HEADER MEMBRANE PROTEIN 04-OCT-11 3U32 TITLE ATP SYNTHASE C10 RING REACTED WITH DCCD AT PH 5.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE SUBUNIT C, MITOCHONDRIAL; COMPND 3 CHAIN: K, L, M, N, O; COMPND 4 SYNONYM: LIPID-BINDING PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS F1FO ATP SYNTHASE, PROTON PORE, C10 RING, DCCD-REACTED, MEMBRANE KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SYMERSKY,V.PAGADALA,D.OSOWSKI,A.KRAH,T.MEIER,J.FARALDO-GOMEZ, AUTHOR 2 D.M.MUELLER REVDAT 5 20-NOV-24 3U32 1 REMARK REVDAT 4 13-SEP-23 3U32 1 REMARK LINK REVDAT 3 13-JUN-12 3U32 1 JRNL REVDAT 2 18-APR-12 3U32 1 JRNL REVDAT 1 08-FEB-12 3U32 0 JRNL AUTH J.SYMERSKY,V.PAGADALA,D.OSOWSKI,A.KRAH,T.MEIER, JRNL AUTH 2 J.D.FARALDO-GOMEZ,D.M.MUELLER JRNL TITL STRUCTURE OF THE C(10) RING OF THE YEAST MITOCHONDRIAL ATP JRNL TITL 2 SYNTHASE IN THE OPEN CONFORMATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 485 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22504883 JRNL DOI 10.1038/NSMB.2284 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 23303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1260 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1553 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2624 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : -2.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.652 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2819 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3846 ; 1.213 ; 2.041 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 4.092 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 59 ;31.250 ;22.542 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 415 ;13.947 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;12.351 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1977 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1864 ; 0.471 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2964 ; 0.824 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 955 ; 1.571 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 868 ; 2.605 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 1 K 41 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2656 10.6911 31.4112 REMARK 3 T TENSOR REMARK 3 T11: 0.1462 T22: 0.1517 REMARK 3 T33: 0.1734 T12: -0.0392 REMARK 3 T13: -0.0161 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.7998 L22: 0.6306 REMARK 3 L33: 23.8036 L12: -0.0478 REMARK 3 L13: -2.1432 L23: -1.3369 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: -0.3055 S13: 0.0761 REMARK 3 S21: 0.2651 S22: 0.0383 S23: -0.0441 REMARK 3 S31: -0.0751 S32: 0.0636 S33: -0.0801 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 42 K 74 REMARK 3 ORIGIN FOR THE GROUP (A): 36.0511 19.1790 28.0935 REMARK 3 T TENSOR REMARK 3 T11: 0.2181 T22: 0.1793 REMARK 3 T33: 0.2423 T12: -0.0679 REMARK 3 T13: -0.0209 T23: -0.0631 REMARK 3 L TENSOR REMARK 3 L11: 0.8209 L22: 0.9545 REMARK 3 L33: 22.7492 L12: -0.3060 REMARK 3 L13: -1.2510 L23: -1.0869 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: -0.3436 S13: 0.1559 REMARK 3 S21: 0.3673 S22: -0.0430 S23: -0.0871 REMARK 3 S31: -0.6305 S32: 0.7302 S33: 0.0709 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 41 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3994 13.3335 31.7431 REMARK 3 T TENSOR REMARK 3 T11: 0.1626 T22: 0.1452 REMARK 3 T33: 0.1421 T12: -0.0369 REMARK 3 T13: 0.0187 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 0.7745 L22: 0.8061 REMARK 3 L33: 25.3547 L12: -0.0486 REMARK 3 L13: -0.9689 L23: -2.1172 REMARK 3 S TENSOR REMARK 3 S11: 0.1283 S12: -0.3246 S13: 