HEADER TRANSFERASE/TRANSFERASE INHIBITOR 10-OCT-11 3U4W
TITLE SRC IN COMPLEX WITH DNA-TEMPLATED MACROCYCLIC INHIBITOR MC4B
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: SRC KINASE DOMAIN (UNP RESIDUES 259-533);
COMPND 5 SYNONYM: C-SRC KINASE, PROTO-ONCOGENE C-SRC, PP60C-SRC, P60-SRC;
COMPND 6 EC: 2.7.10.2;
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: MACROCYCLIC INHIBITOR MC4B;
COMPND 10 CHAIN: B;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS;
SOURCE 3 ORGANISM_COMMON: CHICKEN;
SOURCE 4 ORGANISM_TAXID: 9031;
SOURCE 5 GENE: SRC;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28;
SOURCE 11 MOL_ID: 2;
SOURCE 12 SYNTHETIC: YES
KEYWDS PROTEIN KINASE, SRC-LIKE INACTIVE CONFORMATION, TRANSFERASE-
KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR M.A.SEELIGER,D.R.LIU,G.GEORGHIOU,R.E.KLEINER,M.PULKOSKI-GROSS
REVDAT 7 09-OCT-24 3U4W 1 REMARK
REVDAT 6 15-NOV-23 3U4W 1 LINK ATOM
REVDAT 5 13-SEP-23 3U4W 1 REMARK
REVDAT 4 23-SEP-20 3U4W 1 REMARK LINK
REVDAT 3 04-APR-12 3U4W 1 JRNL
REVDAT 2 07-MAR-12 3U4W 1 JRNL
REVDAT 1 22-FEB-12 3U4W 0
JRNL AUTH G.GEORGHIOU,R.E.KLEINER,M.PULKOSKI-GROSS,D.R.LIU,
JRNL AUTH 2 M.A.SEELIGER
JRNL TITL HIGHLY SPECIFIC, BISUBSTRATE-COMPETITIVE SRC INHIBITORS FROM
JRNL TITL 2 DNA-TEMPLATED MACROCYCLES.
JRNL REF NAT.CHEM.BIOL. V. 8 366 2012
JRNL REFN ISSN 1552-4450
JRNL PMID 22344177
JRNL DOI 10.1038/NCHEMBIO.792
REMARK 2
REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.7.1_743
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.38
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 38853
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.163
REMARK 3 R VALUE (WORKING SET) : 0.162
REMARK 3 FREE R VALUE : 0.186
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.650
REMARK 3 FREE R VALUE TEST SET COUNT : 1418
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 39.3832 - 4.0924 1.00 3866 151 0.1786 0.1848
REMARK 3 2 4.0924 - 3.2487 1.00 3775 143 0.1423 0.1539
REMARK 3 3 3.2487 - 2.8382 1.00 3767 142 0.1536 0.2038
REMARK 3 4 2.8382 - 2.5787 1.00 3720 142 0.1626 0.1940
REMARK 3 5 2.5787 - 2.3939 1.00 3748 136 0.1605 0.1873
REMARK 3 6 2.3939 - 2.2528 1.00 3737 142 0.1567 0.1814
REMARK 3 7 2.2528 - 2.1400 1.00 3708 139 0.1624 0.1844
REMARK 3 8 2.1400 - 2.0468 1.00 3686 141 0.1691 0.1933
REMARK 3 9 2.0468 - 1.9681 1.00 3687 140 0.1731 0.2230
REMARK 3 10 1.9681 - 1.9000 1.00 3741 142 0.1901 0.2057
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.00
REMARK 3 SHRINKAGE RADIUS : 0.72
REMARK 3 K_SOL : 0.38
REMARK 3 B_SOL : 38.45
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.990
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.65
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.21380
REMARK 3 B22 (A**2) : 1.21380
REMARK 3 B33 (A**2) : -2.42760
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.007 2358
REMARK 3 ANGLE : 1.117 3190
REMARK 3 CHIRALITY : 0.072 334
REMARK 3 PLANARITY : 0.009 406
REMARK 3 DIHEDRAL : 20.395 902
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3U4W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-11.
REMARK 100 THE DEPOSITION ID IS D_1000068309.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 21-APR-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : NSLS
REMARK 200 BEAMLINE : X29A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.075
REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL
REMARK 200 SAGITTAL FOCUSING
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38862
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900
REMARK 200 RESOLUTION RANGE LOW (A) : 41.457
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 6.000
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.09800
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9
REMARK 200 DATA REDUNDANCY IN SHELL : 5.80
REMARK 200 R MERGE FOR SHELL (I) : 0.42100
REMARK 200 R SYM FOR SHELL (I) : 0.42100
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 2SRC
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 68.59
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 3% GLYCEROL, 200 MM AMMONIUM SULFATE,
REMARK 280 PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z
REMARK 290 3555 -X+Y,-X,Z
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z
REMARK 290 6555 -X,-X+Y,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 12620 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 917 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 986 LIES ON A SPECIAL POSITION.
