HEADER PROTEIN BINDING 06-OCT-11 3U3L TITLE CRYSTAL STRUCTURE OF THE SELENOMETHIONINE DERIVATIVE OF TABLYSIN-15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TABLYSIN 15; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: UNP RESIDUES 24-255; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TABANUS YAO; SOURCE 3 ORGANISM_TAXID: 485572; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSE; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS CAP DOMAIN, ALPHAVBETA3 INTEGRIN, SALIVARY GLAND, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.F.ANDERSEN,X.XU,J.M.RIBEIRO REVDAT 4 08-NOV-17 3U3L 1 REMARK REVDAT 3 17-OCT-12 3U3L 1 JRNL REVDAT 2 23-MAY-12 3U3L 1 JRNL REVDAT 1 15-FEB-12 3U3L 0 JRNL AUTH X.XU,I.M.FRANCISCHETTI,R.LAI,J.M.RIBEIRO,J.F.ANDERSEN JRNL TITL STRUCTURE OF PROTEIN HAVING INHIBITORY DISINTEGRIN AND JRNL TITL 2 LEUKOTRIENE SCAVENGING FUNCTIONS CONTAINED IN SINGLE DOMAIN. JRNL REF J.BIOL.CHEM. V. 287 10967 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22311975 JRNL DOI 10.1074/JBC.M112.340471 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7411 - 3.5909 0.99 2860 145 0.1734 0.1926 REMARK 3 2 3.5909 - 2.8510 1.00 2726 160 0.1880 0.2145 REMARK 3 3 2.8510 - 2.4909 1.00 2739 150 0.2008 0.2364 REMARK 3 4 2.4909 - 2.2632 1.00 2721 126 0.1833 0.2174 REMARK 3 5 2.2632 - 2.1011 1.00 2685 143 0.1858 0.1871 REMARK 3 6 2.1011 - 1.9772 1.00 2688 144 0.1872 0.2013 REMARK 3 7 1.9772 - 1.8782 1.00 2641 160 0.1802 0.2264 REMARK 3 8 1.8782 - 1.7965 1.00 2709 167 0.1780 0.1950 REMARK 3 9 1.7965 - 1.7273 1.00 2680 117 0.1743 0.2112 REMARK 3 10 1.7273 - 1.6677 1.00 2660 149 0.1851 0.2214 REMARK 3 11 1.6677 - 1.6156 1.00 2687 129 0.1955 0.2379 REMARK 3 12 1.6156 - 1.5694 0.99 2655 138 0.2151 0.2527 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 42.26 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52510 REMARK 3 B22 (A**2) : -0.52510 REMARK 3 B33 (A**2) : 1.05030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1919 REMARK 3 ANGLE : 1.035 2608 REMARK 3 CHIRALITY : 0.070 270 REMARK 3 PLANARITY : 0.004 341 REMARK 3 DIHEDRAL : 14.788 742 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 1:20) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0660 10.9368 -10.6774 REMARK 3 T TENSOR REMARK 3 T11: 0.0944 T22: 0.0880 REMARK 3 T33: 0.0610 T12: -0.0018 REMARK 3 T13: 0.0026 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 3.3169 L22: 4.1715 REMARK 3 L33: 3.9272 L12: -0.5793 REMARK 3 L13: -0.5822 L23: 1.1876 REMARK 3 S TENSOR REMARK 3 S11: 0.0160 S12: 0.0970 S13: 0.1952 REMARK 3 S21: -0.2194 S22: -0.0279 S23: -0.1135 REMARK 3 S31: -0.4570 S32: 0.2297 S33: 0.0224 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 21:36) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1066 15.4517 10.0321 REMARK 3 T TENSOR REMARK 3 T11: 0.1167 T22: 0.1561 REMARK 3 T33: 0.1450 T12: 0.0504 REMARK 3 T13: -0.0096 T23: -0.0573 REMARK 3 L TENSOR REMARK 3 L11: 3.4393 L22: 2.9002 REMARK 3 L33: 2.9004 L12: -2.1257 REMARK 3 L13: 1.1432 L23: -1.4941 REMARK 3 S TENSOR REMARK 3 S11: -0.1366 S12: -0.3617 S13: 0.1524 REMARK 3 S21: 0.1822 S22: 0.3633 S23: -0.0906 REMARK 3 S31: -0.2076 S32: -0.2242 S33: -0.2053 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 