HEADER TRANSFERASE/TRANSFERASE INHIBITOR 10-OCT-11 3U4W TITLE SRC IN COMPLEX WITH DNA-TEMPLATED MACROCYCLIC INHIBITOR MC4B COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SRC KINASE DOMAIN (UNP RESIDUES 259-533); COMPND 5 SYNONYM: C-SRC KINASE, PROTO-ONCOGENE C-SRC, PP60C-SRC, P60-SRC; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: MACROCYCLIC INHIBITOR MC4B; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: SRC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS PROTEIN KINASE, SRC-LIKE INACTIVE CONFORMATION, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SEELIGER,D.R.LIU,G.GEORGHIOU,R.E.KLEINER,M.PULKOSKI-GROSS REVDAT 7 09-OCT-24 3U4W 1 REMARK REVDAT 6 15-NOV-23 3U4W 1 LINK ATOM REVDAT 5 13-SEP-23 3U4W 1 REMARK REVDAT 4 23-SEP-20 3U4W 1 REMARK LINK REVDAT 3 04-APR-12 3U4W 1 JRNL REVDAT 2 07-MAR-12 3U4W 1 JRNL REVDAT 1 22-FEB-12 3U4W 0 JRNL AUTH G.GEORGHIOU,R.E.KLEINER,M.PULKOSKI-GROSS,D.R.LIU, JRNL AUTH 2 M.A.SEELIGER JRNL TITL HIGHLY SPECIFIC, BISUBSTRATE-COMPETITIVE SRC INHIBITORS FROM JRNL TITL 2 DNA-TEMPLATED MACROCYCLES. JRNL REF NAT.CHEM.BIOL. V. 8 366 2012 JRNL REFN ISSN 1552-4450 JRNL PMID 22344177 JRNL DOI 10.1038/NCHEMBIO.792 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.650 REMARK 3 FREE R VALUE TEST SET COUNT : 1418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3832 - 4.0924 1.00 3866 151 0.1786 0.1848 REMARK 3 2 4.0924 - 3.2487 1.00 3775 143 0.1423 0.1539 REMARK 3 3 3.2487 - 2.8382 1.00 3767 142 0.1536 0.2038 REMARK 3 4 2.8382 - 2.5787 1.00 3720 142 0.1626 0.1940 REMARK 3 5 2.5787 - 2.3939 1.00 3748 136 0.1605 0.1873 REMARK 3 6 2.3939 - 2.2528 1.00 3737 142 0.1567 0.1814 REMARK 3 7 2.2528 - 2.1400 1.00 3708 139 0.1624 0.1844 REMARK 3 8 2.1400 - 2.0468 1.00 3686 141 0.1691 0.1933 REMARK 3 9 2.0468 - 1.9681 1.00 3687 140 0.1731 0.2230 REMARK 3 10 1.9681 - 1.9000 1.00 3741 142 0.1901 0.2057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 38.45 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.21380 REMARK 3 B22 (A**2) : 1.21380 REMARK 3 B33 (A**2) : -2.42760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2358 REMARK 3 ANGLE : 1.117 3190 REMARK 3 CHIRALITY : 0.072 334 REMARK 3 PLANARITY : 0.009 406 REMARK 3 DIHEDRAL : 20.395 902 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U4W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL FOCUSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 41.457 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.42100 REMARK 200 R SYM FOR SHELL (I) : 0.42100 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2SRC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3% GLYCEROL, 200 MM AMMONIUM SULFATE, REMARK 280 PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 917 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 986 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE (2S,5S,8S,13S,16Z)-5-BENZYL-2-(CYCLOHEXYLMETHYL)-3,6,9,15,18- REMARK 400 PENTAOXO-8-{3-[(PYRAZIN-2-YLCARBONYL)AMINO]PROPYL}-1,4,7,10,14- REMARK 400 PENTAAZACYCLOOCTADEC-16-ENE-13-CARBOXYLIC ACID IS PEPTIDE-LIKE, A REMARK 400 MEMBER OF INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: (2S,5S,8S,13S,16Z)-5-BENZYL-2-(CYCLOHEXYLMETHYL)-3,6,9,15, REMARK 