HEADER HYDROLASE/HYDROLASE INHIBITOR 08-OCT-11 3U4I TITLE CD38 STRUCTURE-BASED INHIBITOR DESIGN USING THE N1-CYCLIC INOSINE 5'- TITLE 2 DIPHOSPHATE RIBOSE TEMPLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYL CYCLASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, ENZYMATIC DOMAIN; COMPND 5 SYNONYM: CYCLIC ADP-RIBOSE HYDROLASE 1, CADPR HYDROLASE 1, T10; COMPND 6 EC: 3.2.2.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD38; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS NON-HYDROLYZABLE INHIBITOR, TWO DOMAINS, CADPR CYCLIZATION, KEYWDS 2 HYDROLYSIS, CADPCR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.LIU,Q.HAO,H.C.LEE,R.GRAEFF REVDAT 3 01-NOV-23 3U4I 1 REMARK SEQADV REVDAT 2 24-JUL-13 3U4I 1 JRNL REVDAT 1 10-OCT-12 3U4I 0 JRNL AUTH C.MOREAU,Q.LIU,R.GRAEFF,G.K.WAGNER,M.P.THOMAS,J.M.SWARBRICK, JRNL AUTH 2 S.SHUTO,H.C.LEE,Q.HAO,B.V.L.POTTER JRNL TITL CD38 STRUCTURE-BASED INHIBITOR DESIGN USING THE N1-CYCLIC JRNL TITL 2 INOSINE 5'-DIPHOSPHATE RIBOSE TEMPLATE JRNL REF PLOS ONE V. 8 66247 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23840430 JRNL DOI 10.1371/JOURNAL.PONE.0066247 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 30761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.4359 - 4.6979 0.99 2744 146 0.1685 0.2051 REMARK 3 2 4.6979 - 3.7338 0.99 2756 149 0.1478 0.1763 REMARK 3 3 3.7338 - 3.2632 0.99 2719 162 0.1752 0.2034 REMARK 3 4 3.2632 - 2.9655 0.99 2757 134 0.1879 0.2422 REMARK 3 5 2.9655 - 2.7533 0.98 2743 138 0.1943 0.2542 REMARK 3 6 2.7533 - 2.5912 0.98 2731 148 0.1887 0.2325 REMARK 3 7 2.5912 - 2.4615 0.98 2674 145 0.1857 0.2373 REMARK 3 8 2.4615 - 2.3545 0.97 2691 136 0.1884 0.2377 REMARK 3 9 2.3545 - 2.2639 0.96 2695 144 0.1862 0.2225 REMARK 3 10 2.2639 - 2.1859 0.91 2546 147 0.1937 0.2283 REMARK 3 11 2.1859 - 2.1176 0.79 2155 101 0.2185 0.2989 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 58.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.78220 REMARK 3 B22 (A**2) : 0.16470 REMARK 3 B33 (A**2) : 6.61750 REMARK 3 B12 (A**2) : 2.66220 REMARK 3 B13 (A**2) : 1.63320 REMARK 3 B23 (A**2) : 5.02600 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4127 REMARK 3 ANGLE : 1.051 5584 REMARK 3 CHIRALITY : 0.072 606 REMARK 3 PLANARITY : 0.005 707 REMARK 3 DIHEDRAL : 18.858 1522 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 45:49) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6753 -18.3494 13.2753 REMARK 3 T TENSOR REMARK 3 T11: 0.5516 T22: 0.9801 REMARK 3 T33: 0.9279 T12: 0.1020 REMARK 3 T13: -0.1699 T23: 0.2666 REMARK 3 L TENSOR REMARK 3 L11: 0.7640 L22: 5.2524 REMARK 3 L33: 6.3660 L12: 2.0022 REMARK 3 L13: -1.2443 L23: -3.4143 REMARK 3 S TENSOR REMARK 3 S11: 0.4263 S12: 0.3642 S13: 1.1846 REMARK 3 S21: 0.4949 S22: -1.2514 S23: -0.1069 REMARK 3 S31: -0.0468 S32: 0.0928 S33: 0.7190 