 221 ? N ILE A 220 C 1 2 N LEU A 213 ? N LEU A 212 O LEU A 293 ? O LEU A 292 C 2 3 O ALA A 294 ? O ALA A 293 N GLU A 244 ? N GLU A 243 C 3 4 N VAL A 243 ? N VAL A 242 O SER A 254 ? O SER A 253 C 4 5 N VAL A 259 ? N VAL A 258 O LEU A 266 ? O LEU A 265 D 1 2 N ILE A 237 ? N ILE A 236 O GLY A 269 ? O GLY A 268 E 1 2 N SER A 307 ? N SER A 306 O MET A 359 ? O MET A 358 E 2 3 O ILE A 364 ? O ILE A 363 N THR A 339 ? N THR A 338 E 3 4 O VAL A 338 ? O VAL A 337 N PHE A 331 ? N PHE A 330 E 4 5 N TYR A 332 ? N TYR A 331 O ALA A 376 ? O ALA A 375 E 5 6 N ILE A 377 ? N ILE A 376 O GLY A 385 ? O GLY A 384 E 6 7 O ALA A 386 ? O ALA A 385 N TYR A 310 ? N TYR A 309 F 1 2 N PHE A 323 ? N PHE A 322 O VAL A 351 ? O VAL A 350 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GDP 501 ? 18 'BINDING SITE FOR RESIDUE GDP A 501' AC2 Software A MG 503 ? 5 'BINDING SITE FOR RESIDUE MG A 503' AC3 Software ? ? ? ? 25 'BINDING SITE FOR CHAIN B OF NVP-LFF571' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 HIS A 20 ? HIS A 19 . ? 1_555 ? 2 AC1 18 VAL A 21 ? VAL A 20 . ? 1_555 ? 3 AC1 18 ASP A 22 ? ASP A 21 . ? 1_555 ? 4 AC1 18 HIS A 23 ? HIS A 22 . ? 1_555 ? 5 AC1 18 GLY A 24 ? GLY A 23 . ? 1_555 ? 6 AC1 18 LYS A 25 ? LYS A 24 . ? 1_555 ? 7 AC1 18 THR A 26 ? THR A 25 . ? 1_555 ? 8 AC1 18 THR A 27 ? THR A 26 . ? 1_555 ? 9 AC1 18 PHE A 47 ? PHE A 46 . ? 1_555 ? 10 AC1 18 ASP A 51 ? ASP A 50 . ? 1_555 ? 11 AC1 18 ASN A 136 ? ASN A 135 . ? 1_555 ? 12 AC1 18 LYS A 137 ? LYS A 136 . ? 1_555 ? 13 AC1 18 ASP A 139 ? ASP A 138 . ? 1_555 ? 14 AC1 18 MET A 140 ? MET A 139 . ? 1_555 ? 15 AC1 18 SER A 174 ? SER A 173 . ? 1_555 ? 16 AC1 18 LEU A 176 ? LEU A 175 . ? 1_555 ? 17 AC1 18 HOH E . ? HOH A 433 . ? 1_555 ? 18 AC1 18 MG D . ? MG A 503 . ? 1_555 ? 19 AC2 5 THR A 26 ? THR A 25 . ? 1_555 ? 20 AC2 5 ASP A 51 ? ASP A 50 . ? 1_555 ? 21 AC2 5 HOH E . ? HOH A 405 . ? 1_555 ? 22 AC2 5 HOH E . ? HOH A 433 . ? 1_555 ? 23 AC2 5 GDP C . ? GDP A 501 . ? 1_555 ? 24 AC3 25 THR A 39 ? THR A 38 . ? 2_655 ? 25 AC3 25 TYR A 40 ? TYR A 39 . ? 2_655 ? 26 AC3 25 PRO A 73 ? PRO A 72 . ? 2_655 ? 27 AC3 25 GLU A 216 ? GLU A 215 . ? 1_555 ? 28 AC3 25 ASP A 217 ? ASP A 216 . ? 1_555 ? 29 AC3 25 PHE A 219 ? PHE A 218 . ? 1_555 ? 30 AC3 25 THR A 229 ? THR A 228 . ? 1_555 ? 31 AC3 25 THR A 257 ? THR A 256 . ? 1_555 ? 32 AC3 25 GLY A 258 ? GLY A 257 . ? 1_555 ? 33 AC3 25 GLU A 260 ? GLU A 259 . ? 1_555 ? 34 AC3 25 PHE A 262 ? PHE A 261 . ? 1_555 ? 35 AC3 25 ARG A 263 ? ARG A 262 . ? 1_555 ? 36 AC3 25 ASN A 274 ? ASN A 273 . ? 1_555 ? 37 AC3 25 VAL A 275 ? VAL A 274 . ? 1_555 ? 38 AC3 25 GLY A 276 ? GLY A 275 . ? 1_555 ? 39 AC3 25 LEU A 278 ? LEU A 277 . ? 1_555 ? 40 AC3 25 LYS A 304 ? LYS A 303 . ? 4_545 ? 41 AC3 25 HIS A 320 ? HIS A 319 . ? 4_544 ? 42 AC3 25 THR A 321 ? THR A 320 . ? 4_544 ? 43 AC3 25 PRO A 322 ? PRO A 321 . ? 4_544 ? 44 AC3 25 PHE A 324 ? PHE A 323 . ? 4_544 ? 45 AC3 25 HOH E . ? HOH A 407 . ? 1_555 ? 46 AC3 25 HOH F . ? HOH B 13 . ? 1_555 ? 47 AC3 25 HOH F . ? HOH B 18 . ? 1_555 ? 48 AC3 25 HOH F . ? HOH B 87 . ? 1_555 ? # _database_PDB_matrix.entry_id 3U2Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3U2Q _atom_sites.fract_transf_matrix[1][1] 0.012004 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007549 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026714 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 ALA 2 1 ? ? ? A . n A 1 3 LYS 3 2 ? ? ? A . n A 1 4 GLU 4 3 ? ? ? A . n A 1 5 LYS 5 4 ? ? ? A . n A 1 6 PHE 6 5 ? ? ? A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 ARG 8 7 7 ARG ARG A . n A 1 9 THR 9 8 8 THR THR A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 PRO 11 10 10 PRO PRO A . n A 1 12 HIS 12 11 11 HIS HIS A . n A 1 13 VAL 13 12 12 VAL VAL A . n A 1 14 ASN 14 13 13 ASN ASN A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 THR 17 16 16 THR THR A . n A 1 18 ILE 18 17 17 ILE ILE A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 HIS 20 19 19 HIS HIS A . n A 1 21 VAL 21 20 20 VAL VAL A . n A 1 22 ASP 22 21 21 ASP ASP A . n A 1 23 HIS 23 22 22 HIS HIS A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 LYS 25 24 24 LYS LYS A . n A 1 26 THR 26 25 25 THR THR A . n A 1 27 THR 27 26 26 THR THR A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 THR 29 28 28 THR THR A . n A 1 30 ALA 30 29 29 ALA ALA A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 THR 33 32 32 THR THR A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 VAL 35 34 34 VAL VAL A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 LYS 38 37 37 LYS LYS A . n A 1 39 THR 39 38 38 THR THR A . n A 1 40 TYR 40 39 39 TYR TYR A . n A 1 41 GLY 41 40 40 GLY GLY A . n A 1 42 GLY 42 41 41 GLY GLY A . n A 1 43 ALA 43 42 42 ALA ALA A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 ARG 45 44 44 ARG ARG A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 PHE 47 46 46 PHE PHE A . n A 1 48 ASP 48 47 47 ASP ASP A . n A 1 49 GLN 49 48 48 GLN GLN A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 ASP 51 50 50 ASP ASP A . n A 1 52 ASN 52 51 51 ASN ASN A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 PRO 54 53 53 PRO PRO A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 GLU 56 55 55 GLU GLU A . n A 1 57 LYS 57 56 56 LYS LYS A . n A 1 58 ALA 58 57 57 ALA ALA A . n A 1 59 ARG 59 58 ? ? ? A . n A 1 60 GLY 60 59 ? ? ? A . n A 1 61 ILE 61 60 ? ? ? A . n A 1 62 THR 62 61 61 THR THR A . n A 1 63 ILE 63 62 62 ILE ILE A . n A 1 64 ASN 64 63 63 ASN ASN A . n A 1 65 THR 65 64 64 THR THR A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 HIS 67 66 66 HIS HIS A . n A 1 68 VAL 68 67 67 VAL VAL A . n A 1 69 GLU 69 68 68 GLU GLU A . n A 1 70 TYR 70 69 69 TYR TYR A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 THR 72 71 71 THR THR A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 ARG 75 74 74 ARG ARG A . n A 1 76 HIS 76 75 75 HIS HIS A . n A 1 77 TYR 77 76 76 TYR TYR A . n A 1 78 ALA 78 77 77 ALA ALA A . n A 1 79 HIS 79 78 78 HIS HIS A . n A 1 80 VAL 80 79 79 VAL VAL A . n A 1 81 ASP 81 80 80 ASP ASP A . n A 1 82 CYS 82 81 81 CYS CYS A . n A 1 83 PRO 83 82 82 PRO PRO A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 HIS 85 84 84 HIS HIS A . n A 1 86 ALA 86 85 85 ALA ALA A . n A 1 87 ASP 87 86 86 ASP ASP A . n A 1 88 TYR 88 87 87 TYR TYR A . n A 1 89 VAL 89 88 88 VAL VAL A . n A 1 90 LYS 90 89 89 LYS LYS A . n A 1 91 ASN 91 90 90 ASN ASN A . n A 1 92 MET 92 91 91 