400 18-PENTAOXO-8-{3-[(PYRAZIN-2-YLCARBONYL)AMINO]PROPYL}-1,4,7, REMARK 400 10,14-PENTAAZACYCLOOCTADEC-16-ENE-13-CARBOXYLIC ACID REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O7 FUM B 1 N DAB B 5 2.07 REMARK 500 OE1 GLN A 528 O HOH A 927 2.09 REMARK 500 O HOH A 742 O HOH A 863 2.12 REMARK 500 O HOH A 775 O HOH A 929 2.16 REMARK 500 O2 SO4 A 603 O HOH A 994 2.16 REMARK 500 O HOH A 928 O HOH A 932 2.18 REMARK 500 OE1 GLU A 504 O HOH A 924 2.18 REMARK 500 O HOH A 834 O HOH A 992 2.18 REMARK 500 O HOH A 936 O HOH A 941 2.19 REMARK 500 O HOH A 710 O HOH A 938 2.19 REMARK 500 OD2 ASP A 518 O HOH A 709 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 924 O HOH A 931 6555 2.08 REMARK 500 O HOH A 983 O HOH A 987 1554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 FUM B 1 O - C - N ANGL. DEV. = -12.9 DEGREES REMARK 500 ALC B 2 CA - C - N ANGL. DEV. = 30.2 DEGREES REMARK 500 ALC B 2 O - C - N ANGL. DEV. = -18.4 DEGREES REMARK 500 PHE B 3 C - N - CA ANGL. DEV. = 31.6 DEGREES REMARK 500 PHE B 3 CA - C - O ANGL. DEV. = -16.0 DEGREES REMARK 500 PHE B 3 CA - C - N ANGL. DEV. = 23.8 DEGREES REMARK 500 PHE B 3 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 385 -19.64 89.89 REMARK 500 ASP A 413 131.34 -39.03 REMARK 500 ALC B 2 -63.94 -138.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 405 10.24 REMARK 500 PHE B 3 -18.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF MACROCYCLIC REMARK 800 INHIBITOR MC4B REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U51 RELATED DB: PDB DBREF 3U4W A 259 533 UNP P00523 SRC_CHICK 259 533 DBREF 3U4W B 1 5 PDB 3U4W 3U4W 1 5 SEQRES 1 A 275 ALA TRP GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL SEQRES 2 A 275 LYS LEU GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY SEQRES 3 A 275 THR TRP ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU SEQRES 4 A 275 LYS PRO GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU SEQRES 5 A 275 ALA GLN VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL SEQRES 6 A 275 GLN LEU TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE SEQRES 7 A 275 VAL THR GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE SEQRES 8 A 275 LEU LYS GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN SEQRES 9 A 275 LEU VAL ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA SEQRES 10 A 275 TYR VAL GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG SEQRES 11 A 275 ALA ALA ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS SEQRES 12 A 275 VAL ALA ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN SEQRES 13 A 275 GLU TYR THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS SEQRES 14 A 275 TRP THR ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR SEQRES 15 A 275 ILE LYS SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR SEQRES 16 A 275 GLU LEU THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET SEQRES 17 A 275 VAL ASN ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR SEQRES 18 A 275 ARG MET PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS SEQRES 19 A 275 ASP LEU MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU SEQRES 20 A 275 ARG PRO THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP SEQRES 21 A 275 TYR PHE THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU SEQRES 22 A 275 ASN LEU SEQRES 1 B 5 FUM ALC PHE 08M DAB MODRES 3U4W ALC B 2 ALA 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID MODRES 3U4W DAB B 5 ALA 2,4-DIAMINOBUTYRIC ACID HET FUM B 1 6 HET ALC B 2 11 HET 08M B 4 16 HET DAB B 5 8 HET GOL A 601 6 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET GOL A 607 6 HET GOL A 608 6 HETNAM FUM FUMARIC ACID HETNAM ALC 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID HETNAM 08M N~5~-(PYRAZIN-2-YLCARBONYL)-L-ORNITHINE HETNAM DAB 2,4-DIAMINOBUTYRIC ACID HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FUM C4 H4 O4 FORMUL 2 ALC C9 H17 N O2 FORMUL 2 08M C10 H14 N4 O3 FORMUL 2 DAB C4 H10 N2 O2 FORMUL 3 GOL 3(C3 H8 O3) FORMUL 4 SO4 5(O4 S 2-) FORMUL 11 HOH *325(H2 O) HELIX 1 1 PRO A 263 GLU A 265 5 3 HELIX 2 2 SER A 303 LYS A 315 1 13 HELIX 3 3 SER A 345 GLY A 352 1 8 HELIX 4 4 GLU A 353 LEU A 358 5 6 HELIX 5 5 ARG A 359 MET A 380 1 22 HELIX 6 6 ARG A 388 ALA A 390 5 3 HELIX 7 7 GLU A 396 LEU A 398 5 3 HELIX 8 8 LEU A 407 ILE A 411 5 5 HELIX 9 9 ASP A 413 ALA A 418 1 6 HELIX 10 10 PRO A 425 THR A 429 5 5 HELIX 11 11 ALA A 430 GLY A 437 1 8 HELIX 12 12 THR A 440 THR A 457 1 18 HELIX 13 13 VAL A 467 ARG A 477 1 11 HELIX 14 14 PRO A 488 TRP A 499 1 12 HELIX 15 15 ASP A 502 ARG A 506 5 5 HELIX 16 16 THR A 508 ASP A 518 1 11 HELIX 17 17 ASP A 518 THR A 523 1 6 SHEET 1 A 5 LEU A 267 GLN A 275 0 SHEET 2 A 5 GLY A 279 TRP A 286 -1 O MET A 283 N VAL A 271 SHEET 3 A 5 THR A 290 LEU A 297 -1 O THR A 296 N GLU A 280 SHEET 4 A 5 TYR A 335 THR A 338 -1 O ILE A 336 N LYS A 295 SHEET 5 A 5 LEU A 325 VAL A 329 -1 N TYR A 326 O VAL A 337 SHEET 1 B 2 ILE A 392 VAL A 394 0 SHEET 2 B 2 CYS A 400 VAL A 402 -1 O LYS A 401 N LEU A 393 LINK C FUM B 1 N ALC B 2 1555 1555 1.32 LINK C6 FUM B 1 N DAB B 5 1555 1555 1.32 LINK C ALC B 2 N PHE B 3 1555 1555 1.31 LINK C PHE B 3 N 08M B 4 1555 1555 1.33 LINK C 08M B 4 ND DAB B 5 1555 1555 1.31 CISPEP 1 GLU A 332 PRO A 333 0 -2.80 SITE 1 AC1 8 GLU A 280 THR A 296 LEU A 297 PRO A 333 SITE 2 AC1 8 GLY A 465 MET A 466 VAL A 467 HOH A 751 SITE 1 AC2 4 ARG A 264 GOL A 607 HOH A 783 HOH A 811 SITE 1 AC3 5 LYS A 272 LYS A 351 HOH A 899 HOH A 908 SITE 2 AC3 5 HOH A 994 SITE 1 AC4 5 HIS A 319 SER A 372 GLN A 513 HOH A 753 SITE 2 AC4 5 HOH A 921 SITE 1 AC5 7 TYR A 340 MET A 341 SER A 342 GLY A 395 SITE 2 AC5 7 GLU A 396 HOH A 831 HOH A 955 SITE 1 AC6 5 PRO A 488 GLU A 489 HOH A 711 HOH A 982 SITE 2 AC6 5 HOH A1004 SITE 1 AC7 5 PRO A 263 ARG A 264 GLU A 265 SO4 A 602 SITE 2 AC7 5 HOH A 885 SITE 1 AC8 4 SER A 303 PRO A 304 GLU A 305 HOH A 971 SITE 1 AC9 25 GLY A 274 GLN A 275 GLY A 276 CYS A 277 SITE 2 AC9 25 PHE A 278 GLY A 279 GLU A 280 VAL A 281 SITE 3 AC9 25 ALA A 293 LYS A 295 LEU A 297 GLU A 339 SITE 4 AC9 25 MET A 341 GLY A 344 ASP A 386 ARG A 388 SITE 5 AC9 25 LEU A 393 ASP A 404 ALA A 408 ILE A 411 SITE 6 AC9 25 HOH A 704 HOH A 706 HOH A 746 HOH A 953 SITE 7 AC9 25 HOH B 102 CRYST1 143.610 143.610 41.510 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006963 0.004020 0.000000 0.00000 SCALE2 0.000000 0.008041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024091 0.00000