HEADER DNA BINDING PROTEIN 10-OCT-11 3U4Z TITLE CRYSTAL STRUCTURE OF THE TETRAHYMENA TELOMERASE PROCESSIVITY FACTOR TITLE 2 TEB1 OB-B COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELOMERASE-ASSOCIATED PROTEIN 82; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 375-483; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TETRAHYMENA THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 5911; SOURCE 4 GENE: TAP82; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TETRAHYMENA, TELOMERASE, TEB1, PROCESSIVITY FACTOR, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZENG,J.HUANG,Y.YANG,M.LEI REVDAT 4 28-FEB-24 3U4Z 1 REMARK REVDAT 3 08-NOV-17 3U4Z 1 REMARK REVDAT 2 23-MAY-12 3U4Z 1 JRNL REVDAT 1 14-DEC-11 3U4Z 0 JRNL AUTH Z.ZENG,B.MIN,J.HUANG,K.HONG,Y.YANG,K.COLLINS,M.LEI JRNL TITL STRUCTURAL BASIS FOR TETRAHYMENA TELOMERASE PROCESSIVITY JRNL TITL 2 FACTOR TEB1 BINDING TO SINGLE-STRANDED TELOMERIC-REPEAT DNA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 20357 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 22143754 JRNL DOI 10.1073/PNAS.1113624108 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 10695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.5938 - 4.5945 0.98 1287 153 0.1966 0.2469 REMARK 3 2 4.5945 - 3.6492 0.99 1236 170 0.1746 0.2147 REMARK 3 3 3.6492 - 3.1886 0.99 1294 131 0.2194 0.2566 REMARK 3 4 3.1886 - 2.8974 0.99 1262 139 0.2305 0.2650 REMARK 3 5 2.8974 - 2.6899 0.98 1245 164 0.2632 0.3239 REMARK 3 6 2.6899 - 2.5314 0.93 1221 127 0.2784 0.3171 REMARK 3 7 2.5314 - 2.4047 0.84 1069 109 0.2746 0.4050 REMARK 3 8 2.4047 - 2.3000 0.77 979 109 0.2643 0.3345 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.61 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 35.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.63650 REMARK 3 B22 (A**2) : 10.17550 REMARK 3 B33 (A**2) : -3.53890 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.14120 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1866 REMARK 3 ANGLE : 0.990 2520 REMARK 3 CHIRALITY : 0.075 280 REMARK 3 PLANARITY : 0.003 322 REMARK 3 DIHEDRAL : 18.600 704 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U4Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10731 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.26200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.6 M NA-FORMATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.92050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -34.55100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 400 32.86 -89.19 REMARK 500 SER A 401 74.07 -59.93 REMARK 500 ASP A 402 116.82 50.72 REMARK 500 PRO A 424 145.25 -36.00 REMARK 500 ASP A 425 -92.05 88.98 REMARK 500 ASN A 437 -4.75 81.85 REMARK 500 TYR A 450 -79.07 -111.00 REMARK 500 ASN A 451 61.94 -108.51 REMARK 500 ASP B 402 -118.93 70.17 REMARK 500 LYS B 403 26.11 -77.74 REMARK 500 CYS B 414 -174.24 -172.02 REMARK 500 PRO B 424 145.85 -39.09 REMARK 500 ASP B 425 -70.02 86.87 REMARK 500 ARG B 431 -89.57 -33.17 REMARK 500 ASP B 432 41.08 -98.44 REMARK 500 ASN B 437 -11.66 78.05 REMARK 500 ASP B 452 16.90 59.