MET MET A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 THR 94 93 93 THR THR A . n A 1 95 GLY 95 94 94 GLY GLY A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 ALA 97 96 96 ALA ALA A . n A 1 98 GLN 98 97 97 GLN GLN A . n A 1 99 MET 99 98 98 MET MET A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 ALA 102 101 101 ALA ALA A . n A 1 103 ILE 103 102 102 ILE ILE A . n A 1 104 LEU 104 103 103 LEU LEU A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 VAL 106 105 105 VAL VAL A . n A 1 107 ALA 107 106 106 ALA ALA A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 THR 109 108 108 THR THR A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 GLY 111 110 110 GLY GLY A . n A 1 112 PRO 112 111 111 PRO PRO A . n A 1 113 MET 113 112 112 MET MET A . n A 1 114 PRO 114 113 113 PRO PRO A . n A 1 115 GLN 115 114 114 GLN GLN A . n A 1 116 THR 116 115 115 THR THR A . n A 1 117 ARG 117 116 116 ARG ARG A . n A 1 118 GLU 118 117 117 GLU GLU A . n A 1 119 HIS 119 118 118 HIS HIS A . n A 1 120 ILE 120 119 119 ILE ILE A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 GLY 123 122 122 GLY GLY A . n A 1 124 ARG 124 123 123 ARG ARG A . n A 1 125 GLN 125 124 124 GLN GLN A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 GLY 127 126 126 GLY GLY A . n A 1 128 VAL 128 127 127 VAL VAL A . n A 1 129 PRO 129 128 128 PRO PRO A . n A 1 130 TYR 130 129 129 TYR TYR A . n A 1 131 ILE 131 130 130 ILE ILE A . n A 1 132 ILE 132 131 131 ILE ILE A . n A 1 133 VAL 133 132 132 VAL VAL A . n A 1 134 PHE 134 133 133 PHE PHE A . n A 1 135 LEU 135 134 134 LEU LEU A . n A 1 136 ASN 136 135 135 ASN ASN A . n A 1 137 LYS 137 136 136 LYS LYS A . n A 1 138 CYS 138 137 137 CYS CYS A . n A 1 139 ASP 139 138 138 ASP ASP A . n A 1 140 MET 140 139 139 MET MET A . n A 1 141 VAL 141 140 140 VAL VAL A . n A 1 142 ASP 142 141 141 ASP ASP A . n A 1 143 ASP 143 142 142 ASP ASP A . n A 1 144 GLU 144 143 143 GLU GLU A . n A 1 145 GLU 145 144 144 GLU GLU A . n A 1 146 LEU 146 145 145 LEU LEU A . n A 1 147 LEU 147 146 146 LEU LEU A . n A 1 148 GLU 148 147 147 GLU GLU A . n A 1 149 LEU 149 148 148 LEU LEU A . n A 1 150 VAL 150 149 149 VAL VAL A . n A 1 151 GLU 151 150 150 GLU GLU A . n A 1 152 MET 152 151 151 MET MET A . n A 1 153 GLU 153 152 152 GLU GLU A . n A 1 154 VAL 154 153 153 VAL VAL A . n A 1 155 ARG 155 154 154 ARG ARG A . n A 1 156 GLU 156 155 155 GLU GLU A . n A 1 157 LEU 157 156 156 LEU LEU A . n A 1 158 LEU 158 157 157 LEU LEU A . n A 1 159 SER 159 158 158 SER SER A . n A 1 160 GLN 160 159 159 GLN GLN A . n A 1 161 TYR 161 160 160 TYR TYR A . n A 1 162 ASP 162 161 161 ASP ASP A . n A 1 163 PHE 163 162 162 PHE PHE A . n A 1 164 PRO 164 163 163 PRO PRO A . n A 1 165 GLY 165 164 164 GLY GLY A . n A 1 166 ASP 166 165 165 ASP ASP A . n A 1 167 ASP 167 166 166 ASP ASP A . n A 1 168 THR 168 167 167 THR THR A . n A 1 169 PRO 169 168 168 PRO PRO A . n A 1 170 ILE 170 169 169 ILE ILE A . n A 1 171 VAL 171 170 170 VAL VAL A . n A 1 172 ARG 172 171 171 ARG ARG A . n A 1 173 GLY 173 172 172 GLY GLY A . n A 1 174 SER 174 173 173 SER SER A . n A 1 175 ALA 175 174 174 ALA ALA A . n A 1 176 LEU 176 175 175 LEU LEU A . n A 1 177 LYS 177 176 176 LYS LYS A . n A 1 178 ALA 178 177 177 ALA ALA A . n A 1 179 LEU 179 178 178 LEU LEU A . n A 1 180 GLU 180 179 179 GLU GLU A . n A 1 181 GLY 181 180 180 GLY GLY A . n A 1 182 ASP 182 181 181 ASP ASP A . n A 1 183 ALA 183 182 182 ALA ALA A . n A 1 184 GLU 184 183 183 GLU GLU A . n A 1 185 TRP 185 184 184 TRP TRP A . n A 1 186 GLU 186 185 185 GLU GLU A . n A 1 187 ALA 187 186 186 ALA ALA A . n A 1 188 LYS 188 187 187 LYS LYS A . n A 1 189 ILE 189 188 188 ILE ILE A . n A 1 190 LEU 190 189 189 LEU LEU A . n A 1 191 GLU 191 190 190 GLU GLU A . n A 1 192 LEU 192 191 191 LEU LEU A . n A 1 193 ALA 193 192 192 ALA ALA A . n A 1 194 GLY 194 193 193 GLY GLY A . n A 1 195 PHE 195 194 194 PHE PHE A . n A 1 196 LEU 196 195 195 LEU LEU A . n A 1 197 ASP 197 196 196 ASP ASP A . n A 1 198 SER 198 197 197 SER SER A . n A 1 199 TYR 199 198 198 TYR TYR A . n A 1 200 ILE 200 199 199 ILE ILE A . n A 1 201 PRO 201 200 200 PRO PRO A . n A 1 202 GLU 202 201 201 GLU GLU A . n A 1 203 PRO 203 202 202 PRO PRO A . n A 1 204 GLU 204 203 203 GLU GLU A . n A 1 205 ARG 205 204 204 ARG ARG A . n A 1 206 ALA 206 205 205 ALA ALA A . n A 1 207 ILE 207 206 206 ILE ILE A . n A 1 208 ASP 208 207 207 ASP ASP A . n A 1 209 LYS 209 208 208 LYS LYS A . n A 1 210 PRO 210 209 209 PRO PRO A . n A 1 211 PHE 211 210 210 PHE PHE A . n A 1 212 LEU 212 211 211 LEU LEU A . n A 1 213 LEU 213 212 212 LEU LEU A . n A 1 214 PRO 214 213 213 PRO PRO A . n A 1 215 ILE 215 214 214 ILE ILE A . n A 1 216 GLU 216 215 215 GLU GLU A . n A 1 217 ASP 217 216 216 ASP ASP A . n A 1 218 VAL 218 217 217 VAL VAL A . n A 1 219 PHE 219 218 218 PHE PHE A . n A 1 220 SER 220 219 219 SER SER A . n A 1 221 ILE 221 220 220 ILE ILE A . n A 1 222 SER 222 221 221 SER SER A . n A 1 223 GLY 223 222 222 GLY GLY A . n A 1 224 ARG 224 223 223 ARG ARG A . n A 1 225 GLY 225 224 224 GLY GLY A . n A 1 226 THR 226 225 225 THR THR A . n A 1 227 VAL 227 226 226 VAL VAL A . n A 1 228 VAL 228 227 227 VAL VAL A . n A 1 229 THR 229 228 228 THR THR A . n A 1 230 GLY 230 229 229 GLY GLY A . n A 1 231 ARG 231 230 230 ARG ARG A . n A 1 232 VAL 232 231 231 VAL VAL A . n A 1 233 GLU 233 232 232 GLU GLU A . n A 1 234 ARG 234 233 233 ARG ARG A . n A 1 235 GLY 235 234 234 GLY GLY A . n A 1 236 ILE 236 235 235 ILE ILE A . n A 1 237 ILE 237 236 236 ILE ILE A . n A 1 238 LYS 238 237 237 LYS LYS A . n A 1 239 VAL 239 238 238 VAL VAL A . n A 1 240 GLY 240 239 239 GLY GLY A . n A 1 241 GLU 241 240 240 GLU GLU A . n A 1 242 GLU 242 241 241 GLU GLU A . n A 1 243 VAL 243 242 242 VAL VAL A . n A 1 244 GLU 244 243 243 GLU GLU A . n A 1 245 ILE 245 244 244 ILE ILE A . n A 1 246 VAL 246 245 245 VAL VAL A . n A 1 247 GLY 247 246 246 GLY GLY A . n A 1 248 ILE 248 247 247 ILE ILE A . n A 1 249 LYS 249 248 248 LYS LYS A . n A 1 250 GLU 250 249 249 GLU GLU A . n A 1 251 THR 251 250 250 THR THR A . n A 1 252 GLN 252 251 251 GLN GLN A . n A 1 253 LYS 253 252 252 LYS LYS A . n A 1 254 SER 254 253 253 SER SER A . n A 1 255 THR 255 254 254 THR THR A . n A 1 256 CYS 256 255 255 CYS CYS A . n A 1 257 THR 257 256 256 THR THR A . n A 1 258 GLY 258 257 257 GLY GLY A . n A 1 259 VAL 259 258 258 VAL VAL A . n A 1 260 GLU 260 259 259 GLU GLU A . n A 1 261 MET 261 260 260 MET MET A . n