HEADER PROTEIN BINDING 04-OCT-11 3U34 TITLE CRYSTAL STRUCTURE OF THE GENERAL STRESS FMN/FAD BINDING PROTEIN FROM TITLE 2 THE PHYTOPATHOGEN XANTHOMONAS CITRI COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL STRESS PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI; SOURCE 3 ORGANISM_COMMON: CITRUS CANKER; SOURCE 4 ORGANISM_TAXID: 92829; SOURCE 5 STRAIN: 306; SOURCE 6 GENE: GENERAL STRESS PROTEIN NCBI-GENEID 1156440, XAC2369; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS-S; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS XANTHOMONAS CITRI GENERAL STRESS PROTEIN FMN BINDING PROTEIN FAD KEYWDS 2 BINDING PROTEIN, PNP-OXIDASE LIKE FOLD, FMN FAD, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR E.HILARIO,Y.LI,L.FAN REVDAT 4 13-SEP-23 3U34 1 REMARK REVDAT 3 25-OCT-17 3U34 1 REMARK REVDAT 2 23-JAN-13 3U34 1 JRNL REVDAT 1 27-JUN-12 3U34 0 JRNL AUTH E.HILARIO,Y.LI,D.NIKS,L.FAN JRNL TITL THE STRUCTURE OF A XANTHOMONAS GENERAL STRESS PROTEIN JRNL TITL 2 INVOLVED IN CITRUS CANKER REVEALS ITS FLAVIN-BINDING JRNL TITL 3 PROPERTY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 846 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22751670 JRNL DOI 10.1107/S0907444912014126 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 20050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8073 - 5.3223 0.95 2903 172 0.2198 0.2369 REMARK 3 2 5.3223 - 4.2380 0.96 2876 128 0.1771 0.2069 REMARK 3 3 4.2380 - 3.7063 0.98 2866 133 0.1898 0.2424 REMARK 3 4 3.7063 - 3.3692 0.97 2810 153 0.1991 0.2709 REMARK 3 5 3.3692 - 3.1288 0.93 2673 169 0.2222 0.2723 REMARK 3 6 3.1288 - 2.9449 0.87 2515 135 0.2324 0.3253 REMARK 3 7 2.9449 - 2.7979 0.83 2378 139 0.2751 0.3703 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 40.54 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 20.61290 REMARK 3 B22 (A**2) : -11.45780 REMARK 3 B33 (A**2) : -9.15510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4377 REMARK 3 ANGLE : 1.314 5929 REMARK 3 CHIRALITY : 0.088 648 REMARK 3 PLANARITY : 0.005 762 REMARK 3 DIHEDRAL : 15.964 1539 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -35.9740 6.3758 6.6879 REMARK 3 T TENSOR REMARK 3 T11: 0.2360 T22: 0.1154 REMARK 3 T33: 0.0670 T12: 0.0705 REMARK 3 T13: 0.0420 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.6953 L22: 1.1178 REMARK 3 L33: 1.0002 L12: 0.3489 REMARK 3 L13: -0.3482 L23: -0.5028 REMARK 3 S TENSOR REMARK 3 S11: 0.0969 S12: -0.1251 S13: 0.0544 REMARK 3 S21: 0.2215 S22: -0.0307 S23: 0.0002 REMARK 3 S31: -0.1034 S32: 0.0537 S33: -0.0782 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -33.1042 5.6795 -14.7724 REMARK 3 T TENSOR REMARK 3 T11: 0.3856 T22: 0.1796 REMARK 3 T33: 0.0603 T12: -0.0181 REMARK 3 T13: 0.0585 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.7172 L22: 0.9845 REMARK 3 L33: 2.5696 L12: -0.1194 REMARK 3 L13: -0.1524 L23: 0.6651 