HEADER OXIDOREDUCTASE 07-OCT-11 3U4D TITLE CRYSTAL STRUCTURE OF YWFH, NADPH DEPENDENT REDUCTASE INVOLVED IN TITLE 2 BACILYSIN BIOSYNTHESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACILYSIN BIOSYNTHESIS OXIDOREDUCTASE YWFH; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: BSU37680, IPA-86R, YWFH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS NADPH BINDING MOTIF, ROSSMANN FOLD, SDR SUPERFAMILY, OXIDOREDUCTASE, KEYWDS 2 BACILYSIN BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR M.RAJAVEL,B.GOPAL REVDAT 4 01-NOV-23 3U4D 1 SEQADV REVDAT 3 07-FEB-18 3U4D 1 REMARK REVDAT 2 12-MAR-14 3U4D 1 JRNL REVDAT 1 06-MAR-13 3U4D 0 JRNL AUTH M.RAJAVEL,K.PERINBAM,B.GOPAL JRNL TITL STRUCTURAL INSIGHTS INTO THE ROLE OF BACILLUS SUBTILIS YWFH JRNL TITL 2 (BACG) IN TETRAHYDROTYROSINE SYNTHESIS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 324 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23519407 JRNL DOI 10.1107/S0907444912046690 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 8320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7112 - 3.8902 0.98 2839 141 0.2208 0.2615 REMARK 3 2 3.8902 - 3.0889 0.98 2670 132 0.1963 0.2578 REMARK 3 3 3.0889 - 2.6988 0.91 2415 123 0.2428 0.3691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 66.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.55500 REMARK 3 B22 (A**2) : 3.55500 REMARK 3 B33 (A**2) : -7.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1813 REMARK 3 ANGLE : 1.254 2449 REMARK 3 CHIRALITY : 0.081 283 REMARK 3 PLANARITY : 0.007 324 REMARK 3 DIHEDRAL : 16.089 668 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 2:7) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3894 -21.1114 19.5907 REMARK 3 T TENSOR REMARK 3 T11: 0.3822 T22: 1.0672 REMARK 3 T33: 0.9176 T12: 0.0209 REMARK 3 T13: 0.1930 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 3.1337 L22: 4.8337 REMARK 3 L33: 7.1034 L12: 2.9399 REMARK 3 L13: -0.3406 L23: -4.0946 REMARK 3 S TENSOR REMARK 3 S11: -0.9421 S12: -2.1673 S13: -1.6692 REMARK 3 S21: 0.1399 S22: -1.1418 S23: -0.9251 REMARK 3 S31: 0.5540 S32: -0.0169 S33: 1.9045 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 8:106) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9576 -16.1279 12.9677 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.4144 REMARK 3 T33: 0.0849 T12: 0.0378 REMARK 3 T13: 0.1925 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.0423 L22: 3.8492 REMARK 3 L33: 1.4953 L12: 1.4345 REMARK 3 L13: 0.5120 L23: -0.1705 REMARK 3 S TENSOR REMARK 3 S11: -0.0560 S12: 0.6973 S13: 0.0577 REMARK 3 S21: -0.3510 S22: 0.3747 S23: -0.2881 REMARK 3 S31: -0.2866 S32: 0.2647 S33: -0.2933 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 107:151) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0011 -25.7309 18.2390 REMARK 3 T TENSOR REMARK 3 T11: 0.1760 T22: 0.4286 REMARK 3 T33: 0.2328 T12: 0.0205 REMARK 3 T13: 0.1215 T23: -0.0833 REMARK 3 L TENSOR REMARK 3 L11: 0.7291 L22: 4.8885 REMARK 3 L33: 4.9318 L12: 1.8335 REMARK 3 L13: -0.0727 L23: 1.0065 REMARK 3 S TENSOR REMARK 3 S11: 0.5159 S12: 0.4205 S13: 0.5137 REMARK 3 S21: -0.2443 S22: -0.1508 S23: -0.0794 REMARK 3 S31: 0.0479 S32: -0.3496 S33: -0.3658 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 152:191) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6583 -24.6057 22.7977 REMARK 3 T TENSOR REMARK 3 T11: 0.2884 T22: 0.3833 REMARK 3 T33: 0.2919 T12: 0.0842 REMARK 3 T13: -0.0058 T23: -0.0636 REMARK 3 L TENSOR REMARK 3 L11: 2.0927 L22: 3.5365 REMARK 3 L33: 