A 1 262 PHE 262 261 261 PHE PHE A . n A 1 263 ARG 263 262 262 ARG ARG A . n A 1 264 LYS 264 263 263 LYS LYS A . n A 1 265 LEU 265 264 264 LEU LEU A . n A 1 266 LEU 266 265 265 LEU LEU A . n A 1 267 ASP 267 266 266 ASP ASP A . n A 1 268 GLU 268 267 267 GLU GLU A . n A 1 269 GLY 269 268 268 GLY GLY A . n A 1 270 ARG 270 269 269 ARG ARG A . n A 1 271 ALA 271 270 270 ALA ALA A . n A 1 272 GLY 272 271 271 GLY GLY A . n A 1 273 GLU 273 272 272 GLU GLU A . n A 1 274 ASN 274 273 273 ASN ASN A . n A 1 275 VAL 275 274 274 VAL VAL A . n A 1 276 GLY 276 275 275 GLY GLY A . n A 1 277 VAL 277 276 276 VAL VAL A . n A 1 278 LEU 278 277 277 LEU LEU A . n A 1 279 LEU 279 278 278 LEU LEU A . n A 1 280 ARG 280 279 279 ARG ARG A . n A 1 281 GLY 281 280 280 GLY GLY A . n A 1 282 ILE 282 281 281 ILE ILE A . n A 1 283 LYS 283 282 282 LYS LYS A . n A 1 284 ARG 284 283 283 ARG ARG A . n A 1 285 GLU 285 284 284 GLU GLU A . n A 1 286 GLU 286 285 285 GLU GLU A . n A 1 287 ILE 287 286 286 ILE ILE A . n A 1 288 GLU 288 287 287 GLU GLU A . n A 1 289 ARG 289 288 288 ARG ARG A . n A 1 290 GLY 290 289 289 GLY GLY A . n A 1 291 GLN 291 290 290 GLN GLN A . n A 1 292 VAL 292 291 291 VAL VAL A . n A 1 293 LEU 293 292 292 LEU LEU A . n A 1 294 ALA 294 293 293 ALA ALA A . n A 1 295 LYS 295 294 294 LYS LYS A . n A 1 296 PRO 296 295 295 PRO PRO A . n A 1 297 GLY 297 296 296 GLY GLY A . n A 1 298 THR 298 297 297 THR THR A . n A 1 299 ILE 299 298 298 ILE ILE A . n A 1 300 LYS 300 299 299 LYS LYS A . n A 1 301 PRO 301 300 300 PRO PRO A . n A 1 302 HIS 302 301 301 HIS HIS A . n A 1 303 THR 303 302 302 THR THR A . n A 1 304 LYS 304 303 303 LYS LYS A . n A 1 305 PHE 305 304 304 PHE PHE A . n A 1 306 GLU 306 305 305 GLU GLU A . n A 1 307 SER 307 306 306 SER SER A . n A 1 308 GLU 308 307 307 GLU GLU A . n A 1 309 VAL 309 308 308 VAL VAL A . n A 1 310 TYR 310 309 309 TYR TYR A . n A 1 311 ILE 311 310 310 ILE ILE A . n A 1 312 LEU 312 311 311 LEU LEU A . n A 1 313 SER 313 312 312 SER SER A . n A 1 314 LYS 314 313 313 LYS LYS A . n A 1 315 ASP 315 314 314 ASP ASP A . n A 1 316 GLU 316 315 315 GLU GLU A . n A 1 317 GLY 317 316 316 GLY GLY A . n A 1 318 GLY 318 317 317 GLY GLY A . n A 1 319 ARG 319 318 318 ARG ARG A . n A 1 320 HIS 320 319 319 HIS HIS A . n A 1 321 THR 321 320 320 THR THR A . n A 1 322 PRO 322 321 321 PRO PRO A . n A 1 323 PHE 323 322 322 PHE PHE A . n A 1 324 PHE 324 323 323 PHE PHE A . n A 1 325 LYS 325 324 324 LYS LYS A . n A 1 326 GLY 326 325 325 GLY GLY A . n A 1 327 TYR 327 326 326 TYR TYR A . n A 1 328 ARG 328 327 327 ARG ARG A . n A 1 329 PRO 329 328 328 PRO PRO A . n A 1 330 GLN 330 329 329 GLN GLN A . n A 1 331 PHE 331 330 330 PHE PHE A . n A 1 332 TYR 332 331 331 TYR TYR A . n A 1 333 PHE 333 332 332 PHE PHE A . n A 1 334 ARG 334 333 333 ARG ARG A . n A 1 335 THR 335 334 334 THR THR A . n A 1 336 THR 336 335 335 THR THR A . n A 1 337 ASP 337 336 336 ASP ASP A . n A 1 338 VAL 338 337 337 VAL VAL A . n A 1 339 THR 339 338 338 THR THR A . n A 1 340 GLY 340 339 339 GLY GLY A . n A 1 341 THR 341 340 340 THR THR A . n A 1 342 ILE 342 341 341 ILE ILE A . n A 1 343 GLU 343 342 342 GLU GLU A . n A 1 344 LEU 344 343 343 LEU LEU A . n A 1 345 PRO 345 344 344 PRO PRO A . n A 1 346 GLU 346 345 345 GLU GLU A . n A 1 347 GLY 347 346 346 GLY GLY A . n A 1 348 VAL 348 347 347 VAL VAL A . n A 1 349 GLU 349 348 348 GLU GLU A . n A 1 350 MET 350 349 349 MET MET A . n A 1 351 VAL 351 350 350 VAL VAL A . n A 1 352 MET 352 351 351 MET MET A . n A 1 353 PRO 353 352 352 PRO PRO A . n A 1 354 GLY 354 353 353 GLY GLY A . n A 1 355 ASP 355 354 354 ASP ASP A . n A 1 356 ASN 356 355 355 ASN ASN A . n A 1 357 ILE 357 356 356 ILE ILE A . n A 1 358 LYS 358 357 357 LYS LYS A . n A 1 359 MET 359 358 358 MET MET A . n A 1 360 VAL 360 359 359 VAL VAL A . n A 1 361 VAL 361 360 360 VAL VAL A . n A 1 362 THR 362 361 361 THR THR A . n A 1 363 LEU 363 362 362 LEU LEU A . n A 1 364 ILE 364 363 363 ILE ILE A . n A 1 365 HIS 365 364 364 HIS HIS A . n A 1 366 PRO 366 365 365 PRO PRO A . n A 1 367 ILE 367 366 366 ILE ILE A . n A 1 368 ALA 368 367 367 ALA ALA A . n A 1 369 MET 369 368 368 MET MET A . n A 1 370 ASP 370 369 369 ASP ASP A . n A 1 371 ASP 371 370 370 ASP ASP A . n A 1 372 GLY 372 371 371 GLY GLY A . n A 1 373 LEU 373 372 372 LEU LEU A . n A 1 374 ARG 374 373 373 ARG ARG A . n A 1 375 PHE 375 374 374 PHE PHE A . n A 1 376 ALA 376 375 375 ALA ALA A . n A 1 377 ILE 377 376 376 ILE ILE A . n A 1 378 ARG 378 377 377 ARG ARG A . n A 1 379 GLU 379 378 378 GLU GLU A . n A 1 380 GLY 380 379 379 GLY GLY A . n A 1 381 GLY 381 380 380 GLY GLY A . n A 1 382 ARG 382 381 381 ARG ARG A . n A 1 383 THR 383 382 382 THR THR A . n A 1 384 VAL 384 383 383 VAL VAL A . n A 1 385 GLY 385 384 384 GLY GLY A . n A 1 386 ALA 386 385 385 ALA ALA A . n A 1 387 GLY 387 386 386 GLY GLY A . n A 1 388 VAL 388 387 387 VAL VAL A . n A 1 389 VAL 389 388 388 VAL VAL A . n A 1 390 ALA 390 389 389 ALA ALA A . n A 1 391 LYS 391 390 390 LYS LYS A . n A 1 392 VAL 392 391 391 VAL VAL A . n A 1 393 LEU 393 392 392 LEU LEU A . n A 1 394 GLY 394 393 393 GLY GLY A . n B 2 1 SER 1 1 1 SER SER B . n B 2 2 BB9 2 2 2 BB9 BB9 B . n B 2 3 MEN 3 3 3 MEN MEN B . n B 2 4 BB6 4 4 4 BB6 BB6 B . n B 2 5 VAL 5 5 5 VAL VAL B . n B 2 6 BB7 6 6 6 BB7 BB7 B . n B 2 7 GLY 7 7 7 GLY GLY B . n B 2 8 BB8 8 8 8 BB8 BB8 B . n B 2 9 BB9 9 9 9 BB9 BB9 B . n B 2 10 BB9 10 10 10 BB9 BB9 B . n B 2 11 MH6 11 11 11 MH6 MH6 B . n B 2 12 7BB 12 12 12 7BB 7BB B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GDP 1 501 501 GDP GDP A . D 4 MG 1 503 503 MG MG A . E 5 HOH 1 394 4 HOH HOH A . E 5 HOH 2 395 5 HOH HOH A . E 5 HOH 3 396 6 HOH HOH A . E 5 HOH 4 397 7 HOH HOH A . E 5 HOH 5 398 8 HOH HOH A . E 5 HOH 6 399 9 HOH HOH A . E 5 HOH 7 400 10 HOH HOH A . E 5 HOH 8 401 11 HOH HOH A . E 5 HOH 9 402 12 HOH HOH A . E 5 HOH 10 403 13 HOH HOH A . E 5 HOH 11 404 14 HOH HOH A . E 5 HOH 12 405 15 HOH HOH A . E 5 HOH 13 406 16 HOH HOH A . E 5 HOH 14 407 17 HOH HOH A . E 5 HOH 15 408 19 HOH HOH A . E 5 HOH 16 409 20 HOH HOH A . E 5 HOH 17 410 21 HOH HOH A . E 5 HOH 18 411 22 HOH HOH A . E 5 HOH 19 412 23 HOH HOH A . E 5 HOH 20 413 24 HOH HOH A . E 5 HOH 21 414 25 HOH HOH A . E 5 HOH 22 415 29 HOH HOH A . E 5 HOH 23 416 31 HOH HOH A . E 5 HOH 24 417 33 HOH HOH A . E 5 HOH 25 418 34 HOH HOH A . E 5 HOH 26 419 35 HOH HOH A . E 5 HOH 27 420 36 HOH HOH A . E 5 HOH 28 421 37 HOH HOH A . E 5 HOH 29 422 