0.1225 REMARK 3 S21: 0.2812 S22: 0.0945 S23: 0.0260 REMARK 3 S31: -0.1333 S32: -0.0001 S33: -0.2228 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 42 L 75 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1282 20.6894 28.3017 REMARK 3 T TENSOR REMARK 3 T11: 0.2213 T22: 0.1193 REMARK 3 T33: 0.2444 T12: -0.0143 REMARK 3 T13: 0.0269 T23: -0.0691 REMARK 3 L TENSOR REMARK 3 L11: 0.8531 L22: 1.0115 REMARK 3 L33: 16.2000 L12: -0.0415 REMARK 3 L13: -0.9576 L23: -1.0315 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: -0.3083 S13: 0.1276 REMARK 3 S21: 0.3359 S22: -0.0371 S23: -0.0436 REMARK 3 S31: -0.7337 S32: 0.2346 S33: 0.0226 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 1 M 41 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5237 10.8198 31.9614 REMARK 3 T TENSOR REMARK 3 T11: 0.1787 T22: 0.1523 REMARK 3 T33: 0.1301 T12: -0.0452 REMARK 3 T13: 0.0474 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.6184 L22: 1.0341 REMARK 3 L33: 23.5997 L12: -0.1484 REMARK 3 L13: 0.0260 L23: -2.5071 REMARK 3 S TENSOR REMARK 3 S11: 0.1045 S12: -0.3050 S13: 0.0457 REMARK 3 S21: 0.3374 S22: 0.0865 S23: 0.0922 REMARK 3 S31: -0.1824 S32: -0.0100 S33: -0.1910 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 42 M 75 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9375 14.4606 28.2335 REMARK 3 T TENSOR REMARK 3 T11: 0.1908 T22: 0.1755 REMARK 3 T33: 0.2297 T12: 0.0081 REMARK 3 T13: 0.0540 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 0.6245 L22: 0.8610 REMARK 3 L33: 16.3415 L12: -0.0410 REMARK 3 L13: -0.2994 L23: -0.9105 REMARK 3 S TENSOR REMARK 3 S11: -0.0350 S12: -0.2899 S13: 0.1086 REMARK 3 S21: 0.3454 S22: -0.0288 S23: 0.0819 REMARK 3 S31: -0.9152 S32: -0.1911 S33: 0.0638 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 1 N 41 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7363 4.2258 31.6474 REMARK 3 T TENSOR REMARK 3 T11: 0.1994 T22: 0.1380 REMARK 3 T33: 0.1549 T12: -0.0096 REMARK 3 T13: 0.0559 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.0350 L22: 0.7709 REMARK 3 L33: 28.9376 L12: -0.2407 REMARK 3 L13: 2.6124 L23: -2.3178 REMARK 3 S TENSOR REMARK 3 S11: 0.1323 S12: -0.3338 S13: -0.0292 REMARK 3 S21: 0.3221 S22: 0.1185 S23: 0.1040 REMARK 3 S31: -0.1159 S32: -0.2552 S33: -0.2509 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 42 N 74 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4734 2.5692 27.9361 REMARK 3 T TENSOR REMARK 3 T11: 0.1371 T22: 0.2174 REMARK 3 T33: 0.2508 T12: 0.0003 REMARK 3 T13: 0.0715 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.8484 L22: 1.1610 REMARK 3 L33: 16.3256 L12: -0.0629 REMARK 3 L13: 1.0136 L23: -1.7382 REMARK 3 S TENSOR REMARK 3 S11: -0.0698 S12: -0.3555 S13: 0.0792 REMARK 3 S21: 0.3848 S22: -0.0461 S23: 0.1601 REMARK 3 S31: -0.5769 S32: -0.7660 S33: 0.1159 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 1 O 41 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4790 -4.0966 31.9424 REMARK 3 T TENSOR REMARK 3 T11: 0.1995 T22: 0.1308 REMARK 3 T33: 0.1439 T12: -0.0139 REMARK 3 T13: 0.0359 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.0869 L22: 0.3535 REMARK 3 L33: 22.7457 L12: -0.0528 REMARK 3 L13: 2.2740 L23: 0.1101 REMARK 3 S TENSOR REMARK 3 S11: 0.1386 S12: -0.3454 S13: -0.1043 REMARK 3 S21: 0.2445 S22: 0.0683 S23: 0.0546 REMARK 3 S31: 0.2830 S32: -0.2188 S33: -0.2069 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 42 O 74 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8885 -10.2847 28.1831 REMARK 3 T TENSOR REMARK 3 T11: 0.1684 T22: 0.2076 REMARK 3 T33: 0.2641 T12: -0.0531 REMARK 3 T13: 0.0661 