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 50:103) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7585 -15.2811 -2.4671 REMARK 3 T TENSOR REMARK 3 T11: 0.2026 T22: 0.1731 REMARK 3 T33: 0.7059 T12: -0.0065 REMARK 3 T13: -0.0085 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.5253 L22: 5.1702 REMARK 3 L33: 1.4539 L12: -2.1681 REMARK 3 L13: 1.0158 L23: -1.3303 REMARK 3 S TENSOR REMARK 3 S11: 0.1323 S12: 0.0200 S13: -1.3060 REMARK 3 S21: -0.1229 S22: 0.1657 S23: 0.4419 REMARK 3 S31: 0.1787 S32: -0.1475 S33: -0.2788 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 104:129) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7927 -1.8187 -5.5088 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.2030 REMARK 3 T33: 0.3110 T12: 0.0291 REMARK 3 T13: -0.0084 T23: -0.0566 REMARK 3 L TENSOR REMARK 3 L11: 1.7570 L22: 1.2890 REMARK 3 L33: 0.3418 L12: -0.3869 REMARK 3 L13: -0.0715 L23: -0.6342 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: 0.1471 S13: -0.6672 REMARK 3 S21: -0.0025 S22: -0.0272 S23: 0.0629 REMARK 3 S31: -0.0675 S32: 0.0268 S33: -0.0255 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 130:143) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7542 2.4657 6.0311 REMARK 3 T TENSOR REMARK 3 T11: 0.4169 T22: 0.3314 REMARK 3 T33: 0.2946 T12: -0.0203 REMARK 3 T13: 0.0970 T23: 0.0844 REMARK 3 L TENSOR REMARK 3 L11: 0.5564 L22: 3.1258 REMARK 3 L33: 1.9975 L12: 0.1211 REMARK 3 L13: -0.7313 L23: -1.9565 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: 0.1019 S13: -0.2597 REMARK 3 S21: 0.4428 S22: 0.3141 S23: 0.6532 REMARK 3 S31: -0.2637 S32: -0.3627 S33: -0.2634 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 144:193) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3564 -9.3370 0.6381 REMARK 3 T TENSOR REMARK 3 T11: 0.2568 T22: 0.1697 REMARK 3 T33: 0.5372 T12: 0.0297 REMARK 3 T13: -0.0385 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.5506 L22: 3.6646 REMARK 3 L33: 0.8088 L12: -0.6600 REMARK 3 L13: 0.1596 L23: -1.4033 REMARK 3 S TENSOR REMARK 3 S11: -0.1767 S12: -0.0459 S13: -0.2436 REMARK 3 S21: 0.4106 S22: 0.0892 S23: -0.6891 REMARK 3 S31: -0.0858 S32: 0.1250 S33: 0.0764 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 194:244) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5842 10.6623 -1.4683 REMARK 3 T TENSOR REMARK 3 T11: 0.2259 T22: 0.2143 REMARK 3 T33: 0.1577 T12: 0.0225 REMARK 3 T13: 0.0104 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 3.2125 L22: 4.0408 REMARK 3 L33: 0.6514 L12: 0.5211 REMARK 3 L13: -0.3386 L23: -0.6335 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: -0.0185 S13: -0.1851 REMARK 3 S21: 0.3116 S22: -0.0279 S23: -0.1056 REMARK 3 S31: 0.0109 S32: 0.1457 S33: 0.0203 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 250:275) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1225 20.9504 1.3640 REMARK 3 T