38 HOH HOH A . E 5 HOH 30 423 39 HOH HOH A . E 5 HOH 31 424 40 HOH HOH A . E 5 HOH 32 425 41 HOH HOH A . E 5 HOH 33 426 42 HOH HOH A . E 5 HOH 34 427 43 HOH HOH A . E 5 HOH 35 428 44 HOH HOH A . E 5 HOH 36 429 45 HOH HOH A . E 5 HOH 37 430 46 HOH HOH A . E 5 HOH 38 431 47 HOH HOH A . E 5 HOH 39 432 48 HOH HOH A . E 5 HOH 40 433 50 HOH HOH A . E 5 HOH 41 434 51 HOH HOH A . E 5 HOH 42 435 52 HOH HOH A . E 5 HOH 43 436 53 HOH HOH A . E 5 HOH 44 437 55 HOH HOH A . E 5 HOH 45 438 56 HOH HOH A . E 5 HOH 46 439 57 HOH HOH A . E 5 HOH 47 440 58 HOH HOH A . E 5 HOH 48 441 59 HOH HOH A . E 5 HOH 49 442 60 HOH HOH A . E 5 HOH 50 443 61 HOH HOH A . E 5 HOH 51 444 63 HOH HOH A . E 5 HOH 52 445 64 HOH HOH A . E 5 HOH 53 446 65 HOH HOH A . E 5 HOH 54 447 66 HOH HOH A . E 5 HOH 55 448 67 HOH HOH A . E 5 HOH 56 449 70 HOH HOH A . E 5 HOH 57 450 71 HOH HOH A . E 5 HOH 58 451 74 HOH HOH A . E 5 HOH 59 452 76 HOH HOH A . E 5 HOH 60 453 77 HOH HOH A . E 5 HOH 61 454 78 HOH HOH A . E 5 HOH 62 455 79 HOH HOH A . E 5 HOH 63 456 80 HOH HOH A . E 5 HOH 64 457 82 HOH HOH A . E 5 HOH 65 458 83 HOH HOH A . E 5 HOH 66 459 84 HOH HOH A . E 5 HOH 67 460 85 HOH HOH A . E 5 HOH 68 461 86 HOH HOH A . E 5 HOH 69 462 88 HOH HOH A . E 5 HOH 70 463 89 HOH HOH A . E 5 HOH 71 464 91 HOH HOH A . E 5 HOH 72 465 92 HOH HOH A . E 5 HOH 73 466 93 HOH HOH A . E 5 HOH 74 467 94 HOH HOH A . E 5 HOH 75 468 95 HOH HOH A . E 5 HOH 76 469 97 HOH HOH A . E 5 HOH 77 470 98 HOH HOH A . E 5 HOH 78 471 106 HOH HOH A . E 5 HOH 79 472 107 HOH HOH A . E 5 HOH 80 473 110 HOH HOH A . E 5 HOH 81 474 111 HOH HOH A . E 5 HOH 82 475 112 HOH HOH A . F 5 HOH 1 13 1 HOH HOH B . F 5 HOH 2 14 2 HOH HOH B . F 5 HOH 3 15 3 HOH HOH B . F 5 HOH 4 18 18 HOH HOH B . F 5 HOH 5 54 54 HOH HOH B . F 5 HOH 6 81 81 HOH HOH B . F 5 HOH 7 87 87 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_001072 _pdbx_molecule_features.name 'Thiocillin GE2270 analogue NVP-LFF571' _pdbx_molecule_features.type Thiopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_001072 _pdbx_molecule.asym_id B # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B BB9 2 B BB9 2 ? CYS ? 2 B MEN 3 B MEN 3 ? ASN 'N-METHYL ASPARAGINE' 3 B BB6 4 B BB6 4 ? CYS '(2Z)-2-AMINO-3-SULFANYLBUT-2-ENOIC ACID' 4 B BB7 6 B BB7 6 ? CYS ? 5 B BB8 8 B BB8 8 ? PHE '(2S,3S)-BETA-HYDROXY-PHENYLALANINE' 6 B BB9 9 B BB9 9 ? CYS ? 7 B BB9 10 B BB9 10 ? CYS ? 8 B MH6 11 B MH6 11 ? SER '3-HYDROXY-2-IMINOPROPANOIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2310 ? 1 MORE -22 ? 1 'SSA (A^2)' 17620 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 443 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG1 ? A THR 26 ? A THR 25 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? E HOH . ? A HOH 405 ? 1_555 58.7 ? 2 OG1 ? A THR 26 ? A THR 25 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? E HOH . ? A HOH 433 ? 1_555 144.9 ? 3 O ? E HOH . ? A HOH 405 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? E HOH . ? A HOH 433 ? 1_555 86.8 ? 4 OG1 ? A THR 26 ? A THR 25 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O2B ? C GDP . ? A GDP 501 ? 1_555 85.9 ? 5 O ? E HOH . ? A HOH 405 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O2B ? C GDP . ? A GDP 501 ? 1_555 124.7 ? 6 O ? E HOH . ? A HOH 433 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O2B ? C GDP . ? A GDP 501 ? 1_555 111.9 ? 7 OG1 ? A THR 26 ? A THR 25 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O2A ? C GDP . ? A GDP 501 ? 1_555 95.8 ? 8 O ? E HOH . ? A HOH 405 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O2A ? C GDP . ? A GDP 501 ? 1_555 134.3 ? 9 O ? E HOH . ? A HOH 433 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O2A ? C GDP . ? A GDP 501 ? 1_555 114.9 ? 10 O2B ? C GDP . ? A GDP 501 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O2A ? C GDP . ? A GDP 501 ? 1_555 85.6 ? 11 OG1 ? A THR 26 ? A THR 25 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O1B ? C GDP . ? A GDP 501 ? 1_555 142.6 ? 12 O ? E HOH . ? A HOH 405 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O1B ? C GDP . ? A GDP 501 ? 1_555 135.0 ? 13 O ? E HOH . ? A HOH 433 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O1B ? C GDP . ? A GDP 501 ? 1_555 58.9 ? 14 O2B ? C GDP . ? A GDP 501 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O1B ? C GDP . ? A GDP 501 ? 1_555 57.5 ? 15 O2A ? C GDP . ? A GDP 501 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O1B ? C GDP . ? A GDP 501 ? 1_555 89.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-02 2 'Structure model' 1 1 2012-12-12 3 'Structure model' 2 0 2023-09-13 4 'Structure model' 3 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Polymer sequence' 6 3 'Structure model' 'Refinement description' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Atomic model' 9 4 'Structure model' 'Data collection' 10 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' entity_poly 6 3 'Structure model' pdbx_initial_refinement_model 7 3 'Structure model' pdbx_struct_conn_angle 8 3 'Structure model' struct_conn 9 3 'Structure model' struct_ref_seq_dif 10 3 'Structure model' struct_site 11 4 'Structure model' atom_site 12 4 'Structure model' chem_comp_atom 13 4 'Structure model' chem_comp_bond 14 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.pdbx_synonyms' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.value' 18 3 'Structure model' '_struct_conn.conn_type_id' 19 3 'Structure model' '_struct_conn.id' 20 3 'Structure model' '_struct_conn.pdbx_dist_value' 21 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 3 'Structure model' '_struct_conn.pdbx_value_order' 23 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 3 'Structure model' '_struct_ref_seq_dif.details' 38 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 41 4 'Structure model' '_atom_site.auth_atom_id' 42 4 'Structure model' '_atom_site.label_atom_id' 43 4 'Structure model' '_chem_comp_atom.atom_id' 44 4 'Structure model' '_chem_comp_bond.atom_id_1' 45 4 'Structure model' '_chem_comp_bond.atom_id_2' 46 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 CNX refinement 2002 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3U2Q _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE GE2270A-LIKE ANTIBIOTIC COMPOUND IS REPRESENTED AS POLYMER. THE FIRST 11 RESIDUES OF THE ANTIBIOTIC ARE IDENTICAL TO THE CORRESPONDING RESIDUES IN GE2270A, WITH ONLY THE LAST RESIDUE MODIFIED. ; _pdbx_entry_details.compound_details ;THE GE2270A-LIKE ANTIBIOTIC COMPOUND IS REPRESENTED AS POLYMER. THE FIRST 11 RESIDUES OF THE ANTIBIOTIC ARE IDENTICAL TO THE CORRESPONDING RESIDUES IN GE2270A, WITH ONLY THE LAST RESIDUE MODIFIED ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 7 ? ? 