2.7925 L12: 1.6962 REMARK 3 L13: 0.8708 L23: -1.5093 REMARK 3 S TENSOR REMARK 3 S11: -0.1241 S12: 0.2495 S13: 0.1771 REMARK 3 S21: 0.1483 S22: -0.0338 S23: 0.1289 REMARK 3 S31: -0.2058 S32: 0.1249 S33: 0.2082 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 192:223) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2790 -4.4495 30.6496 REMARK 3 T TENSOR REMARK 3 T11: 0.6837 T22: 1.2397 REMARK 3 T33: 1.1854 T12: 0.0366 REMARK 3 T13: 0.0654 T23: 0.5688 REMARK 3 L TENSOR REMARK 3 L11: 5.7888 L22: 3.5973 REMARK 3 L33: 2.3060 L12: -0.4877 REMARK 3 L13: -0.0014 L23: -0.9179 REMARK 3 S TENSOR REMARK 3 S11: 0.1544 S12: -1.0344 S13: -0.1768 REMARK 3 S21: -0.5650 S22: -0.6973 S23: -0.4346 REMARK 3 S31: 0.3570 S32: 0.0911 S33: 0.4676 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 224:255) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4365 -19.3052 30.8167 REMARK 3 T TENSOR REMARK 3 T11: 0.4976 T22: 0.4730 REMARK 3 T33: 0.3969 T12: 0.1345 REMARK 3 T13: 0.1119 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 3.2513 L22: 3.1166 REMARK 3 L33: 1.7674 L12: 1.0681 REMARK 3 L13: 0.5435 L23: 0.3095 REMARK 3 S TENSOR REMARK 3 S11: 0.2498 S12: 0.4711 S13: -0.3431 REMARK 3 S21: 0.5620 S22: -0.0004 S23: -0.1793 REMARK 3 S31: -0.4026 S32: 0.0431 S33: -0.3355 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8551 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 28.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.24900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3U4C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 1.4M TRI-SODIUM CITRATE REMARK 280 DIHYDRATE, PH 7.5, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.03267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.01633 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 138.03267 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.01633 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 138.03267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 69.01633 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 138.03267 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.01633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 34.50300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -59.76095 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS A 193 REMARK 465 GLN A 194 REMARK 465 PHE A 195 REMARK 465 VAL A 196 REMARK 465 GLU A 197 REMARK 465 ASN A 198 REMARK 465 VAL A 199 REMARK 465 MET A 200 REMARK 465 LYS A 201 REMARK 465 LYS A 202 REMARK 465 ASN A 203 REMARK 465 SER A 204 REMARK 465 ILE A 205 REMARK 465 SER A 206 REMARK 465 LYS A 207 REMARK 465 GLN A 208 REMARK 465 LYS A 209 REMARK 465 MET A 256 REMARK 465 LYS A 257 REMARK 465 SER A 258 REMARK 465 ILE A 259 REMARK 465 LEU A 260 REMARK 465 GLU A 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 13 -174.50 -178.75 REMARK 500 GLU A 132 43.51 39.65 REMARK 500 LEU A 143 -158.55 -96.18 REMARK 500 GLU A 146 71.94 48.51 REMARK 500 MET A 151 34.32 -98.32 REMARK 500 PRO A 174 -23.39 -38.75 REMARK 500 ILE A 187 -90.73 -147.58 REMARK 500 THR A 189 91.52 -178.86 REMARK 500 ASP A 190 -109.58 26.70 REMARK 500 ASP A 190 -108.51 26.70 REMARK 500 ARG A 191 167.82 56.75 REMARK 500 ARG A 191 175.93 68.80 REMARK 500 GLU A 212 69.00 163.47 REMARK 500 ALA A 241 31.08 -94.76 REMARK 500 ALA A 251 53.58 -111.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 144 LYS A 145 -137.