37:73) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8624 -9.4548 9.0003 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1538 REMARK 3 T33: 0.0976 T12: 0.0390 REMARK 3 T13: -0.0598 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 2.2093 L22: 3.4278 REMARK 3 L33: 2.0641 L12: -0.4434 REMARK 3 L13: 0.1385 L23: -0.0403 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: -0.2958 S13: -0.1433 REMARK 3 S21: 0.2018 S22: 0.1175 S23: -0.0895 REMARK 3 S31: 0.4571 S32: 0.0454 S33: -0.0571 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 74:103) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8488 5.8155 -2.6625 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.0581 REMARK 3 T33: 0.0545 T12: -0.0109 REMARK 3 T13: 0.0075 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 3.0846 L22: 2.7950 REMARK 3 L33: 3.8279 L12: -2.2183 REMARK 3 L13: -0.8819 L23: 1.9613 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.0988 S13: 0.0152 REMARK 3 S21: -0.0528 S22: -0.0671 S23: 0.0469 REMARK 3 S31: -0.1103 S32: -0.1124 S33: 0.0306 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 104:117) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7650 4.2697 14.1987 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.2595 REMARK 3 T33: 0.0010 T12: 0.0869 REMARK 3 T13: 0.0422 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.3382 L22: 1.3049 REMARK 3 L33: 2.3828 L12: -0.4521 REMARK 3 L13: -0.6765 L23: 0.9121 REMARK 3 S TENSOR REMARK 3 S11: -0.1404 S12: -0.4374 S13: 0.0530 REMARK 3 S21: 0.4019 S22: 0.1969 S23: 0.0552 REMARK 3 S31: -0.0900 S32: -0.3178 S33: 0.0251 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 118:134) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7400 -5.2369 15.9691 REMARK 3 T TENSOR REMARK 3 T11: 0.3352 T22: 0.3603 REMARK 3 T33: 0.1219 T12: 0.0623 REMARK 3 T13: 0.0822 T23: 0.1152 REMARK 3 L TENSOR REMARK 3 L11: 3.2012 L22: 5.3100 REMARK 3 L33: 2.3639 L12: 1.9282 REMARK 3 L13: 0.6910 L23: 2.0355 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.5462 S13: -0.4317 REMARK 3 S21: 0.8033 S22: -0.0840 S23: 0.0894 REMARK 3 S31: 0.5734 S32: -0.5078 S33: 0.0670 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 135:153) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5631 -17.2003 1.9220 REMARK 3 T TENSOR REMARK 3 T11: 0.3477 T22: 0.0744 REMARK 3 T33: 0.6700 T12: -0.2375 REMARK 3 T13: -0.2231 T23: 0.0931 REMARK 3 L TENSOR REMARK 3 L11: 1.1316 L22: 2.4605 REMARK 3 L33: 1.8643 L12: 0.4999 REMARK 3 L13: -0.1014 L23: 0.4571 REMARK 3 S TENSOR REMARK 3 S11: 0.0993 S12: 0.0100 S13: -0.5980 REMARK 3 S21: 0.1001 S22: -0.0258 S23: 0.7861 REMARK 3 S31: 0.5174 S32: -0.3702 S33: 0.1219 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 154:188) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9719 1.1726 7.1534 REMARK 3 T TENSOR REMARK 3 T11: 0.0702 T22: 0.1305 REMARK 3 T33: 0.0300 T12: 0.0255 REMARK 3 T13: 0.0045 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.5392 L22: 2.0371 REMARK 3 L33: 1.1620 L12: -1.4938 REMARK 3 L13: -0.3444 L23: 0.6229 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: -0.2586 S13: -0.0274 REMARK 3 S21: 0.1016 S22: 0.1174 S23: 0.0166 REMARK 3 S31: 0.0279 S32: -0.1765 S33: 0.0113 