115.10 -78.77 2 1 PRO A 10 ? ? -36.88 128.08 3 1 ASP A 21 ? ? 35.36 39.67 4 1 THR A 33 ? ? -62.45 -81.43 5 1 LYS A 37 ? ? -59.15 -79.03 6 1 PHE A 46 ? ? -36.37 -74.47 7 1 ALA A 52 ? ? -117.30 74.13 8 1 PRO A 53 ? ? -72.14 -135.67 9 1 GLU A 54 ? ? -20.21 -161.23 10 1 GLU A 55 ? ? 164.03 -171.49 11 1 LYS A 56 ? ? 177.77 -103.24 12 1 PRO A 111 ? ? -52.02 109.96 13 1 VAL A 127 ? ? -46.93 109.15 14 1 LEU A 134 ? ? -62.91 99.13 15 1 CYS A 137 ? ? -68.50 2.45 16 1 LEU A 146 ? ? -63.31 3.73 17 1 PRO A 163 ? ? -59.03 68.69 18 1 SER A 173 ? ? -160.58 99.12 19 1 ALA A 174 ? ? -58.10 1.22 20 1 LEU A 175 ? ? -103.14 -62.22 21 1 ASP A 181 ? ? -63.16 76.57 22 1 ALA A 182 ? ? -35.62 -37.81 23 1 ALA A 205 ? ? -21.44 -48.01 24 1 GLU A 215 ? ? -106.64 -68.01 25 1 SER A 221 ? ? -16.47 -62.95 26 1 ILE A 247 ? ? 58.78 -58.03 27 1 SER A 253 ? ? 175.14 150.30 28 1 ARG A 262 ? ? 86.64 -7.42 29 1 ALA A 270 ? ? -35.77 130.86 30 1 PRO A 328 ? ? -100.81 -166.88 31 1 ARG A 333 ? ? 51.53 -71.33 32 1 LYS A 390 ? ? -168.14 116.53 33 1 MEN B 3 ? ? -118.89 -167.62 34 1 VAL B 5 ? ? -145.51 -50.94 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id B _pdbx_validate_chiral.auth_comp_id SER _pdbx_validate_chiral.auth_seq_id 1 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A ALA 1 ? A ALA 2 3 1 Y 1 A LYS 2 ? A LYS 3 4 1 Y 1 A GLU 3 ? A GLU 4 5 1 Y 1 A LYS 4 ? A LYS 5 6 1 Y 1 A PHE 5 ? A PHE 6 7 1 Y 1 A ARG 58 ? A ARG 59 8 1 Y 1 A GLY 59 ? A GLY 60 9 1 Y 1 A ILE 60 ? A ILE 61 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 7BB N N N N 1 7BB O O N N 2 7BB OXT O N N 3 7BB CA C N N 4 7BB CB C N N 5 7BB SG S N N 6 7BB O10 O N N 7 7BB O11 O N N 8 7BB O12 O N N 9 7BB N13 N N N 10 7BB O13 O N N 11 7BB C C N N 12 7BB C49 C N N 13 7BB C50 C N N 14 7BB C51 C N N 15 7BB C52 C N N 16 7BB C53 C N N 17 7BB C54 C N N 18 7BB C55 C N N 19 7BB C56 C N N 20 7BB C57 C N N 21 7BB C58 C N N 22 7BB C59 C N N 23 7BB C60 C N N 24 7BB H H N N 25 7BB H2 H N N 26 7BB HB H N N 27 7BB HSG H N N 28 7BB HO11 H N N 29 7BB HO12 H N N 30 7BB H49 H N N 31 7BB H49A H N N 32 7BB H50 H N N 33 7BB H50A H N N 34 7BB H51 H N N 35 7BB H51A H N N 36 7BB H52 H N N 37 7BB H52A H N N 38 7BB H53 H N N 39 7BB H53A H N N 40 7BB H54 H N N 41 7BB H55 H N N 42 7BB H55A H N N 43 7BB H56 H N N 44 7BB H56A H N N 45 7BB H57 H N N 46 7BB H59 H N N 47 7BB H59A H N N 48 ALA N N N N 49 ALA CA C N S 50 ALA C C N N 51 ALA O O N N 52 ALA CB C N N 53 ALA OXT O N N 54 ALA H H N N 55 ALA H2 H N N 56 ALA HA H N N 57 ALA HB1 H N N 58 ALA HB2 H N N 59 ALA HB3 H N N 60 ALA HXT H N N 61 ARG N N N N 62 ARG CA C N S 63 ARG C C N N 64 ARG O O N N 65 ARG CB C N N 66 ARG CG C N N 67 ARG CD C N N 68 ARG NE N N N 69 ARG CZ C N N 70 ARG NH1 N N N 71 ARG NH2 N N N 72 ARG OXT O N N 73 ARG H H N N 74 ARG H2 H N N 75 ARG HA H N N 76 ARG HB2 H N N 77 ARG HB3 H N N 78 ARG HG2 H N N 79 ARG HG3 H N N 80 ARG HD2 H N N 81 ARG HD3 H N N 82 ARG HE H N N 83 ARG HH11 H N N 84 ARG HH12 H N N 85 ARG HH21 H N N 86 ARG HH22 H N N 87 ARG HXT H N N 88 ASN N N N N 89 ASN CA C N S 90 ASN C C N N 91 ASN O O N N 92 ASN CB C N N 93 ASN CG C N N 94 ASN OD1 O N N 95 ASN ND2 N N N 96 ASN OXT O N N 97 ASN H H N N 98 ASN H2 H N N 99 ASN HA H N N 100 ASN HB2 H N N 101 ASN HB3 H N N 102 ASN HD21 H N N 103 ASN HD22 H N N 104 ASN HXT H N N 105 ASP N N N N 106 ASP CA C N S 107 ASP C C N N 108 ASP O O N N 109 ASP CB C N N 110 ASP CG C N N 111 ASP OD1 O N N 112 ASP OD2 O N N 113 ASP OXT O N N 114 ASP H H N N 115 ASP H2 H N N 116 ASP HA H N N 117 ASP HB2 H N N 118 ASP HB3 H N N 119 ASP HD2 H N N 120 ASP HXT H N N 121 BB6 N N N N 122 BB6 CA C N N 123 BB6 C C N N 124 BB6 O O N N 125 BB6 CB C N N 126 BB6 SG S N N 127 BB6 CD C N N 128 BB6 OXT O N N 129 BB6 H H N N 130 BB6 H2 H N N 131 BB6 HXT H N N 132 BB6 HG H N N 133 BB6 HD1C H N N 134 BB6 HD2C H N N 135 BB6 HD3C H N N 136 BB7 N N N N 137 BB7 CA C N N 138 BB7 C C N N 139 BB7 O O N N 140 BB7 CB C N N 141 BB7 SG S N N 142 BB7 CB1 C N N 143 BB7 OB2 O N N 144 BB7 CB3 C N N 145 BB7 OXT O N N 146 BB7 H H N N 147 BB7 H2 H N N 148 BB7 HXT H N N 149 BB7 HG H N N 150 BB7 H11 H N N 151 BB7 H12 H N N 152 BB7 H31 H N N 153 BB7 H32 H N N 154 BB7 H33 H N N 155 BB8 N N N N 156 BB8 CA C N S 157 BB8 C C N N 158 BB8 CB C N S 159 BB8 OB O N N 160 BB8 CG C Y N 161 BB8 CD1 C Y N 162 BB8 CE1 C Y N 163 BB8 CZ C Y N 164 BB8 CE2 C Y N 165 BB8 CD2 C Y N 166 BB8 O O N N 167 BB8 OXT O N N 168 BB8 H H N N 169 BB8 H2 H N N 170 BB8 HA H N N 171 BB8 HB H N N 172 BB8 HXT H N N 173 BB8 HC H N N 174 BB8 HD1 H N N 175 BB8 HD2 H N N 176 BB8 HE1 H N N 177 BB8 HZ H N N 178 BB8 HE2 H N N 179 BB9 N N N N 180 BB9 CA C N N 181 BB9 C C N N 182 BB9 O O N N 183 BB9 CB C N N 184 BB9 SG S N N 185 BB9 OXT O N N 186 BB9 H H N N 187 BB9 H2 H N N 188 BB9 HB H N N 189 BB9 HXT H N N 190 BB9 HG H N N 191 CYS N N N N 192 CYS CA C N R 193 CYS C C N N 194 CYS O O N N 195 CYS CB C N N 196 CYS SG S N N 197 CYS OXT O N N 198 CYS H H N N 199 CYS H2 H N N 200 CYS HA H N N 201 CYS HB2 H N N 202 CYS HB3 H N N 203 CYS HG H N N 204 CYS HXT H N N 205 GDP PB P N N 206 GDP O1B O N N 207 GDP O2B O N N 208 GDP O3B O N N 209 GDP O3A O N N 210 GDP PA P N N 211 GDP O1A O N N 212 GDP O2A O N N 213 GDP "O5'" O N N 214 GDP "C5'" C N N 215 GDP "C4'" C N R 216 GDP "O4'" O N N 217 GDP "C3'" C N S 218 GDP "O3'" O N N 219 GDP "C2'" C N R 220 GDP "O2'" O N N 221 GDP "C1'" C N R 222 GDP N9 N Y N 223 GDP C8 C Y N 224 GDP N7 N Y N 225 GDP C5 C Y N 226 GDP C6 C N N 227 GDP O6 O N N 228 GDP N1 N N N 229 GDP C2 C N N 230 GDP N2 N N N 231 GDP N3 N N N 232 GDP C4 C Y N 233 GDP HOB2 H N N 234 GDP HOB3 H N N 235 GDP HOA2 H N N 236 GDP "H5'" H N N 237 GDP "H5''" H N N 238 GDP "H4'" H N N 239 GDP "H3'" H N N 240 GDP "HO3'" H N N 241 GDP "H2'" H N N 242 GDP "HO2'" H N N 243 GDP "H1'" H N N 244 GDP H8 H N N 245 GDP HN1 H N N 246 GDP HN21 H N N 247 GDP HN22 H N N 248 GLN N N N N 249 GLN CA C N S 250 GLN C C N N 251 GLN O O N N 252 GLN CB C N N 253 GLN CG C N N 254 GLN CD C N N 255 GLN OE1 O N N 256 GLN NE2 N N N 257 GLN OXT O N N 258 GLN H H N N 259 GLN H2 H N N 260 GLN HA H N N 261 GLN HB2 H N N 262 GLN HB3 H N N 263 GLN HG2 H N N 