TENSOR REMARK 3 T11: 0.2149 T22: 0.1470 REMARK 3 T33: 0.1723 T12: -0.0242 REMARK 3 T13: -0.0366 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 2.6366 L22: 3.3539 REMARK 3 L33: 0.6581 L12: 0.8406 REMARK 3 L13: -0.8468 L23: 0.3725 REMARK 3 S TENSOR REMARK 3 S11: 0.2709 S12: 0.0439 S13: 0.6169 REMARK 3 S21: 0.1041 S22: -0.0996 S23: -0.1076 REMARK 3 S31: -0.4242 S32: -0.0118 S33: -0.1133 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 276:296) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0573 12.6904 14.5781 REMARK 3 T TENSOR REMARK 3 T11: 0.6580 T22: 0.6699 REMARK 3 T33: 0.3112 T12: 0.0767 REMARK 3 T13: 0.2047 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 3.6185 L22: 0.6960 REMARK 3 L33: 0.6083 L12: -0.3350 REMARK 3 L13: 0.7127 L23: -0.2345 REMARK 3 S TENSOR REMARK 3 S11: 0.4479 S12: -1.3313 S13: 0.4815 REMARK 3 S21: 0.7346 S22: 0.0905 S23: 0.6876 REMARK 3 S31: -0.4479 S32: -0.6847 S33: -0.2762 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 45:48) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5978 11.9863 3.5778 REMARK 3 T TENSOR REMARK 3 T11: 0.5015 T22: 0.7007 REMARK 3 T33: 0.2156 T12: 0.3401 REMARK 3 T13: -0.0381 T23: 0.2130 REMARK 3 L TENSOR REMARK 3 L11: 0.8258 L22: 2.1148 REMARK 3 L33: 0.1692 L12: 1.2506 REMARK 3 L13: 0.1673 L23: 0.0827 REMARK 3 S TENSOR REMARK 3 S11: -0.2310 S12: -0.2956 S13: -0.6817 REMARK 3 S21: -0.6785 S22: 0.6283 S23: 0.2194 REMARK 3 S31: -0.5800 S32: -1.4131 S33: -0.2436 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 49:58) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0787 13.7593 -11.0347 REMARK 3 T TENSOR REMARK 3 T11: 0.1853 T22: 0.2647 REMARK 3 T33: 0.1802 T12: 0.0079 REMARK 3 T13: 0.0101 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 1.5424 L22: 1.5656 REMARK 3 L33: 0.5524 L12: 0.7382 REMARK 3 L13: 0.0305 L23: -0.7243 REMARK 3 S TENSOR REMARK 3 S11: -0.2272 S12: 0.0507 S13: 0.0221 REMARK 3 S21: -0.3119 S22: -0.0185 S23: -0.1861 REMARK 3 S31: 0.1024 S32: 0.0126 S33: 0.1680 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 59:116) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0824 22.5269 -26.1912 REMARK 3 T TENSOR REMARK 3 T11: 0.3131 T22: 0.2760 REMARK 3 T33: 0.2354 T12: 0.0036 REMARK 3 T13: 0.0006 T23: 0.0760 REMARK 3 L TENSOR REMARK 3 L11: 2.6228 L22: 1.5489 REMARK 3 L33: 2.1190 L12: 0.3187 REMARK 3 L13: -0.0515 L23: 0.1203 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: 0.4108 S13: 0.3052 REMARK 3 S21: -0.3007 S22: -0.0119 S23: 0.0096 REMARK 3 S31: -0.3486 S32: -0.1283 S33: 0.0275 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 117:140) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1170 5.1327 -37.6798 REMARK 3 T TENSOR REMARK 3 T11: 0.2997 T22: 0.4408 REMARK 3 T33: 0.4320 T12: -0.0306 REMARK 3 T13: -0.0449 T23: -0.0631 REMARK 3 L TENSOR REMARK 3 L11: 6.0692 L22: 