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 189:208) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8706 -17.1063 -2.3561 REMARK 3 T TENSOR REMARK 3 T11: 0.3539 T22: 0.1170 REMARK 3 T33: 0.2001 T12: 0.0583 REMARK 3 T13: -0.1312 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 1.7029 L22: 1.0968 REMARK 3 L33: 0.9907 L12: -0.7174 REMARK 3 L13: 0.2793 L23: -0.1374 REMARK 3 S TENSOR REMARK 3 S11: 0.3961 S12: 0.2119 S13: -0.6528 REMARK 3 S21: -0.1382 S22: -0.1185 S23: 0.2314 REMARK 3 S31: 0.6586 S32: 0.1435 S33: -0.1859 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 209:232) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7028 -12.6346 0.9924 REMARK 3 T TENSOR REMARK 3 T11: 0.2013 T22: 0.2083 REMARK 3 T33: 0.1841 T12: 0.0570 REMARK 3 T13: -0.0653 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.2007 L22: 1.0939 REMARK 3 L33: 3.7013 L12: -1.0378 REMARK 3 L13: 1.3550 L23: -1.8072 REMARK 3 S TENSOR REMARK 3 S11: 0.0972 S12: 0.1568 S13: -0.0523 REMARK 3 S21: -0.0180 S22: -0.2497 S23: -0.4223 REMARK 3 S31: 0.3494 S32: 0.6071 S33: 0.1063 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34232 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 15.90 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 0.32700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % PEG 6000, 100 MM CITRATE, 13 MM REMARK 280 PRASEODYMIUM (III) ACETATE, PH 5.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.73633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.47267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.47267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.73633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 342 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE C 0 REMARK 465 PRO C 149 REMARK 465 ASN C 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 66 63.67 -159.13 REMARK 500 ARG C 95 22.43 -144.01 REMARK 500 VAL C 153 -1.37 -143.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PR C 234 PR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 34 OE2 REMARK 620 2 HOH C 381 O 79.9 REMARK 620 3 CIT C 236 O7 66.4 124.2 REMARK 620 4 CIT C 235 O4 80.8 69.6 138.9 REMARK 620 5 HOH C 371 O 140.8 61.0 138.3 82.8 REMARK 620 6 CIT C 236 O2 133.1 132.4 67.0 136.5 81.2 REMARK 620 7 CIT C 235 O7 134.7 110.6 124.9 64.1 64.5 72.6 REMARK 620 8 CIT C 236 O6 90.0 72.6 64.8 142.0 81.6 74.2 135.2 REMARK 620 9 CIT C 235 O6 87.1 147.0 76.0 78.5 123.8 77.6 59.7 138.1 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM C 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PR C 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT C 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT C 236 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U3U RELATED DB: PDB REMARK 900 RELATED ID: 3U3N RELATED DB: PDB DBREF 3U3L C 1 232 UNP F8QQG5 F8QQG5_9DIPT 24 255 SEQADV 3U3L MSE C 0 UNP F8QQG5 EXPRESSION TAG SEQADV 3U3L GLU C 142 UNP F8QQG5 GLY 165 CONFLICT SEQADV 3U3L GLU C 175 UNP F8QQG5 GLN 198 CONFLICT SEQADV 3U3L SER C 221 UNP F8QQG5 PRO 244 CONFLICT SEQRES 1 C 233 MSE VAL ASN TYR CYS ARG LEU PRO CYS ARG GLY ASP ASN SEQRES 2 C 233 TYR HIS VAL GLY CYS GLY GLU PRO ALA TYR ALA GLN GLU SEQRES 3 C 233 CYS GLY GLN SER PRO ARG THR ARG GLU LEU LEU LYS GLU SEQRES 4 C 233 