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U49 RELATED DB: PDB REMARK 900 RELATED ID: 3U4C RELATED DB: PDB DBREF 3U4D A 1 259 UNP P39644 YWFH_BACSU 1 259 SEQADV 3U4D MET A -19 UNP P39644 EXPRESSION TAG SEQADV 3U4D GLY A -18 UNP P39644 EXPRESSION TAG SEQADV 3U4D SER A -17 UNP P39644 EXPRESSION TAG SEQADV 3U4D SER A -16 UNP P39644 EXPRESSION TAG SEQADV 3U4D HIS A -15 UNP P39644 EXPRESSION TAG SEQADV 3U4D HIS A -14 UNP P39644 EXPRESSION TAG SEQADV 3U4D HIS A -13 UNP P39644 EXPRESSION TAG SEQADV 3U4D HIS A -12 UNP P39644 EXPRESSION TAG SEQADV 3U4D HIS A -11 UNP P39644 EXPRESSION TAG SEQADV 3U4D HIS A -10 UNP P39644 EXPRESSION TAG SEQADV 3U4D SER A -9 UNP P39644 EXPRESSION TAG SEQADV 3U4D SER A -8 UNP P39644 EXPRESSION TAG SEQADV 3U4D GLY A -7 UNP P39644 EXPRESSION TAG SEQADV 3U4D LEU A -6 UNP P39644 EXPRESSION TAG SEQADV 3U4D VAL A -5 UNP P39644 EXPRESSION TAG SEQADV 3U4D PRO A -4 UNP P39644 EXPRESSION TAG SEQADV 3U4D ARG A -3 UNP P39644 EXPRESSION TAG SEQADV 3U4D GLY A -2 UNP P39644 EXPRESSION TAG SEQADV 3U4D SER A -1 UNP P39644 EXPRESSION TAG SEQADV 3U4D HIS A 0 UNP P39644 EXPRESSION TAG SEQADV 3U4D LEU A 260 UNP P39644 CLONING ARTIFACT SEQADV 3U4D GLU A 261 UNP P39644 CLONING ARTIFACT SEQRES 1 A 281 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 281 LEU VAL PRO ARG GLY SER HIS MET SER LYS ARG THR ALA SEQRES 3 A 281 PHE VAL MET GLY ALA SER GLN GLY ILE GLY LYS ALA ILE SEQRES 4 A 281 ALA LEU LYS LEU ALA ASP GLN HIS PHE SER LEU VAL ILE SEQRES 5 A 281 ASN SER ARG ASN LEU ASP ASN ILE GLU SER VAL LYS GLU SEQRES 6 A 281 ASP ILE LEU ALA LYS HIS PRO GLU ALA SER VAL ILE VAL SEQRES 7 A 281 LEU ALA GLY ASP MET SER ASP GLN HIS THR ARG ALA GLY SEQRES 8 A 281 ILE PHE GLN LYS ILE GLU SER GLN CYS GLY ARG LEU ASP SEQRES 9 A 281 VAL LEU ILE ASN ASN ILE PRO GLY GLY ALA PRO ASP THR SEQRES 10 A 281 PHE ASP ASN CYS ASN ILE GLU ASP MET THR ALA THR PHE SEQRES 11 A 281 THR GLN LYS THR VAL ALA TYR ILE ASP ALA ILE LYS ARG SEQRES 12 A 281 ALA SER SER LEU MET LYS GLN ASN GLU PHE GLY ARG ILE SEQRES 13 A 281 ILE ASN ILE VAL GLY ASN LEU TRP LYS GLU PRO GLY ALA SEQRES 14 A 281 ASN MET PHE THR ASN SER MET MET ASN ALA ALA LEU ILE SEQRES 15 A 281 ASN ALA SER LYS ASN ILE SER ILE GLN LEU ALA PRO HIS SEQRES 16 A 281 ASN ILE THR VAL ASN CYS LEU ASN PRO GLY PHE ILE ALA SEQRES 17 A 281 THR ASP ARG TYR HIS GLN PHE VAL GLU ASN VAL MET LYS SEQRES 18 A 281 LYS ASN SER ILE SER LYS GLN LYS ALA GLU GLU GLN ILE SEQRES 19 A 281 ALA SER GLY ILE PRO MET LYS ARG VAL GLY SER ALA GLU SEQRES 20 A 281 GLU THR ALA ALA LEU ALA ALA PHE LEU ALA SER GLU GLU SEQRES 21 A 281 ALA SER TYR ILE THR GLY GLN GLN ILE SER ALA ASP GLY SEQRES 22 A 281 GLY SER MET LYS SER ILE LEU GLU FORMUL 2 HOH *16(H2 O) HELIX 1 1 GLN A 13 ASP A 25 1 13 HELIX 2 2 ASN A 36 HIS A 51 1 16 HELIX 3 3 ASP A 65 GLY A 81 1 17 HELIX 4 4 ASN A 102 LYS A 113 1 12 HELIX 5 5 LYS A 113 LYS A 129 1 17 HELIX 6 6 GLN A 130 GLU A 132 5 3 HELIX 7 7 MET A 151 ALA A 173 1 23 HELIX 8 8 SER A 225 SER A 238 1 14 HELIX 9 9 GLU A 239 SER A 242 5 4 SHEET 1 A 7 VAL A 56 VAL A 58 0 SHEET 2 A 7 SER A 29 ILE A 32 1 N ILE A 32 O ILE A 57 SHEET 3 A 7 THR A 5 VAL A 8 1 N ALA A 6 O SER A 29 SHEET 4 A 7 VAL A 85 ASN A 88 1 O VAL A 85 N PHE A 7 SHEET 5 A 7 GLY A 134 ILE A 139 1 O ILE A 139 N ASN A 88 SHEET 6 A 7 ILE A 177 PRO A 184 1 O THR A 178 N ILE A 136 SHEET 7 A 7 GLN A 247 ALA A 251 1 O GLN A 247 N CYS A 181 CISPEP 1 LEU A 143 TRP A 144 0 -18.71 CISPEP 2 PRO A 147 GLY A 148 0 1.07 CRYST1 69.006 69.006 207.049 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014491 0.008367 0.000000 0.00000 SCALE2 0.000000 0.016733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004830 0.00000