264 GLN HG3 H N N 265 GLN HE21 H N N 266 GLN HE22 H N N 267 GLN HXT H N N 268 GLU N N N N 269 GLU CA C N S 270 GLU C C N N 271 GLU O O N N 272 GLU CB C N N 273 GLU CG C N N 274 GLU CD C N N 275 GLU OE1 O N N 276 GLU OE2 O N N 277 GLU OXT O N N 278 GLU H H N N 279 GLU H2 H N N 280 GLU HA H N N 281 GLU HB2 H N N 282 GLU HB3 H N N 283 GLU HG2 H N N 284 GLU HG3 H N N 285 GLU HE2 H N N 286 GLU HXT H N N 287 GLY N N N N 288 GLY CA C N N 289 GLY C C N N 290 GLY O O N N 291 GLY OXT O N N 292 GLY H H N N 293 GLY H2 H N N 294 GLY HA2 H N N 295 GLY HA3 H N N 296 GLY HXT H N N 297 HIS N N N N 298 HIS CA C N S 299 HIS C C N N 300 HIS O O N N 301 HIS CB C N N 302 HIS CG C Y N 303 HIS ND1 N Y N 304 HIS CD2 C Y N 305 HIS CE1 C Y N 306 HIS NE2 N Y N 307 HIS OXT O N N 308 HIS H H N N 309 HIS H2 H N N 310 HIS HA H N N 311 HIS HB2 H N N 312 HIS HB3 H N N 313 HIS HD1 H N N 314 HIS HD2 H N N 315 HIS HE1 H N N 316 HIS HE2 H N N 317 HIS HXT H N N 318 HOH O O N N 319 HOH H1 H N N 320 HOH H2 H N N 321 ILE N N N N 322 ILE CA C N S 323 ILE C C N N 324 ILE O O N N 325 ILE CB C N S 326 ILE CG1 C N N 327 ILE CG2 C N N 328 ILE CD1 C N N 329 ILE OXT O N N 330 ILE H H N N 331 ILE H2 H N N 332 ILE HA H N N 333 ILE HB H N N 334 ILE HG12 H N N 335 ILE HG13 H N N 336 ILE HG21 H N N 337 ILE HG22 H N N 338 ILE HG23 H N N 339 ILE HD11 H N N 340 ILE HD12 H N N 341 ILE HD13 H N N 342 ILE HXT H N N 343 LEU N N N N 344 LEU CA C N S 345 LEU C C N N 346 LEU O O N N 347 LEU CB C N N 348 LEU CG C N N 349 LEU CD1 C N N 350 LEU CD2 C N N 351 LEU OXT O N N 352 LEU H H N N 353 LEU H2 H N N 354 LEU HA H N N 355 LEU HB2 H N N 356 LEU HB3 H N N 357 LEU HG H N N 358 LEU HD11 H N N 359 LEU HD12 H N N 360 LEU HD13 H N N 361 LEU HD21 H N N 362 LEU HD22 H N N 363 LEU HD23 H N N 364 LEU HXT H N N 365 LYS N N N N 366 LYS CA C N S 367 LYS C C N N 368 LYS O O N N 369 LYS CB C N N 370 LYS CG C N N 371 LYS CD C N N 372 LYS CE C N N 373 LYS NZ N N N 374 LYS OXT O N N 375 LYS H H N N 376 LYS H2 H N N 377 LYS HA H N N 378 LYS HB2 H N N 379 LYS HB3 H N N 380 LYS HG2 H N N 381 LYS HG3 H N N 382 LYS HD2 H N N 383 LYS HD3 H N N 384 LYS HE2 H N N 385 LYS HE3 H N N 386 LYS HZ1 H N N 387 LYS HZ2 H N N 388 LYS HZ3 H N N 389 LYS HXT H N N 390 MEN N N N N 391 MEN CA C N S 392 MEN C C N N 393 MEN O O N N 394 MEN CB C N N 395 MEN CG C N N 396 MEN OD1 O N N 397 MEN ND2 N N N 398 MEN CE2 C N N 399 MEN OXT O N N 400 MEN H H N N 401 MEN H2 H N N 402 MEN HA H N N 403 MEN HB2 H N N 404 MEN HB3 H N N 405 MEN HD2 H N N 406 MEN HE21 H N N 407 MEN HE22 H N N 408 MEN HE23 H N N 409 MEN HXT H N N 410 MET N N N N 411 MET CA C N S 412 MET C C N N 413 MET O O N N 414 MET CB C N N 415 MET CG C N N 416 MET SD S N N 417 MET CE C N N 418 MET OXT O N N 419 MET H H N N 420 MET H2 H N N 421 MET HA H N N 422 MET HB2 H N N 423 MET HB3 H N N 424 MET HG2 H N N 425 MET HG3 H N N 426 MET HE1 H N N 427 MET HE2 H N N 428 MET HE3 H N N 429 MET HXT H N N 430 MG MG MG N N 431 MH6 N N N N 432 MH6 CA C N N 433 MH6 C C N N 434 MH6 CB C N N 435 MH6 OG O N N 436 MH6 O O N N 437 MH6 OXT O N N 438 MH6 H H N N 439 MH6 HB2 H N N 440 MH6 HB3 H N N 441 MH6 HXT H N N 442 MH6 HG H N N 443 PHE N N N N 444 PHE CA C N S 445 PHE C C N N 446 PHE O O N N 447 PHE CB C N N 448 PHE CG C Y N 449 PHE CD1 C Y N 450 PHE CD2 C Y N 451 PHE CE1 C Y N 452 PHE CE2 C Y N 453 PHE CZ C Y N 454 PHE OXT O N N 455 PHE H H N N 456 PHE H2 H N N 457 PHE HA H N N 458 PHE HB2 H N N 459 PHE HB3 H N N 460 PHE HD1 H N N 461 PHE HD2 H N N 462 PHE HE1 H N N 463 PHE HE2 H N N 464 PHE HZ H N N 465 PHE HXT H N N 466 PRO N N N N 467 PRO CA C N S 468 PRO C C N N 469 PRO O O N N 470 PRO CB C N N 471 PRO CG C N N 472 PRO CD C N N 473 PRO OXT O N N 474 PRO H H N N 475 PRO HA H N N 476 PRO HB2 H N N 477 PRO HB3 H N N 478 PRO HG2 H N N 479 PRO HG3 H N N 480 PRO HD2 H N N 481 PRO HD3 H N N 482 PRO HXT H N N 483 SER N N N N 484 SER CA C N S 485 SER C C N N 486 SER O O N N 487 SER CB C N N 488 SER OG O N N 489 SER OXT O N N 490 SER H H N N 491 SER H2 H N N 492 SER HA H N N 493 SER HB2 H N N 494 SER HB3 H N N 495 SER HG H N N 496 SER HXT H N N 497 THR N N N N 498 THR CA C N S 499 THR C C N N 500 THR O O N N 501 THR CB C N R 502 THR OG1 O N N 503 THR CG2 C N N 504 THR OXT O N N 505 THR H H N N 506 THR H2 H N N 507 THR HA H N N 508 THR HB H N N 509 THR HG1 H N N 510 THR HG21 H N N 511 THR HG22 H N N 512 THR HG23 H N N 513 THR HXT H N N 514 TRP N N N N 515 TRP CA C N S 516 TRP C C N N 517 TRP O O N N 518 TRP CB C N N 519 TRP CG C Y N 520 TRP CD1 C Y N 521 TRP CD2 C Y N 522 TRP NE1 N Y N 523 TRP CE2 C Y N 524 TRP CE3 C Y N 525 TRP CZ2 C Y N 526 TRP CZ3 C Y N 527 TRP CH2 C Y N 528 TRP OXT O N N 529 TRP H H N N 530 TRP H2 H N N 531 TRP HA H N N 532 TRP HB2 H N N 533 TRP HB3 H N N 534 TRP HD1 H N N 535 TRP HE1 H N N 536 TRP HE3 H N N 537 TRP HZ2 H N N 538 TRP HZ3 H N N 539 TRP HH2 H N N 540 TRP HXT H N N 541 TYR N N N N 542 TYR CA C N S 543 TYR C C N N 544 TYR O O N N 545 TYR CB C N N 546 TYR CG C Y N 547 TYR CD1 C Y N 548 TYR CD2 C Y N 549 TYR CE1 C Y N 550 TYR CE2 C Y N 551 TYR CZ C Y N 552 TYR OH O N N 553 TYR OXT O N N 554 TYR H H N N 555 TYR H2 H N N 556 TYR HA H N N 557 TYR HB2 H N N 558 TYR HB3 H N N 559 TYR HD1 H N N 560 TYR HD2 H N N 561 TYR HE1 H N N 562 TYR HE2 H N N 563 TYR HH H N N 564 TYR HXT H N N 565 VAL N N N N 566 VAL CA C N S 567 VAL C C N N 568 VAL O O N N 569 VAL CB C N N 570 VAL CG1 C N N 571 VAL CG2 C N N 572 VAL OXT O N N 573 VAL H H N N 574 VAL H2 H N N 575 VAL HA H N N 576 VAL HB H N N 577 VAL HG11 H N N 578 VAL HG12 H N N 579 VAL HG13 H N N 580 VAL HG21 H N N 581 VAL HG22 H N N 582 VAL HG23 H N N 583 VAL HXT H N N 584 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7BB N CA sing N N 1 7BB N H sing N N 2 7BB OXT C54 sing N N 3 7BB CA N13 sing N N 4 7BB CB CA doub N E 5 7BB SG CB sing N N 6 7BB N13 C49 sing N N 7 7BB N13 C sing N N 8 7BB O13 C60 doub N N 9 7BB C O doub N N 10 7BB C OXT sing N N 11 7BB C50 C49 sing N N 12 7BB C50 C51 sing N N 13 7BB C52 C57 sing N N 14 7BB C53 C52 sing N N 15 7BB C53 C54 sing N N 16 7BB C54 C55 sing N N 17 7BB C55 C56 sing N N 18 7BB C56 C57 sing N N 19 7BB C57 C58 sing N N 20 7BB C58 O10 doub N N 21 7BB C58 O11 sing N N 22 7BB C59 C51 sing N N 23 7BB C60 O12 sing N N 24 7BB C60 C59 sing N N 25 7BB N H2 sing N N 26 7BB CB HB sing N N 27 7BB SG HSG sing N N 28 7BB O11 HO11 sing N N 29 7BB O12 HO12 sing N N 30 7BB C49 H49 sing N N 31 7BB C49 H49A sing N N 32 7BB C50 H50 