HIS ARG ASN GLU ILE LEU SER LYS ILE ASN ASP VAL ARG SEQRES 5 C 233 ASP HIS VAL ALA LYS GLY SER TRP GLY LEU PRO VAL ALA SEQRES 6 C 233 ALA ARG MSE LYS VAL VAL VAL TRP ASP ALA GLU LEU ALA SEQRES 7 C 233 GLY LEU ALA LYS ARG HIS THR LYS GLY CYS VAL GLY GLU SEQRES 8 C 233 THR HIS ALA CYS ARG ASN THR GLU ARG PHE TRP LEU PRO SEQRES 9 C 233 GLY GLN LEU ASN PHE LYS TYR SER GLY ASP LYS LEU PRO SEQRES 10 C 233 ARG ILE LYS GLU LEU ILE ASP ASP ALA VAL LYS LYS GLY SEQRES 11 C 233 HIS LEU GLN LYS HIS ASN ILE THR ARG GLU ILE ILE GLU SEQRES 12 C 233 ASN TYR ARG GLU ASN GLY PRO ASN GLY ASP VAL LYS GLU SEQRES 13 C 233 LEU ALA LEU ALA ILE SER ASP ARG VAL THR ALA VAL GLY SEQRES 14 C 233 CYS GLY LEU THR THR TRP GLU ASP GLY ALA LYS ALA ARG SEQRES 15 C 233 ALA LEU LEU THR CYS ASN PHE SER SER GLN ASN THR ARG SEQRES 16 C 233 GLY ARG PRO VAL TYR LYS ILE GLY ASN SER PRO GLY GLU SEQRES 17 C 233 LYS CYS ILE GLU LYS ASP GLU THR TYR LYS ASN LEU CYS SEQRES 18 C 233 SER ALA THR GLU PRO ILE ASP PRO ASN LYS SER ASN MODRES 3U3L MSE C 67 MET SELENOMETHIONINE HET MSE C 67 8 HET PLM C 233 18 HET PR C 234 1 HET CIT C 235 13 HET CIT C 236 13 HETNAM MSE SELENOMETHIONINE HETNAM PLM PALMITIC ACID HETNAM PR PRASEODYMIUM ION HETNAM CIT CITRIC ACID FORMUL 1 MSE C5 H11 N O2 SE FORMUL 2 PLM C16 H32 O2 FORMUL 3 PR PR 3+ FORMUL 4 CIT 2(C6 H8 O7) FORMUL 6 HOH *202(H2 O) HELIX 1 1 ASN C 2 LEU C 6 5 5 HELIX 2 2 ALA C 23 GLY C 27 5 5 HELIX 3 3 LEU C 36 LYS C 56 1 21 HELIX 4 4 ASP C 73 LYS C 85 1 13 HELIX 5 5 ARG C 117 LEU C 131 1 15 HELIX 6 6 GLN C 132 ASN C 135 5 4 HELIX 7 7 THR C 137 ASN C 143 1 7 HELIX 8 8 VAL C 153 ILE C 160 1 8 SHEET 1 A 3 ARG C 31 THR C 32 0 SHEET 2 A 3 ALA C 166 ASP C 176 -1 O THR C 173 N ARG C 31 SHEET 3 A 3 VAL C 71 TRP C 72 1 N VAL C 71 O VAL C 167 SHEET 1 B 4 ARG C 31 THR C 32 0 SHEET 2 B 4 ALA C 166 ASP C 176 -1 O THR C 173 N ARG C 31 SHEET 3 B 4 LYS C 179 PHE C 188 -1 O ARG C 181 N TRP C 174 SHEET 4 B 4 GLY C 104 GLY C 112 -1 N GLY C 112 O ALA C 180 SSBOND 1 CYS C 4 CYS C 17 1555 1555 2.05 SSBOND 2 CYS C 8 CYS C 94 1555 1555 2.03 SSBOND 3 CYS C 26 CYS C 87 1555 1555 2.04 SSBOND 4 CYS C 169 CYS C 186 1555 1555 2.07 SSBOND 5 CYS C 209 CYS C 220 1555 1555 2.03 LINK C ARG C 66 N MSE C 67 1555 1555 1.33 LINK C MSE C 67 N LYS C 68 1555 1555 1.33 LINK OE2 GLU C 34 PR PR C 234 1555 1555 2.34 LINK PR PR C 234 O HOH C 381 1555 1555 2.36 LINK PR PR C 234 O7 CIT C 236 1555 1555 2.37 LINK PR PR C 234 O4 CIT C 235 1555 1555 2.39 LINK PR PR C 234 O HOH C 371 1555 1555 2.43 LINK PR PR C 234 O2 CIT C 236 1555 1555 2.43 LINK PR PR C 234 O7 CIT C 235 1555 1555 2.62 LINK PR PR C 234 O6 CIT C 236 1555 1555 2.69 LINK PR PR C 234 O6 CIT C 235 1555 1555 2.77 SITE 1 AC1 2 LYS C 46 HIS C 53 SITE 1 AC2 5 GLU C 34 CIT C 235 CIT C 236 HOH C 371 SITE 2 AC2 5 HOH C 381 SITE 1 AC3 12 GLU C 34 LEU C 36 LYS C 37 ARG C 40 SITE 2 AC3 12 LYS C 217 PR C 234 CIT C 236 HOH C 347 SITE 3 AC3 12 HOH C 371 HOH C 381 HOH C 399 HOH C 430 SITE 1 AC4 8 GLU C 34 LYS C 81 PR C 234 CIT C 235 SITE 2 AC4 8 HOH C 381 HOH C 392 HOH C 429 HOH C 430 CRYST1 69.556 69.556 86.209 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014377 0.008301 0.000000 0.00000 SCALE2 0.000000 0.016601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011600 0.00000