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: 0.0592 S13: -0.1095 REMARK 3 S21: -0.2066 S22: 0.1035 S23: -0.0065 REMARK 3 S31: 0.6830 S32: 0.0551 S33: -0.0759 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -21.3266 31.9640 1.7165 REMARK 3 T TENSOR REMARK 3 T11: 0.0553 T22: 0.0846 REMARK 3 T33: 0.1944 T12: 0.0515 REMARK 3 T13: -0.0170 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.6607 L22: 1.7480 REMARK 3 L33: 0.6223 L12: -0.1154 REMARK 3 L13: 0.5140 L23: 0.2068 REMARK 3 S TENSOR REMARK 3 S11: -0.1008 S12: 0.0136 S13: 0.0460 REMARK 3 S21: 0.1956 S22: 0.0652 S23: -0.3967 REMARK 3 S31: 0.0468 S32: -0.0032 S33: 0.0189 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -38.8039 34.0239 -11.3230 REMARK 3 T TENSOR REMARK 3 T11: 0.0707 T22: 0.1649 REMARK 3 T33: 0.2720 T12: -0.0193 REMARK 3 T13: -0.0346 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.6274 L22: 2.1804 REMARK 3 L33: 0.1700 L12: -0.4112 REMARK 3 L13: -0.2107 L23: -0.3620 REMARK 3 S TENSOR REMARK 3 S11: 0.0879 S12: 0.2792 S13: 0.0185 REMARK 3 S21: -0.1554 S22: -0.0887 S23: 0.5613 REMARK 3 S31: 0.0429 S32: -0.0422 S33: -0.0155 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 24:152 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 24:152 ) REMARK 3 ATOM PAIRS NUMBER : 973 REMARK 3 RMSD : 0.135 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 24:152 ) REMARK 3 SELECTION : CHAIN C AND (RESSEQ 24:152 ) REMARK 3 ATOM PAIRS NUMBER : 983 REMARK 3 RMSD : 0.194 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 24:152 ) REMARK 3 SELECTION : CHAIN D AND (RESSEQ 24:152 ) REMARK 3 ATOM PAIRS NUMBER : 979 REMARK 3 RMSD : 0.161 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541870 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DMB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION AT 25 MG/ML IN REMARK 280 0.1M HEPES BUFFER, PH 7.5, CONTAINING 42% PEG200, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 60.15400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.06750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.15400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.06750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BASED ON THE SIZE EXCLUSION CHROMATOGRAPHY RESULTS THE PURE REMARK 300 RECOMBINANT PROTEIN EXIST AS AN EQUILIBRIUM OF DIMERS AND TETRAMERS REMARK 300 IN SOLUTION. HOWEVER, THE AMOUNT OF DIMERIC FORM IS PREDOMINANT REMARK 300 WHEN COMPARED WITH THE TETRAMERIC FORM REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ARG A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 HIS A 10 REMARK 465 PRO A 11 REMARK 465 ARG A 12 REMARK 465 THR A 13 REMARK 465 THR A 14 REMARK 465 ARG A 15 REMARK 465 MET A 16 REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 ILE A 19 REMARK 465 GLU A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 ASP A 23 REMARK 465 VAL A 166 REMARK 465 ASP A 167 REMARK 