sing N N 33 7BB C50 H50A sing N N 34 7BB C51 H51 sing N N 35 7BB C51 H51A sing N N 36 7BB C52 H52 sing N N 37 7BB C52 H52A sing N N 38 7BB C53 H53 sing N N 39 7BB C53 H53A sing N N 40 7BB C54 H54 sing N N 41 7BB C55 H55 sing N N 42 7BB C55 H55A sing N N 43 7BB C56 H56 sing N N 44 7BB C56 H56A sing N N 45 7BB C57 H57 sing N N 46 7BB C59 H59 sing N N 47 7BB C59 H59A sing N N 48 ALA N CA sing N N 49 ALA N H sing N N 50 ALA N H2 sing N N 51 ALA CA C sing N N 52 ALA CA CB sing N N 53 ALA CA HA sing N N 54 ALA C O doub N N 55 ALA C OXT sing N N 56 ALA CB HB1 sing N N 57 ALA CB HB2 sing N N 58 ALA CB HB3 sing N N 59 ALA OXT HXT sing N N 60 ARG N CA sing N N 61 ARG N H sing N N 62 ARG N H2 sing N N 63 ARG CA C sing N N 64 ARG CA CB sing N N 65 ARG CA HA sing N N 66 ARG C O doub N N 67 ARG C OXT sing N N 68 ARG CB CG sing N N 69 ARG CB HB2 sing N N 70 ARG CB HB3 sing N N 71 ARG CG CD sing N N 72 ARG CG HG2 sing N N 73 ARG CG HG3 sing N N 74 ARG CD NE sing N N 75 ARG CD HD2 sing N N 76 ARG CD HD3 sing N N 77 ARG NE CZ sing N N 78 ARG NE HE sing N N 79 ARG CZ NH1 sing N N 80 ARG CZ NH2 doub N N 81 ARG NH1 HH11 sing N N 82 ARG NH1 HH12 sing N N 83 ARG NH2 HH21 sing N N 84 ARG NH2 HH22 sing N N 85 ARG OXT HXT sing N N 86 ASN N CA sing N N 87 ASN N H sing N N 88 ASN N H2 sing N N 89 ASN CA C sing N N 90 ASN CA CB sing N N 91 ASN CA HA sing N N 92 ASN C O doub N N 93 ASN C OXT sing N N 94 ASN CB CG sing N N 95 ASN CB HB2 sing N N 96 ASN CB HB3 sing N N 97 ASN CG OD1 doub N N 98 ASN CG ND2 sing N N 99 ASN ND2 HD21 sing N N 100 ASN ND2 HD22 sing N N 101 ASN OXT HXT sing N N 102 ASP N CA sing N N 103 ASP N H sing N N 104 ASP N H2 sing N N 105 ASP CA C sing N N 106 ASP CA CB sing N N 107 ASP CA HA sing N N 108 ASP C O doub N N 109 ASP C OXT sing N N 110 ASP CB CG sing N N 111 ASP CB HB2 sing N N 112 ASP CB HB3 sing N N 113 ASP CG OD1 doub N N 114 ASP CG OD2 sing N N 115 ASP OD2 HD2 sing N N 116 ASP OXT HXT sing N N 117 BB6 N CA sing N N 118 BB6 CA C sing N N 119 BB6 CA CB doub N N 120 BB6 C O doub N N 121 BB6 C OXT sing N Z 122 BB6 CB SG sing N N 123 BB6 CB CD sing N N 124 BB6 N H sing N N 125 BB6 N H2 sing N N 126 BB6 OXT HXT sing N N 127 BB6 SG HG sing N N 128 BB6 CD HD1C sing N N 129 BB6 CD HD2C sing N N 130 BB6 CD HD3C sing N N 131 BB7 N CA sing N N 132 BB7 CA C sing N N 133 BB7 CA CB doub N N 134 BB7 C O doub N N 135 BB7 C OXT sing N Z 136 BB7 CB SG sing N N 137 BB7 CB CB1 sing N N 138 BB7 CB1 OB2 sing N N 139 BB7 OB2 CB3 sing N N 140 BB7 N H sing N N 141 BB7 N H2 sing N N 142 BB7 OXT HXT sing N N 143 BB7 SG HG sing N N 144 BB7 CB1 H11 sing N N 145 BB7 CB1 H12 sing N N 146 BB7 CB3 H31 sing N N 147 BB7 CB3 H32 sing N N 148 BB7 CB3 H33 sing N N 149 BB8 N CA sing N N 150 BB8 CA C sing N N 151 BB8 CA CB sing N N 152 BB8 C OXT sing N N 153 BB8 CB OB sing N N 154 BB8 CB CG sing N N 155 BB8 CG CD1 sing Y N 156 BB8 CG CD2 doub Y N 157 BB8 CD1 CE1 doub Y N 158 BB8 CE1 CZ sing Y N 159 BB8 CZ CE2 doub Y N 160 BB8 CE2 CD2 sing Y N 161 BB8 N H sing N N 162 BB8 N H2 sing N N 163 BB8 CA HA sing N N 164 BB8 C O doub N N 165 BB8 CB HB sing N N 166 BB8 OXT HXT sing N N 167 BB8 OB HC sing N N 168 BB8 CD1 HD1 sing N N 169 BB8 CD2 HD2 sing N N 170 BB8 CE1 HE1 sing N N 171 BB8 CZ HZ sing N N 172 BB8 CE2 HE2 sing N N 173 BB9 N CA sing N N 174 BB9 CA C sing N N 175 BB9 CA CB doub N N 176 BB9 C O doub N N 177 BB9 C OXT sing N Z 178 BB9 CB SG sing N N 179 BB9 N H sing N N 180 BB9 N H2 sing N N 181 BB9 CB HB sing N N 182 BB9 OXT HXT sing N N 183 BB9 SG HG sing N N 184 CYS N CA sing N N 185 CYS N H sing N N 186 CYS N H2 sing N N 187 CYS CA C sing N N 188 CYS CA CB sing N N 189 CYS CA HA sing N N 190 CYS C O doub N N 191 CYS C OXT sing N N 192 CYS CB SG sing N N 193 CYS CB HB2 sing N N 194 CYS CB HB3 sing N N 195 CYS SG HG sing N N 196 CYS OXT HXT sing N N 197 GDP PB O1B doub N N 198 GDP PB O2B sing N N 199 GDP PB O3B sing N N 200 GDP PB O3A sing N N 201 GDP O2B HOB2 sing N N 202 GDP O3B HOB3 sing N N 203 GDP O3A PA sing N N 204 GDP PA O1A doub N N 205 GDP PA O2A sing N N 206 GDP PA "O5'" sing N N 207 GDP O2A HOA2 sing N N 208 GDP "O5'" "C5'" sing N N 209 GDP "C5'" "C4'" sing N N 210 GDP "C5'" "H5'" sing N N 211 GDP "C5'" "H5''" sing N N 212 GDP "C4'" "O4'" sing N N 213 GDP "C4'" "C3'" sing N N 214 GDP "C4'" "H4'" sing N N 215 GDP "O4'" "C1'" sing N N 216 GDP "C3'" "O3'" sing N N 217 GDP "C3'" "C2'" sing N N 218 GDP "C3'" "H3'" sing N N 219 GDP "O3'" "HO3'" sing N N 220 GDP "C2'" "O2'" sing N N 221 GDP "C2'" "C1'" sing N N 222 GDP "C2'" "H2'" sing N N 223 GDP "O2'" "HO2'" sing N N 224 GDP "C1'" N9 sing N N 225 GDP "C1'" "H1'" sing N N 226 GDP N9 C8 sing Y N 227 GDP N9 C4 sing Y N 228 GDP C8 N7 doub Y N 229 GDP C8 H8 sing N N 230 GDP N7 C5 sing Y N 231 GDP C5 C6 sing N N 232 GDP C5 C4 doub Y N 233 GDP C6 O6 doub N N 234 GDP C6 N1 sing N N 235 GDP N1 C2 sing N N 236 GDP N1 HN1 sing N N 237 GDP C2 N2 sing N N 238 GDP C2 N3 doub N N 239 GDP N2 HN21 sing N N 240 GDP N2 HN22 sing N N 241 GDP N3 C4 sing N N 242 GLN N CA sing N N 243 GLN N H sing N N 244 GLN N H2 sing N N 245 GLN CA C sing N N 246 GLN CA CB sing N N 247 GLN CA HA sing N N 248 GLN C O doub N N 249 GLN C OXT sing N N 250 GLN CB CG sing N N 251 GLN CB HB2 sing N N 252 GLN CB HB3 sing N N 253 GLN CG CD sing N N 254 GLN CG HG2 sing N N 255 GLN CG HG3 sing N N 256 GLN CD OE1 doub N N 257 GLN CD NE2 sing N N 258 GLN NE2 HE21 sing N N 259 GLN NE2 HE22 sing N N 260 GLN OXT HXT sing N N 261 GLU N CA sing N N 262 GLU N H sing N N 263 GLU N H2 sing N N 264 GLU CA C sing N N 265 GLU CA CB sing N N 266 GLU CA HA sing N N 267 GLU C O doub N N 268 GLU C OXT sing N N 269 GLU CB CG sing N N 270 GLU CB HB2 sing N N 271 GLU CB HB3 sing N N 272 GLU CG CD sing N N 273 GLU CG HG2 sing N N 274 GLU CG HG3 sing N N 275 GLU CD OE1 doub N N 276 GLU CD OE2 sing N N 277 GLU OE2 HE2 sing N N 278 GLU OXT HXT sing N N 279 GLY N CA sing N N 280 GLY N H sing N N 281 GLY N H2 sing N N 282 GLY CA C sing N N 283 GLY CA HA2 sing N N 284 GLY CA HA3 sing N N 285 GLY C O doub N N 286 GLY C OXT sing N N 287 GLY OXT HXT sing N N 288 HIS N CA sing N N 289 HIS N H sing N N 290 HIS N H2 sing N N 291 HIS CA C sing N N 292 HIS CA CB sing N N 293 HIS CA HA sing N N 294 HIS C O doub N N 295 HIS C OXT sing N N 296 HIS CB CG sing N N 297 HIS CB HB2 sing N N 298 HIS CB HB3 sing N N 299 HIS CG ND1 sing Y N 300 HIS CG CD2 doub Y N 301 HIS ND1 CE1 doub Y N 302 HIS ND1 HD1 sing N N 303 