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U4V RELATED DB: PDB REMARK 900 RELATED ID: 3U50 RELATED DB: PDB DBREF 3U4Z A 375 483 UNP D2CVN6 D2CVN6_TETTH 375 483 DBREF 3U4Z B 375 483 UNP D2CVN6 D2CVN6_TETTH 375 483 SEQRES 1 A 109 THR LEU LEU ILE SER GLU VAL LEU LYS THR SER LYS GLN SEQRES 2 A 109 TYR LEU SER VAL LEU ALA GLN VAL VAL ASP ILE GLN SER SEQRES 3 A 109 SER ASP LYS ASN ILE ARG LEU LYS ILE CYS ASP ASN SER SEQRES 4 A 109 CYS ASN GLN GLU LEU LYS VAL VAL ILE PHE PRO ASP LEU SEQRES 5 A 109 CYS TYR GLU TRP ARG ASP LYS PHE SER ILE ASN LYS TRP SEQRES 6 A 109 TYR TYR PHE ASN GLU PHE VAL ARG GLN ILE TYR ASN ASP SEQRES 7 A 109 GLU VAL GLN LEU LYS ASN ASN ILE HIS SER SER ILE LYS SEQRES 8 A 109 GLU SER ASP ASP GLN ARG LYS VAL ILE THR TYR ASN GLN SEQRES 9 A 109 GLU GLN GLY VAL PHE SEQRES 1 B 109 THR LEU LEU ILE SER GLU VAL LEU LYS THR SER LYS GLN SEQRES 2 B 109 TYR LEU SER VAL LEU ALA GLN VAL VAL ASP ILE GLN SER SEQRES 3 B 109 SER ASP LYS ASN ILE ARG LEU LYS ILE CYS ASP ASN SER SEQRES 4 B 109 CYS ASN GLN GLU LEU LYS VAL VAL ILE PHE PRO ASP LEU SEQRES 5 B 109 CYS TYR GLU TRP ARG ASP LYS PHE SER ILE ASN LYS TRP SEQRES 6 B 109 TYR TYR PHE ASN GLU PHE VAL ARG GLN ILE TYR ASN ASP SEQRES 7 B 109 GLU VAL GLN LEU LYS ASN ASN ILE HIS SER SER ILE LYS SEQRES 8 B 109 GLU SER ASP ASP GLN ARG LYS VAL ILE THR TYR ASN GLN SEQRES 9 B 109 GLU GLN GLY VAL PHE FORMUL 3 HOH *46(H2 O) HELIX 1 1 LEU A 377 LEU A 382 1 6 HELIX 2 2 ASP A 425 ARG A 431 1 7 HELIX 3 3 GLU A 479 PHE A 483 5 5 HELIX 4 4 LEU B 377 THR B 384 1 8 HELIX 5 5 ASP B 425 ARG B 431 1 7 HELIX 6 6 GLU B 479 PHE B 483 5 5 SHEET 1 A 7 SER A 463 GLU A 466 0 SHEET 2 A 7 TRP A 439 ILE A 449 -1 N TYR A 441 O LYS A 465 SHEET 3 A 7 VAL A 454 LYS A 457 -1 O GLN A 455 N GLN A 448 SHEET 4 A 7 LEU A 418 ILE A 422 1 N VAL A 421 O LEU A 456 SHEET 5 A 7 ILE A 405 CYS A 410 -1 N ILE A 405 O ILE A 422 SHEET 6 A 7 TYR A 388 GLN A 399 -1 N GLN A 394 O CYS A 410 SHEET 7 A 7 TRP A 439 ILE A 449 -1 O PHE A 442 N VAL A 391 SHEET 1 B 7 SER B 463 GLU B 466 0 SHEET 2 B 7 TRP B 439 TYR B 450 -1 N TYR B 441 O LYS B 465 SHEET 3 B 7 GLU B 453 LYS B 457 -1 O GLN B 455 N GLN B 448 SHEET 4 B 7 LEU B 418 ILE B 422 1 N VAL B 421 O LEU B 456 SHEET 5 B 7 ILE B 405 CYS B 410 -1 N LEU B 407 O VAL B 420 SHEET 6 B 7 TYR B 388 SER B 400 -1 N GLN B 394 O CYS B 410 SHEET 7 B 7 TRP B 439 TYR B 450 -1 O PHE B 445 N LEU B 389 CRYST1 34.551 65.841 57.845 90.00 100.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028943 0.000000 0.005109 0.00000 SCALE2 0.000000 0.015188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017555 0.00000