1.9307 REMARK 3 L33: 4.8402 L12: 1.9700 REMARK 3 L13: 0.3252 L23: 2.6021 REMARK 3 S TENSOR REMARK 3 S11: 0.5740 S12: 0.8950 S13: -0.8885 REMARK 3 S21: -0.0869 S22: 0.2288 S23: -0.4423 REMARK 3 S31: -0.0965 S32: 0.3611 S33: -0.6716 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 141:167) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2687 15.6714 -24.1659 REMARK 3 T TENSOR REMARK 3 T11: 0.2908 T22: 0.2001 REMARK 3 T33: 0.1966 T12: 0.0097 REMARK 3 T13: 0.0133 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 2.4437 L22: 0.9654 REMARK 3 L33: 0.2529 L12: 1.3158 REMARK 3 L13: 0.6858 L23: 0.2254 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: 0.2846 S13: 0.0105 REMARK 3 S21: -0.1429 S22: 0.0794 S23: 0.0356 REMARK 3 S31: -0.1727 S32: 0.2385 S33: -0.1232 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 168:195) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9439 10.5719 -17.2429 REMARK 3 T TENSOR REMARK 3 T11: 0.1972 T22: 0.2166 REMARK 3 T33: 0.2525 T12: -0.0281 REMARK 3 T13: -0.0061 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.6911 L22: 0.4425 REMARK 3 L33: 2.4459 L12: -0.7150 REMARK 3 L13: -1.8739 L23: -0.0591 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0018 S13: -0.4292 REMARK 3 S21: -0.0259 S22: -0.1202 S23: 0.0780 REMARK 3 S31: 0.2550 S32: -0.3051 S33: 0.1527 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 196:244) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7797 -0.6543 -35.5323 REMARK 3 T TENSOR REMARK 3 T11: 0.3821 T22: 0.4834 REMARK 3 T33: 0.4877 T12: -0.0399 REMARK 3 T13: -0.1163 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 3.0214 L22: 3.0792 REMARK 3 L33: 4.3090 L12: 2.9843 REMARK 3 L13: 0.3766 L23: 1.1230 REMARK 3 S TENSOR REMARK 3 S11: 0.3844 S12: -0.0216 S13: -1.0061 REMARK 3 S21: 0.3175 S22: -0.1149 S23: -0.0611 REMARK 3 S31: 0.4279 S32: -0.8451 S33: -0.2553 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 250:275) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3232 -10.1676 -37.5746 REMARK 3 T TENSOR REMARK 3 T11: 0.5196 T22: 0.4777 REMARK 3 T33: 1.0181 T12: -0.2210 REMARK 3 T13: -0.3002 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 5.6263 L22: 4.6594 REMARK 3 L33: 3.7933 L12: 4.8693 REMARK 3 L13: 0.8938 L23: 2.0593 REMARK 3 S TENSOR REMARK 3 S11: 0.9814 S12: 0.3065 S13: -2.2637 REMARK 3 S21: 0.2001 S22: -0.1572 S23: 0.3641 REMARK 3 S31: 0.8629 S32: -0.7970 S33: -0.6808 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 276:289) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2025 -6.2817 -42.2756 REMARK 3 T TENSOR REMARK 3 T11: 0.4510 T22: 0.8473 REMARK 3 T33: 1.2489 T12: 0.1726 REMARK 3 T13: -0.1399 T23: -0.6407 REMARK 3 L TENSOR REMARK 3 L11: 2.2522 L22: 5.0091 REMARK 3 L33: 5.6036 L12: -3.2439 REMARK 3 L13: 1.6610 L23: -1.1708 REMARK 3 S TENSOR REMARK 3 S11: 0.7582 S12: 1.4745 S13: -1.5717 REMARK 3 S21: -0.3386 S22: -0.1066 S23: 0.1274 REMARK 3 S31: 0.6744 S32: 2.0103 S33: -0.6395 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068295. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30776 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2PGJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, 12% PEG 4000, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 39 REMARK 465 ARG A 40 REMARK 465 GLU A 41 REMARK 465 ALA A 42 REMARK 465 GLU A 43 REMARK 465 ALA A 44 REMARK 465 GLY A 245 REMARK 465 GLY A 246 REMARK 465 ARG A 247 REMARK 465 GLU A 248 REMARK 465 ASP A 249 REMARK 465 THR A 297 REMARK 465 SER A 298 REMARK 465 GLU A 299 REMARK 465 ILE A 300 REMARK 465 LYS B 39 REMARK 465 ARG B 40 REMARK 465 GLU B 41 REMARK 465 ALA B 42 REMARK 465 GLU B 43 REMARK 465 ALA B 44 REMARK 465 GLY B 245 REMARK 465 GLY B 246 REMARK 465 ARG B 247 REMARK 465 GLU B 248 REMARK 465 ASP B 249 REMARK 465 ASN B 290 REMARK 465 PRO B 291 REMARK 465 GLU B 292 REMARK 465 ASP B 293 REMARK 465 SER B 294 REMARK 465 SER B 295 REMARK 465 CYS B 296 REMARK 465 THR B 297 REMARK 465 SER B 298 REMARK 465 GLU B 299 REMARK 465 ILE B 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 127 19.51 57.81 REMARK 500 GLN A 139 25.63 -150.27 REMARK 500 ASP A 179 -71.54 -105.21 REMARK 500 ASN A 182 44.77 -88.37 REMARK 500 ASP A 202 -116.77 60.56 REMARK 500 ASN A 270 36.78 70.52 REMARK 500 ILE B 128 58.51 -149.13 REMARK 500 GLN B 139 78.90 -101.46 REMARK 500 ARG B 140 12.66 -68.40 REMARK 500 ASP B 179 -77.51 -106.70 REMARK 500 ASN B 182 54.84 -91.20 REMARK 500 ASP B 202 -113.65 61.93 REMARK 500 SER B 211 30.16 -147.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVR A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U4H RELATED DB: PDB REMARK 900 CD38 COMPLEXED WITH 8-AMINO-N1-CIDPR DBREF 3U4I A 45 300 UNP P28907 CD38_HUMAN 45 300 DBREF 3U4I B 45 300 UNP P28907 CD38_HUMAN 45 300 SEQADV 3U4I LYS A 39 UNP P28907 EXPRESSION TAG SEQADV 3U4I ARG A 40 UNP P28907 EXPRESSION TAG SEQADV 3U4I GLU A 41 UNP P28907 EXPRESSION TAG SEQADV 3U4I ALA A 42 UNP P28907 EXPRESSION TAG SEQADV 3U4I GLU A 43 UNP P28907 EXPRESSION TAG SEQADV 3U4I ALA A 44 UNP P28907 EXPRESSION TAG SEQADV 3U4I THR A 49 UNP P28907 GLN 49 ENGINEERED MUTATION SEQADV 3U4I ASP A 100 UNP P28907 ASN 100 ENGINEERED MUTATION SEQADV 3U4I ASP A 164 UNP P28907 ASN 164 ENGINEERED MUTATION SEQADV 3U4I ASP A 209 UNP P28907 ASN 209 ENGINEERED MUTATION SEQADV 3U4I ASP A 219 UNP P28907 ASN 219 ENGINEERED MUTATION SEQADV 3U4I LYS B 39 UNP P28907 EXPRESSION TAG SEQADV 3U4I ARG B 40 UNP P28907 EXPRESSION TAG SEQADV 3U4I GLU B 41 UNP P28907 EXPRESSION TAG SEQADV 3U4I ALA B 42 UNP P28907 EXPRESSION TAG SEQADV 3U4I GLU B 43 UNP P28907 EXPRESSION TAG SEQADV 3U4I ALA B 44 UNP P28907 EXPRESSION TAG SEQADV 3U4I THR B 49 UNP P28907 GLN 49 ENGINEERED MUTATION SEQADV 