HIS CD2 NE2 sing Y N 304 HIS CD2 HD2 sing N N 305 HIS CE1 NE2 sing Y N 306 HIS CE1 HE1 sing N N 307 HIS NE2 HE2 sing N N 308 HIS OXT HXT sing N N 309 HOH O H1 sing N N 310 HOH O H2 sing N N 311 ILE N CA sing N N 312 ILE N H sing N N 313 ILE N H2 sing N N 314 ILE CA C sing N N 315 ILE CA CB sing N N 316 ILE CA HA sing N N 317 ILE C O doub N N 318 ILE C OXT sing N N 319 ILE CB CG1 sing N N 320 ILE CB CG2 sing N N 321 ILE CB HB sing N N 322 ILE CG1 CD1 sing N N 323 ILE CG1 HG12 sing N N 324 ILE CG1 HG13 sing N N 325 ILE CG2 HG21 sing N N 326 ILE CG2 HG22 sing N N 327 ILE CG2 HG23 sing N N 328 ILE CD1 HD11 sing N N 329 ILE CD1 HD12 sing N N 330 ILE CD1 HD13 sing N N 331 ILE OXT HXT sing N N 332 LEU N CA sing N N 333 LEU N H sing N N 334 LEU N H2 sing N N 335 LEU CA C sing N N 336 LEU CA CB sing N N 337 LEU CA HA sing N N 338 LEU C O doub N N 339 LEU C OXT sing N N 340 LEU CB CG sing N N 341 LEU CB HB2 sing N N 342 LEU CB HB3 sing N N 343 LEU CG CD1 sing N N 344 LEU CG CD2 sing N N 345 LEU CG HG sing N N 346 LEU CD1 HD11 sing N N 347 LEU CD1 HD12 sing N N 348 LEU CD1 HD13 sing N N 349 LEU CD2 HD21 sing N N 350 LEU CD2 HD22 sing N N 351 LEU CD2 HD23 sing N N 352 LEU OXT HXT sing N N 353 LYS N CA sing N N 354 LYS N H sing N N 355 LYS N H2 sing N N 356 LYS CA C sing N N 357 LYS CA CB sing N N 358 LYS CA HA sing N N 359 LYS C O doub N N 360 LYS C OXT sing N N 361 LYS CB CG sing N N 362 LYS CB HB2 sing N N 363 LYS CB HB3 sing N N 364 LYS CG CD sing N N 365 LYS CG HG2 sing N N 366 LYS CG HG3 sing N N 367 LYS CD CE sing N N 368 LYS CD HD2 sing N N 369 LYS CD HD3 sing N N 370 LYS CE NZ sing N N 371 LYS CE HE2 sing N N 372 LYS CE HE3 sing N N 373 LYS NZ HZ1 sing N N 374 LYS NZ HZ2 sing N N 375 LYS NZ HZ3 sing N N 376 LYS OXT HXT sing N N 377 MEN N CA sing N N 378 MEN N H sing N N 379 MEN N H2 sing N N 380 MEN CA C sing N N 381 MEN CA CB sing N N 382 MEN CA HA sing N N 383 MEN C O doub N N 384 MEN C OXT sing N N 385 MEN CB CG sing N N 386 MEN CB HB2 sing N N 387 MEN CB HB3 sing N N 388 MEN CG OD1 doub N N 389 MEN CG ND2 sing N N 390 MEN ND2 CE2 sing N N 391 MEN ND2 HD2 sing N N 392 MEN CE2 HE21 sing N N 393 MEN CE2 HE22 sing N N 394 MEN CE2 HE23 sing N N 395 MEN OXT HXT sing N N 396 MET N CA sing N N 397 MET N H sing N N 398 MET N H2 sing N N 399 MET CA C sing N N 400 MET CA CB sing N N 401 MET CA HA sing N N 402 MET C O doub N N 403 MET C OXT sing N N 404 MET CB CG sing N N 405 MET CB HB2 sing N N 406 MET CB HB3 sing N N 407 MET CG SD sing N N 408 MET CG HG2 sing N N 409 MET CG HG3 sing N N 410 MET SD CE sing N N 411 MET CE HE1 sing N N 412 MET CE HE2 sing N N 413 MET CE HE3 sing N N 414 MET OXT HXT sing N N 415 MH6 N CA doub N N 416 MH6 CA C sing N N 417 MH6 CA CB sing N N 418 MH6 C O doub N N 419 MH6 C OXT sing N N 420 MH6 CB OG sing N N 421 MH6 N H sing N N 422 MH6 CB HB2 sing N N 423 MH6 CB HB3 sing N N 424 MH6 OXT HXT sing N N 425 MH6 OG HG sing N N 426 PHE N CA sing N N 427 PHE N H sing N N 428 PHE N H2 sing N N 429 PHE CA C sing N N 430 PHE CA CB sing N N 431 PHE CA HA sing N N 432 PHE C O doub N N 433 PHE C OXT sing N N 434 PHE CB CG sing N N 435 PHE CB HB2 sing N N 436 PHE CB HB3 sing N N 437 PHE CG CD1 doub Y N 438 PHE CG CD2 sing Y N 439 PHE CD1 CE1 sing Y N 440 PHE CD1 HD1 sing N N 441 PHE CD2 CE2 doub Y N 442 PHE CD2 HD2 sing N N 443 PHE CE1 CZ doub Y N 444 PHE CE1 HE1 sing N N 445 PHE CE2 CZ sing Y N 446 PHE CE2 HE2 sing N N 447 PHE CZ HZ sing N N 448 PHE OXT HXT sing N N 449 PRO N CA sing N N 450 PRO N CD sing N N 451 PRO N H sing N N 452 PRO CA C sing N N 453 PRO CA CB sing N N 454 PRO CA HA sing N N 455 PRO C O doub N N 456 PRO C OXT sing N N 457 PRO CB CG sing N N 458 PRO CB HB2 sing N N 459 PRO CB HB3 sing N N 460 PRO CG CD sing N N 461 PRO CG HG2 sing N N 462 PRO CG HG3 sing N N 463 PRO CD HD2 sing N N 464 PRO CD HD3 sing N N 465 PRO OXT HXT sing N N 466 SER N CA sing N N 467 SER N H sing N N 468 SER N H2 sing N N 469 SER CA C sing N N 470 SER CA CB sing N N 471 SER CA HA sing N N 472 SER C O doub N N 473 SER C OXT sing N N 474 SER CB OG sing N N 475 SER CB HB2 sing N N 476 SER CB HB3 sing N N 477 SER OG HG sing N N 478 SER OXT HXT sing N N 479 THR N CA sing N N 480 THR N H sing N N 481 THR N H2 sing N N 482 THR CA C sing N N 483 THR CA CB sing N N 484 THR CA HA sing N N 485 THR C O doub N N 486 THR C OXT sing N N 487 THR CB OG1 sing N N 488 THR CB CG2 sing N N 489 THR CB HB sing N N 490 THR OG1 HG1 sing N N 491 THR CG2 HG21 sing N N 492 THR CG2 HG22 sing N N 493 THR CG2 HG23 sing N N 494 THR OXT HXT sing N N 495 TRP N CA sing N N 496 TRP N H sing N N 497 TRP N H2 sing N N 498 TRP CA C sing N N 499 TRP CA CB sing N N 500 TRP CA HA sing N N 501 TRP C O doub N N 502 TRP C OXT sing N N 503 TRP CB CG sing N N 504 TRP CB HB2 sing N N 505 TRP CB HB3 sing N N 506 TRP CG CD1 doub Y N 507 TRP CG CD2 sing Y N 508 TRP CD1 NE1 sing Y N 509 TRP CD1 HD1 sing N N 510 TRP CD2 CE2 doub Y N 511 TRP CD2 CE3 sing Y N 512 TRP NE1 CE2 sing Y N 513 TRP NE1 HE1 sing N N 514 TRP CE2 CZ2 sing Y N 515 TRP CE3 CZ3 doub Y N 516 TRP CE3 HE3 sing N N 517 TRP CZ2 CH2 doub Y N 518 TRP CZ2 HZ2 sing N N 519 TRP CZ3 CH2 sing Y N 520 TRP CZ3 HZ3 sing N N 521 TRP CH2 HH2 sing N N 522 TRP OXT HXT sing N N 523 TYR N CA sing N N 524 TYR N H sing N N 525 TYR N H2 sing N N 526 TYR CA C sing N N 527 TYR CA CB sing N N 528 TYR CA HA sing N N 529 TYR C O doub N N 530 TYR C OXT sing N N 531 TYR CB CG sing N N 532 TYR CB HB2 sing N N 533 TYR CB HB3 sing N N 534 TYR CG CD1 doub Y N 535 TYR CG CD2 sing Y N 536 TYR CD1 CE1 sing Y N 537 TYR CD1 HD1 sing N N 538 TYR CD2 CE2 doub Y N 539 TYR CD2 HD2 sing N N 540 TYR CE1 CZ doub Y N 541 TYR CE1 HE1 sing N N 542 TYR CE2 CZ sing Y N 543 TYR CE2 HE2 sing N N 544 TYR CZ OH sing N N 545 TYR OH HH sing N N 546 TYR OXT HXT sing N N 547 VAL N CA sing N N 548 VAL N H sing N N 549 VAL N H2 sing N N 550 VAL CA C sing N N 551 VAL CA CB sing N N 552 VAL CA HA sing N N 553 VAL C O doub N N 554 VAL C OXT sing N N 555 VAL CB CG1 sing N N 556 VAL CB CG2 sing N N 557 VAL CB HB sing N N 558 VAL CG1 HG11 sing N N 559 VAL CG1 HG12 sing N N 560 VAL CG1 HG13 sing N N 561 VAL CG2 HG21 sing N N 562 VAL CG2 HG22 sing N N 563 VAL CG2 HG23 sing N N 564 VAL OXT HXT sing N N 565 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "GUANOSINE-5'-DIPHOSPHATE" GDP 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1D8T _pdbx_initial_refinement_model.details 'PDB entry 1D8T' #