465 PRO A 168 REMARK 465 LYS A 169 REMARK 465 LYS A 170 REMARK 465 ASP A 171 REMARK 465 TYR A 172 REMARK 465 GLN A 173 REMARK 465 ASP A 174 REMARK 465 LYS A 175 REMARK 465 VAL A 176 REMARK 465 ALA A 177 REMARK 465 ASP A 178 REMARK 465 VAL A 179 REMARK 465 PRO A 180 REMARK 465 LEU A 181 REMARK 465 ARG A 182 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ARG B 3 REMARK 465 ALA B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 ARG B 7 REMARK 465 LEU B 8 REMARK 465 ALA B 9 REMARK 465 HIS B 10 REMARK 465 PRO B 11 REMARK 465 ARG B 12 REMARK 465 THR B 13 REMARK 465 THR B 14 REMARK 465 ARG B 15 REMARK 465 MET B 16 REMARK 465 SER B 17 REMARK 465 GLY B 18 REMARK 465 ILE B 19 REMARK 465 GLU B 20 REMARK 465 MET B 21 REMARK 465 ALA B 22 REMARK 465 ASP B 23 REMARK 465 GLY B 165 REMARK 465 VAL B 166 REMARK 465 ASP B 167 REMARK 465 PRO B 168 REMARK 465 LYS B 169 REMARK 465 LYS B 170 REMARK 465 ASP B 171 REMARK 465 TYR B 172 REMARK 465 GLN B 173 REMARK 465 ASP B 174 REMARK 465 LYS B 175 REMARK 465 VAL B 176 REMARK 465 ALA B 177 REMARK 465 ASP B 178 REMARK 465 VAL B 179 REMARK 465 PRO B 180 REMARK 465 LEU B 181 REMARK 465 ARG B 182 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 ARG C 3 REMARK 465 ALA C 4 REMARK 465 SER C 5 REMARK 465 SER C 6 REMARK 465 ARG C 7 REMARK 465 LEU C 8 REMARK 465 ALA C 9 REMARK 465 HIS C 10 REMARK 465 PRO C 11 REMARK 465 ARG C 12 REMARK 465 THR C 13 REMARK 465 THR C 14 REMARK 465 ARG C 15 REMARK 465 MET C 16 REMARK 465 SER C 17 REMARK 465 GLY C 18 REMARK 465 ILE C 19 REMARK 465 GLU C 20 REMARK 465 MET C 21 REMARK 465 ALA C 22 REMARK 465 GLY C 165 REMARK 465 VAL C 166 REMARK 465 ASP C 167 REMARK 465 PRO C 168 REMARK 465 LYS C 169 REMARK 465 LYS C 170 REMARK 465 ASP C 171 REMARK 465 TYR C 172 REMARK 465 GLN C 173 REMARK 465 ASP C 174 REMARK 465 LYS C 175 REMARK 465 VAL C 176 REMARK 465 ALA C 177 REMARK 465 ASP C 178 REMARK 465 VAL C 179 REMARK 465 PRO C 180 REMARK 465 LEU C 181 REMARK 465 ARG C 182 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 ARG D 3 REMARK 465 ALA D 4 REMARK 465 SER D 5 REMARK 465 SER D 6 REMARK 465 ARG D 7 REMARK 465 LEU D 8 REMARK 465 ALA D 9 REMARK 465 HIS D 10 REMARK 465 PRO D 11 REMARK 465 ARG D 12 REMARK 465 THR D 13 REMARK 465 THR D 14 REMARK 465 ARG D 15 REMARK 465 MET D 16 REMARK 465 SER D 17 REMARK 465 GLY D 18 REMARK 465 ILE D 19 REMARK 465 GLU D 20 REMARK 465 MET D 21 REMARK 465 ALA D 22 REMARK 465 ASP D 23 REMARK 465 GLY D 165 REMARK 465 VAL D 166 REMARK 465 ASP D 167 REMARK 465 PRO D 168 REMARK 465 LYS D 169 REMARK 465 LYS D 170 REMARK 465 ASP D 171 REMARK 465 TYR D 172 REMARK 465 GLN D 173 REMARK 465 ASP D 174 REMARK 465 LYS D 175 REMARK 465 VAL D 176 REMARK 465 ALA D 177 REMARK 465 ASP D 178 REMARK 465 VAL D 179 REMARK 465 PRO D 180 REMARK 465 LEU D 181 REMARK 465 ARG D 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 24 OG1 CG2 