3U4I ASP B 100 UNP P28907 ASN 100 ENGINEERED MUTATION SEQADV 3U4I ASP B 164 UNP P28907 ASN 164 ENGINEERED MUTATION SEQADV 3U4I ASP B 209 UNP P28907 ASN 209 ENGINEERED MUTATION SEQADV 3U4I ASP B 219 UNP P28907 ASN 219 ENGINEERED MUTATION SEQRES 1 A 262 LYS ARG GLU ALA GLU ALA ARG TRP ARG GLN THR TRP SER SEQRES 2 A 262 GLY PRO GLY THR THR LYS ARG PHE PRO GLU THR VAL LEU SEQRES 3 A 262 ALA ARG CYS VAL LYS TYR THR GLU ILE HIS PRO GLU MET SEQRES 4 A 262 ARG HIS VAL ASP CYS GLN SER VAL TRP ASP ALA PHE LYS SEQRES 5 A 262 GLY ALA PHE ILE SER LYS HIS PRO CYS ASP ILE THR GLU SEQRES 6 A 262 GLU ASP TYR GLN PRO LEU MET LYS LEU GLY THR GLN THR SEQRES 7 A 262 VAL PRO CYS ASN LYS ILE LEU LEU TRP SER ARG ILE LYS SEQRES 8 A 262 ASP LEU ALA HIS GLN PHE THR GLN VAL GLN ARG ASP MET SEQRES 9 A 262 PHE THR LEU GLU ASP THR LEU LEU GLY TYR LEU ALA ASP SEQRES 10 A 262 ASP LEU THR TRP CYS GLY GLU PHE ASP THR SER LYS ILE SEQRES 11 A 262 ASN TYR GLN SER CYS PRO ASP TRP ARG LYS ASP CYS SER SEQRES 12 A 262 ASN ASN PRO VAL SER VAL PHE TRP LYS THR VAL SER ARG SEQRES 13 A 262 ARG PHE ALA GLU ALA ALA CYS ASP VAL VAL HIS VAL MET SEQRES 14 A 262 LEU ASP GLY SER ARG SER LYS ILE PHE ASP LYS ASP SER SEQRES 15 A 262 THR PHE GLY SER VAL GLU VAL HIS ASN LEU GLN PRO GLU SEQRES 16 A 262 LYS VAL GLN THR LEU GLU ALA TRP VAL ILE HIS GLY GLY SEQRES 17 A 262 ARG GLU ASP SER ARG ASP LEU CYS GLN ASP PRO THR ILE SEQRES 18 A 262 LYS GLU LEU GLU SER ILE ILE SER LYS ARG ASN ILE GLN SEQRES 19 A 262 PHE SER CYS LYS ASN ILE TYR ARG PRO ASP LYS PHE LEU SEQRES 20 A 262 GLN CYS VAL LYS ASN PRO GLU ASP SER SER CYS THR SER SEQRES 21 A 262 GLU ILE SEQRES 1 B 262 LYS ARG GLU ALA GLU ALA ARG TRP ARG GLN THR TRP SER SEQRES 2 B 262 GLY PRO GLY THR THR LYS ARG PHE PRO GLU THR VAL LEU SEQRES 3 B 262 ALA ARG CYS VAL LYS TYR THR GLU ILE HIS PRO GLU MET SEQRES 4 B 262 ARG HIS VAL ASP CYS GLN SER VAL TRP ASP ALA PHE LYS SEQRES 5 B 262 GLY ALA PHE ILE SER LYS HIS PRO CYS ASP ILE THR GLU SEQRES 6 B 262 GLU ASP TYR GLN PRO LEU MET LYS LEU GLY THR GLN THR SEQRES 7 B 262 VAL PRO CYS ASN LYS ILE LEU LEU TRP SER ARG ILE LYS SEQRES 8 B 262 ASP LEU ALA HIS GLN PHE THR GLN VAL GLN ARG ASP MET SEQRES 9 B 262 PHE THR LEU GLU ASP THR LEU LEU GLY TYR LEU ALA ASP SEQRES 10 B 262 ASP LEU THR TRP CYS GLY GLU PHE ASP THR SER LYS ILE SEQRES 11 B 262 ASN TYR GLN SER CYS PRO ASP TRP ARG LYS ASP CYS SER SEQRES 12 B 262 ASN ASN PRO VAL SER VAL PHE TRP LYS THR VAL SER ARG SEQRES 13 B 262 ARG PHE ALA GLU ALA ALA CYS ASP VAL VAL HIS VAL MET SEQRES 14 B 262 LEU ASP GLY SER ARG SER LYS ILE PHE ASP LYS ASP SER SEQRES 15 B 262 THR PHE GLY SER VAL GLU VAL HIS ASN LEU GLN PRO GLU SEQRES 16 B 262 LYS VAL GLN THR LEU GLU ALA TRP VAL ILE HIS GLY GLY SEQRES 17 B 262 ARG GLU ASP SER ARG ASP LEU CYS GLN ASP PRO THR ILE SEQRES 18 B 262 LYS GLU LEU GLU SER ILE ILE SER LYS ARG ASN ILE GLN SEQRES 19 