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.8618 L22: 0.8633 REMARK 3 L33: 19.9499 L12: -0.0184 REMARK 3 L13: 1.5186 L23: -0.2555 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: -0.3674 S13: 0.0053 REMARK 3 S21: 0.3617 S22: -0.1112 S23: 0.2051 REMARK 3 S31: -0.1385 S32: -1.1402 S33: 0.1383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3U32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25071 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : 0.11200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.63400 REMARK 200 R SYM FOR SHELL (I) : 0.63400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.5.0109 REMARK 200 STARTING MODEL: PDB ENTRY 3U2Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 68% MPD, 8% PROPOLYENE GLYCOL, 0.3M REMARK 280 NACL, 2MM MGSO4, 50 MM MES PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K, PH 6.1 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z+1/2 REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.27950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.27950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 122.27950 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 122.27950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -416.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L, M, N, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 54.57200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 77 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY K 75 REMARK 465 VAL K 76 REMARK 465 VAL L 76 REMARK 465 VAL M 76 REMARK 465 GLY N 75 REMARK 465 VAL N 76 REMARK 465 GLY O 75 REMARK 465 VAL O 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 FME K 1 CN O1 CG SD CE REMARK 470 GLN K 2 CG CD OE1 NE2 REMARK 470 FME L 1 CG SD CE REMARK 470 GLN L 2 CG CD OE1 NE2 REMARK 470 MET L 67 CG SD CE REMARK 470 FME M 1 SD CE REMARK 470 GLN M 2 CG CD OE1 NE2 REMARK 470 PHE M 64 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET M 67 CG SD CE REMARK 470 FME N 1 CG SD CE REMARK 470 GLN N 2 CG CD OE1 NE2 REMARK 470 LYS N 8 CG CD CE NZ REMARK 470 MET N 67 CG SD CE REMARK 470 FME O 1 SD CE REMARK 470 GLN O 2 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH N 78 O HOH O 86 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCW K 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCW L 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCW M 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCW N 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCW O 159 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XOK RELATED DB: PDB REMARK 900 RELATED ID: 2XQU RELATED DB: PDB REMARK 900 RELATED ID: 2X2V RELATED DB: PDB REMARK 900 RELATED ID: 2WGM RELATED DB: PDB REMARK 900 RELATED ID: 3U2F RELATED DB: PDB REMARK 900 RELATED ID: 3U2Y RELATED DB: PDB DBREF 3U32 K 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 3U32 L 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 3U32 M 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 3U32 N 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 3U32 O 1 76 UNP P61829 ATP9_YEAST 1 76 SEQRES 1 K 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 K 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 K 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 K 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 K 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 K 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 L 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 L 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 L 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 L 