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LEU A 78 CG CD1 CD2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 THR A 133 OG1 CG2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 THR B 24 OG1 CG2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 GLU B 26 CG CD OE1 OE2 REMARK 470 LEU B 78 CG CD1 CD2 REMARK 470 GLN B 84 CG CD OE1 NE2 REMARK 470 ARG B 86 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 129 CG CD OE1 OE2 REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 ALA B 158 CB REMARK 470 ASP C 23 CG OD1 OD2 REMARK 470 LYS C 25 CG CD CE NZ REMARK 470 GLU C 29 CG CD OE1 OE2 REMARK 470 ASP C 63 CG OD1 OD2 REMARK 470 SER C 73 OG REMARK 470 GLU C 129 CG CD OE1 OE2 REMARK 470 GLU C 153 CG CD OE1 OE2 REMARK 470 SER C 154 OG REMARK 470 SER C 155 OG REMARK 470 ILE C 160 CG1 CG2 CD1 REMARK 470 LYS C 161 CG CD CE NZ REMARK 470 LEU C 163 CG CD1 CD2 REMARK 470 LYS D 25 CG CD CE NZ REMARK 470 GLU D 26 CG CD OE1 OE2 REMARK 470 GLU D 29 CG CD OE1 OE2 REMARK 470 GLN D 84 CG CD OE1 NE2 REMARK 470 GLU D 129 CG CD OE1 OE2 REMARK 470 GLU D 153 CG CD OE1 OE2 REMARK 470 LEU D 163 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN D 152 O HOH D 196 1.83 REMARK 500 O SER B 104 O HOH B 190 1.88 REMARK 500 NE ARG A 87 O HOH A 197 1.90 REMARK 500 ND1 HIS D 97 O HOH D 190 1.94 REMARK 500 O HOH D 195 O HOH D 197 1.94 REMARK 500 OD2 ASP D 50 O HOH D 185 1.96 REMARK 500 OD2 ASP A 145 O HOH A 200 2.04 REMARK 500 N ASP B 145 O HOH B 190 2.06 REMARK 500 C ASN D 152 O HOH D 196 2.07 REMARK 500 O HOH B 188 O HOH D 187 2.09 REMARK 500 NH2 ARG C 87 OG SER C 104 2.09 REMARK 500 ND1 HIS C 97 O HOH C 184 2.12 REMARK 500 O HOH D 183 O HOH D 191 2.17 REMARK 500 NH2 ARG B 87 OG SER B 104 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 46 CB - CA - C ANGL. DEV. = -14.3 DEGREES REMARK 500 ASP B 46 CB - CG - OD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP B 46 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP C 46 CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG C 87 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP D 46 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 39 -57.63 72.45 REMARK 500 THR A 72 -162.46 -160.36 REMARK 500 ASP A 110 65.47 -154.85 REMARK 500 ARG B 39 -46.63 69.99 REMARK 500 LYS B 95 16.57 -68.76 REMARK 500 ASP B 110 65.86 -152.78 REMARK 500 ASN B 152 75.70 -116.46 REMARK 500 ALA B 158 131.36 -35.62 REMARK 500 ARG C 39 -48.94 71.07 REMARK 500 ASP C 110 66.51 -153.68 REMARK 500 ARG D 39 -51.55 72.08 REMARK 500 ASP D 110 66.98 -154.