B 262 PHE SER CYS LYS ASN ILE TYR ARG PRO ASP LYS PHE LEU SEQRES 20 B 262 GLN CYS VAL LYS ASN PRO GLU ASP SER SER CYS THR SER SEQRES 21 B 262 GLU ILE HET CVR A 401 35 HETNAM CVR CYCLIC ADENOSINE 5'-DIPHOSPHOCARBOCYCLIC RIBOSE FORMUL 3 CVR C16 H23 N5 O12 P2 FORMUL 4 HOH *148(H2 O) HELIX 1 1 ARG A 58 HIS A 74 1 17 HELIX 2 2 PRO A 75 ARG A 78 5 4 HELIX 3 3 ASP A 81 ILE A 94 1 14 HELIX 4 4 THR A 102 ASP A 105 5 4 HELIX 5 5 TYR A 106 GLY A 113 1 8 HELIX 6 6 PRO A 118 LYS A 121 5 4 HELIX 7 7 ILE A 128 VAL A 138 1 11 HELIX 8 8 THR A 144 ASP A 147 5 4 HELIX 9 9 THR A 148 ASP A 155 1 8 HELIX 10 10 ASN A 183 ALA A 199 1 17 HELIX 11 11 SER A 220 VAL A 225 1 6 HELIX 12 12 VAL A 225 LEU A 230 1 6 HELIX 13 13 ASP A 252 GLN A 255 5 4 HELIX 14 14 ASP A 256 ARG A 269 1 14 HELIX 15 15 ARG A 280 ASN A 290 1 11 HELIX 16 16 ARG B 58 HIS B 74 1 17 HELIX 17 17 PRO B 75 ARG B 78 5 4 HELIX 18 18 ASP B 81 ILE B 94 1 14 HELIX 19 19 THR B 102 ASP B 105 5 4 HELIX 20 20 TYR B 106 GLY B 113 1 8 HELIX 21 21 ILE B 128 GLN B 137 1 10 HELIX 22 22 THR B 144 ASP B 147 5 4 HELIX 23 23 THR B 148 ASP B 155 1 8 HELIX 24 24 ASN B 183 ALA B 200 1 18 HELIX 25 25 SER B 220 VAL B 225 1 6 HELIX 26 26 GLU B 226 LEU B 230 5 5 HELIX 27 27 ASP B 252 GLN B 255 5 4 HELIX 28 28 ASP B 256 LYS B 268 1 13 HELIX 29 29 ARG B 280 LYS B 289 1 10 SHEET 1 A 2 GLY A 52 PRO A 53 0 SHEET 2 A 2 SER A 172 CYS A 173 -1 O CYS A 173 N GLY A 52 SHEET 1 B 4 LEU A 123 SER A 126 0 SHEET 2 B 4 ASP A 202 ASP A 209 1 O HIS A 205 N LEU A 124 SHEET 3 B 4 VAL A 235 ILE A 243 1 O TRP A 241 N VAL A 206 SHEET 4 B 4 GLN A 272 ILE A 278 1 O ILE A 278 N VAL A 242 SHEET 1 C 2 GLY B 52 PRO B 53 0 SHEET 2 C 2 SER B 172 CYS B 173 -1 O CYS B 173 N GLY B 52 SHEET 1 D 4 LEU B 123 SER B 126 0 SHEET 2 D 4 ASP B 202 ASP B 209 1 O HIS B 205 N LEU B 124 SHEET 3 D 4 VAL B 235 ILE B 243 1 O GLU B 239 N VAL B 204 SHEET 4 D 4 GLN B 272 ILE B 278 1 O GLN B 272 N LEU B 238 SSBOND 1 CYS A 67 CYS A 82 1555 1555 2.07 SSBOND 2 CYS A 99 CYS A 180 1555 1555 2.06 SSBOND 3 CYS A 119 CYS A 201 1555 1555 2.05 SSBOND 4 CYS A 160 CYS A 173 1555 1555 2.05 SSBOND 5 CYS A 254 CYS A 275 1555 1555 2.06 SSBOND 6 CYS A 287 CYS A 296 1555 1555 2.03 SSBOND 7 CYS B 67 CYS B 82 1555 1555 2.06 SSBOND 8 CYS B 99 CYS B 180 1555 1555 2.06 SSBOND 9 CYS B 119 CYS B 201 1555 1555 2.04 SSBOND 10 CYS B 160 CYS B 173 1555 1555 2.09 SSBOND 11 CYS B 254 CYS B 275 1555 1555 2.03 SITE 1 AC1 17 LEU A 124 TRP A 125 SER A 126 ARG A 127 SITE 2 AC1 17 LEU A 145 GLU A 146 SER A 186 TRP A 189 SITE 3 AC1 17 SER A 193 SER A 220 THR A 221 PHE A 222 SITE 4 AC1 17 GLU A 226 HOH A 503 HOH A 546 HOH A 547 SITE 5 AC1 17 HOH A 574 CRYST1 42.223 53.998 66.547 105.20 91.08 94.68 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023684 0.001939 0.000995 0.00000 SCALE2 0.000000 0.018581 0.005099 0.00000 SCALE3 0.000000 0.000000 0.015585 0.00000