REMARK 400
REMARK 400 COMPOUND
REMARK 400
REMARK 400 THE (2S,5S,8S,13S,16Z)-5-BENZYL-2-(CYCLOHEXYLMETHYL)-3,6,9,15,18-
REMARK 400 PENTAOXO-8-{3-[(PYRAZIN-2-YLCARBONYL)AMINO]PROPYL}-1,4,7,10,14-
REMARK 400 PENTAAZACYCLOOCTADEC-16-ENE-13-CARBOXYLIC ACID IS PEPTIDE-LIKE, A
REMARK 400 MEMBER OF INHIBITOR CLASS.
REMARK 400
REMARK 400 GROUP: 1
REMARK 400 NAME: (2S,5S,8S,13S,16Z)-5-BENZYL-2-(CYCLOHEXYLMETHYL)-3,6,9,15,
REMARK 400 18-PENTAOXO-8-{3-[(PYRAZIN-2-YLCARBONYL)AMINO]PROPYL}-1,4,7,
REMARK 400 10,14-PENTAAZACYCLOOCTADEC-16-ENE-13-CARBOXYLIC ACID
REMARK 400 CHAIN: B
REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER
REMARK 400 DESCRIPTION: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O7 FUM B 1 N DAB B 5 2.07
REMARK 500 OE1 GLN A 528 O HOH A 927 2.09
REMARK 500 O HOH A 742 O HOH A 863 2.12
REMARK 500 O HOH A 775 O HOH A 929 2.16
REMARK 500 O2 SO4 A 603 O HOH A 994 2.16
REMARK 500 O HOH A 928 O HOH A 932 2.18
REMARK 500 OE1 GLU A 504 O HOH A 924 2.18
REMARK 500 O HOH A 834 O HOH A 992 2.18
REMARK 500 O HOH A 936 O HOH A 941 2.19
REMARK 500 O HOH A 710 O HOH A 938 2.19
REMARK 500 OD2 ASP A 518 O HOH A 709 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 924 O HOH A 931 6555 2.08
REMARK 500 O HOH A 983 O HOH A 987 1554 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 FUM B 1 O - C - N ANGL. DEV. = -12.9 DEGREES
REMARK 500 ALC B 2 CA - C - N ANGL. DEV. = 30.2 DEGREES
REMARK 500 ALC B 2 O - C - N ANGL. DEV. = -18.4 DEGREES
REMARK 500 PHE B 3 C - N - CA ANGL. DEV. = 31.6 DEGREES
REMARK 500 PHE B 3 CA - C - O ANGL. DEV. = -16.0 DEGREES
REMARK 500 PHE B 3 CA - C - N ANGL. DEV. = 23.8 DEGREES
REMARK 500 PHE B 3 O - C - N ANGL. DEV. = -11.5 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 385 -19.64 89.89
REMARK 500 ASP A 413 131.34 -39.03
REMARK 500 ALC B 2 -63.94 -138.70
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY
REMARK 500
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 500 I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI ANGLE
REMARK 500 PHE A 405 10.24
REMARK 500 PHE B 3 -18.05
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 604
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 605
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 607
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 608
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF MACROCYCLIC
REMARK 800 INHIBITOR MC4B
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3U51 RELATED DB: PDB
DBREF 3U4W A 259 533 UNP P00523 SRC_CHICK 259 533
DBREF 3U4W B 1 5 PDB 3U4W 3U4W 1 5
SEQRES 1 A 275 ALA TRP GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL
SEQRES 2 A 275 LYS LEU GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY
SEQRES 3 A 275 THR TRP ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU
SEQRES 4 A 275 LYS PRO GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU
SEQRES 5 A 275 ALA GLN VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL
SEQRES 6 A 275 GLN LEU TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE
SEQRES 7 A 275 VAL THR GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE
SEQRES 8 A 275 LEU LYS GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN
SEQRES 9 A 275 LEU VAL ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA
SEQRES 10 A 275 TYR VAL GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG
SEQRES 11 A 275 ALA ALA ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS
SEQRES 12 A 275 VAL ALA ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN
SEQRES 13 A 275 GLU TYR THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS
SEQRES 14 A 275 TRP THR ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR
SEQRES 15 A 275 ILE LYS SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR
SEQRES 16 A 275 GLU LEU THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET
SEQRES 17 A 275 VAL ASN ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR
SEQRES 18 A 275 ARG MET PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS
SEQRES 19 A 275 ASP LEU MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU
SEQRES 20 A 275 ARG PRO THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP
SEQRES 21 A 275 TYR PHE THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU
SEQRES 22 A 275 ASN LEU
SEQRES 1 B 5 FUM ALC PHE 08M DAB
MODRES 3U4W ALC B 2 ALA 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID
MODRES 3U4W DAB B 5 ALA 2,4-DIAMINOBUTYRIC ACID
HET FUM B 1 6
HET ALC B 2 11
HET 08M B 4 16
HET DAB B 5 8
HET GOL A 601 6
HET SO4 A 602 5
HET SO4 A 603 5
HET SO4 A 604 5
HET SO4 A 605 5
HET SO4 A 606 5
HET GOL A 607 6
HET GOL A 608 6
HETNAM FUM FUMARIC ACID
HETNAM ALC 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID
HETNAM 08M N~5~-(PYRAZIN-2-YLCARBONYL)-L-ORNITHINE
HETNAM DAB 2,4-DIAMINOBUTYRIC ACID
HETNAM GOL GLYCEROL
HETNAM SO4 SULFATE ION
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 FUM C4 H4 O4
FORMUL 2 ALC C9 H17 N O2
FORMUL 2 08M C10 H14 N4 O3
FORMUL 2 DAB C4 H10 N2 O2
FORMUL 3 GOL 3(C3 H8 O3)
FORMUL 4 SO4 5(O4 S 2-)
FORMUL 11 HOH *325(H2 O)
HELIX 1 1 PRO A 263 GLU A 265 5 3
HELIX 2 2 SER A 303 LYS A 315 1 13
HELIX 3 3 SER A 345 GLY A 352 1 8
HELIX 4 4 GLU A 353 LEU A 358 5 6
HELIX 5 5 ARG A 359 MET A 380 1 22
HELIX 6 6 ARG A 388 ALA A 390 5 3
HELIX 7 7 GLU A 396 LEU A 398 5 3
HELIX 8 8 LEU A 407 ILE A 411 5 5
HELIX 9 9 ASP A 413 ALA A 418 1 6
HELIX 10 10 PRO A 425 THR A 429 5 5
HELIX 11 11 ALA A 430 GLY A 437 1 8
HELIX 12 12 THR A 440 THR A 457 1 18
HELIX 13 13 VAL A 467 ARG A 477 1 11
HELIX 14 14 PRO A 488 TRP A 499 1 12
HELIX 15 15 ASP A 502 ARG A 506 5 5
HELIX 16 16 THR A 508 ASP A 518 1 11
HELIX 17 17 ASP A 518 THR A 523 1 6
SHEET 1 A 5 LEU A 267 GLN A 275 0
SHEET 2 A 5 GLY A 279 TRP A 286 -1 O MET A 283 N VAL A 271
SHEET 3 A 5 THR A 290 LEU A 297 -1 O THR A 296 N GLU A 280
SHEET 4 A 5 TYR A 335 THR A 338 -1 O ILE A 336 N LYS A 295
SHEET 5 A 5 LEU A 325 VAL A 329 -1 N TYR A 326 O VAL A 337
SHEET 1 B 2 ILE A 392 VAL A 394 0
SHEET 2 B 2 CYS A 400 VAL A 402 -1 O LYS A 401 N LEU A 393
LINK C FUM B 1 N ALC B 2 1555 1555 1.32
LINK C6 FUM B 1 N DAB B 5 1555 1555 1.32
LINK C ALC B 2 N PHE B 3 1555 1555 1.31
LINK C PHE B 3 N 08M B 4 1555 1555 1.33
LINK C 08M B 4 ND DAB B 5 1555 1555 1.31
CISPEP 1 GLU A 332 PRO A 333 0 -2.80
SITE 1 AC1 8 GLU A 280 THR A 296 LEU A 297 PRO A 333
SITE 2 AC1 8 GLY A 465 MET A 466 VAL A 467 HOH A 751
SITE 1 AC2 4 ARG A 264 GOL A 607 HOH A 783 HOH A 811
SITE 1 AC3 5 LYS A 272 LYS A 351 HOH A 899 HOH A 908
SITE 2 AC3 5 HOH A 994
SITE 1 AC4 5 HIS A 319 SER A 372 GLN A 513 HOH A 753
SITE 2 AC4 5 HOH A 921
SITE 1 AC5 7 TYR A 340 MET A 341 SER A 342 GLY A 395
SITE 2 AC5 7 GLU A 396 HOH A 831 HOH A 955
SITE 1 AC6 5 PRO A 488 GLU A 489 HOH A 711 HOH A 982
SITE 2 AC6 5 HOH A1004
SITE 1 AC7 5 PRO A 263 ARG A 264 GLU A 265 SO4 A 602
SITE 2 AC7 5 HOH A 885
SITE 1 AC8 4 SER A 303 PRO A 304 GLU A 305 HOH A 971
SITE 1 AC9 25 GLY A 274 GLN A 275 GLY A 276 CYS A 277
SITE 2 AC9 25 PHE A 278 GLY A 279 GLU A 280 VAL A 281
SITE 3 AC9 25 ALA A 293 LYS A 295 LEU A 297 GLU A 339
SITE 4 AC9 25 MET A 341 GLY A 344 ASP A 386 ARG A 388
SITE 5 AC9 25 LEU A 393 ASP A 404 ALA A 408 ILE A 411
SITE 6 AC9 25 HOH A 704 HOH A 706 HOH A 746 HOH A 953
SITE 7 AC9 25 HOH B 102
CRYST1 143.610 143.610 41.510 90.00 90.00 120.00 P 3 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006963 0.004020 0.000000 0.00000
SCALE2 0.000000 0.008041 0.000000 0.00000
SCALE3 0.000000 0.000000 0.024091 0.00000