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE C 183 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 183 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DMB RELATED DB: PDB REMARK 900 PUTATIVE GENERAL STRESS PROTEIN 26 WITH A PNP-OXIDASE LIKE FOLD REMARK 900 RELATED ID: 1FLM RELATED DB: PDB REMARK 900 FMN-BINDING PROTEIN REMARK 900 RELATED ID: 2OU5 RELATED DB: PDB REMARK 900 PYRIDOXAMINE 5'-PHOSPHATE OXIDASE-RELATED, FMN-BINDING PROTEIN REMARK 900 RELATED ID: 2I02 RELATED DB: PDB REMARK 900 GENERAL STRESS PROTEIN OF COG3871 COMPLEXED WITH FMN REMARK 900 RELATED ID: 3U35 RELATED DB: PDB DBREF 3U34 A 1 182 UNP Q8PK08 Q8PK08_XANAC 1 182 DBREF 3U34 B 1 182 UNP Q8PK08 Q8PK08_XANAC 1 182 DBREF 3U34 C 1 182 UNP Q8PK08 Q8PK08_XANAC 1 182 DBREF 3U34 D 1 182 UNP Q8PK08 Q8PK08_XANAC 1 182 SEQRES 1 A 182 MET VAL ARG ALA SER SER ARG LEU ALA HIS PRO ARG THR SEQRES 2 A 182 THR ARG MET SER GLY ILE GLU MET ALA ASP THR LYS GLU SEQRES 3 A 182 LEU GLN GLU LYS PHE TRP LYS ALA LEU LYS SER ASP ARG SEQRES 4 A 182 THR VAL MET LEU GLY LEU ASP GLY VAL GLU ASP GLY HIS SEQRES 5 A 182 ALA ARG PRO MET THR ALA GLN ILE GLU GLY ASP SER GLY SEQRES 6 A 182 GLY PRO ILE TRP PHE PHE THR SER LYS ASP ASN ALA LEU SEQRES 7 A 182 ILE ALA MET LEU GLY GLN GLY ARG ARG VAL ILE GLY ALA SEQRES 8 A 182 PHE SER SER LYS GLY HIS ASP LEU PHE ALA SER ILE SER SEQRES 9 A 182 GLY SER LEU ARG GLU ASP THR ASP PRO ALA MET VAL ASP SEQRES 10 A 182 ARG LEU TRP ASN PRO TYR VAL ALA ALA TRP TYR GLU GLY SEQRES 11 A 182 GLY LYS THR ASP PRO ASN LEU ALA LEU LEU ARG LEU ASP SEQRES 12 A 182 ALA ASP HIS ALA GLN ILE TRP LEU ASN GLU SER SER LEU SEQRES 13 A 182 LEU ALA GLY ILE LYS VAL LEU LEU GLY VAL ASP PRO LYS SEQRES 14 A 182 LYS ASP TYR GLN ASP LYS VAL ALA ASP VAL PRO LEU ARG SEQRES 1 B 182 MET VAL ARG ALA SER SER ARG LEU ALA HIS PRO ARG THR SEQRES 2 B 182 THR ARG MET SER GLY ILE GLU MET ALA ASP THR LYS GLU SEQRES 3 B 182 LEU GLN GLU LYS PHE TRP LYS ALA LEU LYS SER ASP ARG SEQRES 4 B 182 THR VAL MET LEU GLY LEU ASP GLY VAL GLU ASP GLY HIS SEQRES 5 B 182 ALA ARG PRO MET THR ALA GLN ILE GLU GLY ASP SER GLY SEQRES 6 B 182 GLY PRO ILE TRP PHE PHE THR SER LYS ASP ASN ALA LEU SEQRES 7 B 182 ILE ALA MET LEU GLY GLN GLY ARG ARG VAL ILE GLY ALA SEQRES 8 B 182 PHE SER SER LYS GLY HIS ASP LEU PHE ALA SER ILE SER SEQRES 9 B 182 GLY SER LEU ARG GLU ASP THR ASP PRO ALA MET VAL ASP SEQRES 10 B 182 ARG LEU TRP ASN PRO TYR VAL ALA ALA TRP TYR GLU GLY SEQRES 11 B 182 GLY LYS THR ASP PRO ASN LEU ALA LEU LEU ARG LEU ASP SEQRES 12 B 182 ALA ASP HIS ALA GLN ILE TRP LEU ASN GLU SER SER LEU SEQRES 13 B 182 LEU ALA GLY ILE LYS VAL LEU LEU GLY VAL ASP PRO LYS SEQRES 14 B 182 LYS ASP TYR GLN ASP LYS VAL ALA ASP VAL PRO LEU ARG SEQRES 1 C 182 MET VAL ARG ALA SER SER ARG LEU ALA HIS PRO ARG THR SEQRES 2 C 182 THR ARG MET SER GLY ILE GLU MET ALA ASP THR LYS GLU SEQRES 3 C 182 LEU GLN GLU LYS PHE TRP LYS ALA LEU LYS SER ASP ARG SEQRES 4 C 182 THR VAL MET LEU GLY LEU ASP GLY VAL GLU ASP GLY HIS SEQRES 5 C 182 ALA ARG PRO MET THR ALA GLN ILE GLU GLY ASP SER GLY SEQRES 6 C 182 GLY PRO ILE TRP PHE PHE THR SER LYS ASP ASN ALA LEU SEQRES 7 C 182 ILE ALA MET LEU GLY GLN GLY ARG ARG VAL ILE GLY ALA SEQRES 8 C 182 PHE SER SER LYS GLY HIS ASP LEU PHE ALA SER ILE SER SEQRES 9 C 182 