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 L 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 L 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 M 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 M 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 M 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 M 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 M 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 M 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 N 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 N 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 N 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 N 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 N 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 N 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 O 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 O 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 O 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 O 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 O 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 O 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL MODRES 3U32 FME K 1 MET N-FORMYLMETHIONINE MODRES 3U32 FME L 1 MET N-FORMYLMETHIONINE MODRES 3U32 FME M 1 MET N-FORMYLMETHIONINE MODRES 3U32 FME N 1 MET N-FORMYLMETHIONINE MODRES 3U32 FME O 1 MET N-FORMYLMETHIONINE HET FME K 1 5 HET FME L 1 7 HET FME M 1 8 HET FME N 1 7 HET FME O 1 8 HET DCW K 159 16 HET DCW L 159 16 HET DCW M 159 16 HET DCW N 159 16 HET DCW O 159 16 HETNAM FME N-FORMYLMETHIONINE HETNAM DCW DICYCLOHEXYLUREA FORMUL 1 FME 5(C6 H11 N O3 S) FORMUL 6 DCW 5(C13 H24 N2 O) FORMUL 11 HOH *55(H2 O) HELIX 1 1 FME K 1 SER K 15 1 15 HELIX 2 2 GLY K 18 ASN K 40 1 23 HELIX 3 3 ILE K 43 PHE K 74 1 32 HELIX 4 4 GLN L 2 SER L 15 1 14 HELIX 5 5 GLY L 18 ASN L 40 1 23 HELIX 6 6 ILE L 43 GLY L 75 1 33 HELIX 7 7 GLN M 2 SER M 15 1 14 HELIX 8 8 GLY M 18 ASN M 40 1 23 HELIX 9 9 ILE M 43 GLY M 75 1 33 HELIX 10 10 GLN N 2 SER N 15 1 14 HELIX 11 11 GLY N 18 ASN N 40 1 23 HELIX 12 12 ILE N 43 PHE N 74 1 32 HELIX 13 13 GLN O 2 SER O 15 1 14 HELIX 14 14 GLY O 18 ASN O 40 1 23 HELIX 15 15 ILE O 43 PHE O 74 1 32 LINK C FME K 1 N GLN K 2 1555 1555 1.34 LINK CD GLU K 59 N1 DCW K 159 1555 1555 1.35 LINK C FME L 1 N GLN L 2 1555 1555 1.34 LINK CD GLU L 59 N1 DCW L 159 1555 1555 1.36 LINK C FME M 1 N GLN M 2 1555 1555 1.33 LINK CD GLU M 59 N1 DCW M 159 1555 1555 1.35 LINK C FME N 1 N GLN N 2 1555 1555 1.34 LINK CD GLU N 59 N1 DCW N 159 1555 1555 1.36 LINK C FME O 1 N GLN O 2 1555 1555 1.34 LINK CD GLU O 59 N1 DCW O 159 1555 1555 1.35 SITE 1 AC1 2 GLU K 59 PHE O 64 SITE 1 AC2 3 PHE K 64 GLU L 59 LEU L 63 SITE 1 AC3 6 ALA L 60 PHE L 64 LEU M 19 GLU M 59 SITE 2 AC3 6 LEU M 63 LEU M 66 SITE 1 AC4 5 ALA M 60 PHE M 64 LEU N 19 PHE N 55 SITE 2 AC4 5 GLU N 59 SITE 1 AC5 4 PHE N 64 LEU O 19 PHE O 55 GLU O 59 CRYST1 54.572 54.572 244.559 90.00 90.00 90.00 P 42 2 2 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018324 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004089 0.00000 HETATM 1 N FME K 1 33.095 14.681 63.750 1.00 70.96 N ANISOU 1 N FME K 1 11920 10039 4999 -203 30 -1192 N HETATM 2 CA FME K 1 34.330 15.206 63.178 1.00 72.17 C ANISOU 2 CA FME K 1 12240 10154 5025 -810 -79 -1323 C HETATM 3 CB FME K 1 35.235 15.757 64.277 1.00 76.08 C ANISOU 3 CB FME K 1 13063 10776 5066 -1381 -158 -1476 C HETATM 4 C FME K 1 35.029 14.123 62.403 1.00 69.27 C ANISOU 4 C FME K 1 11123 10204 4988 -911 -236 -1208 C HETATM 5 O FME K 1 35.300 14.302 61.212 1.00 68.39 O ANISOU 5 O FME K 1 10978 10009 4998 -1036 -247 -1218 O