GLY SER LEU ARG GLU ASP THR ASP PRO ALA MET VAL ASP SEQRES 10 C 182 ARG LEU TRP ASN PRO TYR VAL ALA ALA TRP TYR GLU GLY SEQRES 11 C 182 GLY LYS THR ASP PRO ASN LEU ALA LEU LEU ARG LEU ASP SEQRES 12 C 182 ALA ASP HIS ALA GLN ILE TRP LEU ASN GLU SER SER LEU SEQRES 13 C 182 LEU ALA GLY ILE LYS VAL LEU LEU GLY VAL ASP PRO LYS SEQRES 14 C 182 LYS ASP TYR GLN ASP LYS VAL ALA ASP VAL PRO LEU ARG SEQRES 1 D 182 MET VAL ARG ALA SER SER ARG LEU ALA HIS PRO ARG THR SEQRES 2 D 182 THR ARG MET SER GLY ILE GLU MET ALA ASP THR LYS GLU SEQRES 3 D 182 LEU GLN GLU LYS PHE TRP LYS ALA LEU LYS SER ASP ARG SEQRES 4 D 182 THR VAL MET LEU GLY LEU ASP GLY VAL GLU ASP GLY HIS SEQRES 5 D 182 ALA ARG PRO MET THR ALA GLN ILE GLU GLY ASP SER GLY SEQRES 6 D 182 GLY PRO ILE TRP PHE PHE THR SER LYS ASP ASN ALA LEU SEQRES 7 D 182 ILE ALA MET LEU GLY GLN GLY ARG ARG VAL ILE GLY ALA SEQRES 8 D 182 PHE SER SER LYS GLY HIS ASP LEU PHE ALA SER ILE SER SEQRES 9 D 182 GLY SER LEU ARG GLU ASP THR ASP PRO ALA MET VAL ASP SEQRES 10 D 182 ARG LEU TRP ASN PRO TYR VAL ALA ALA TRP TYR GLU GLY SEQRES 11 D 182 GLY LYS THR ASP PRO ASN LEU ALA LEU LEU ARG LEU ASP SEQRES 12 D 182 ALA ASP HIS ALA GLN ILE TRP LEU ASN GLU SER SER LEU SEQRES 13 D 182 LEU ALA GLY ILE LYS VAL LEU LEU GLY VAL ASP PRO LYS SEQRES 14 D 182 LYS ASP TYR GLN ASP LYS VAL ALA ASP VAL PRO LEU ARG HET PGE A 183 10 HET PGE C 183 10 HETNAM PGE TRIETHYLENE GLYCOL FORMUL 5 PGE 2(C6 H14 O4) FORMUL 7 HOH *47(H2 O) HELIX 1 1 THR A 24 ARG A 39 1 16 HELIX 2 2 VAL A 48 GLY A 51 5 4 HELIX 3 3 ASN A 76 MET A 81 1 6 HELIX 4 4 ASP A 112 TRP A 120 1 9 HELIX 5 5 ASN A 121 ALA A 126 1 6 HELIX 6 6 GLY A 130 ASP A 134 5 5 HELIX 7 7 LYS B 25 ARG B 39 1 15 HELIX 8 8 VAL B 48 GLY B 51 5 4 HELIX 9 9 ASN B 76 MET B 81 1 6 HELIX 10 10 ASP B 112 TRP B 120 1 9 HELIX 11 11 ASN B 121 ALA B 126 1 6 HELIX 12 12 GLY B 130 ASP B 134 5 5 HELIX 13 13 THR C 24 ARG C 39 1 16 HELIX 14 14 VAL C 48 GLY C 51 5 4 HELIX 15 15 ASN C 76 MET C 81 1 6 HELIX 16 16 ASP C 112 TRP C 120 1 9 HELIX 17 17 ASN C 121 ALA C 126 1 6 HELIX 18 18 GLY C 130 ASP C 134 5 5 HELIX 19 19 LYS D 25 ARG D 39 1 15 HELIX 20 20 VAL D 48 GLY D 51 5 4 HELIX 21 21 ASN D 76 MET D 81 1 6 HELIX 22 22 ASP D 112 TRP D 120 1 9 HELIX 23 23 ASN D 121 ALA D 126 1 6 HELIX 24 24 GLY D 130 ASP D 134 5 5 CISPEP 1 GLY A 66 PRO A 67 0 5.22 CISPEP 2 GLY B 66 PRO B 67 0 4.26 CISPEP 3 GLY C 66 PRO C 67 0 2.65 CISPEP 4 GLY D 66 PRO D 67 0 3.73 SITE 1 AC1 10 THR C 40 MET C 42 ALA C 91 PHE C 92 SITE 2 AC1 10 SER C 93 HIS C 97 THR D 40 ALA D 91 SITE 3 AC1 10 PHE D 92 SER D 93 SITE 1 AC2 13 THR A 40 MET A 42 ALA A 91 PHE A 92 SITE 2 AC2 13 SER A 93 HIS A 97 THR B 40 MET B 42 SITE 3 AC2 13 ALA B 91 PHE B 92 SER B 93 HIS B 97 SITE 4 AC2 13 PHE B 100 CRYST1 120.308 122.135 57.734 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008312 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017321 0.00000