HEADER HYDROLASE 11-OCT-11 3U5Y TITLE STRUCTURES OF ALKALOID BIOSYNTHETIC GLUCOSIDASES DECODE SUBSTRATE TITLE 2 SPECIFICITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAUCAFFRICINE-O-BETA-D-GLUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-513; COMPND 5 EC: 3.2.1.125; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RAUVOLFIA SERPENTINA; SOURCE 3 ORGANISM_COMMON: DEVILPEPPER; SOURCE 4 ORGANISM_TAXID: 4060; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.XIA,M.RUPPERT,M.WANG,S.PANJIKAR,H.LIN,C.RAJENDRAN,L.BARLEBEN, AUTHOR 2 J.STOECKIGT REVDAT 4 20-MAR-24 3U5Y 1 HETSYN REVDAT 3 29-JUL-20 3U5Y 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 SITE ATOM REVDAT 2 10-JUL-13 3U5Y 1 JRNL REVDAT 1 30-NOV-11 3U5Y 0 JRNL AUTH L.XIA,M.RUPPERT,M.WANG,S.PANJIKAR,H.LIN,C.RAJENDRAN, JRNL AUTH 2 L.BARLEBEN,J.STOCKIGT JRNL TITL STRUCTURES OF ALKALOID BIOSYNTHETIC GLUCOSIDASES DECODE JRNL TITL 2 SUBSTRATE SPECIFICITY. JRNL REF ACS CHEM.BIOL. V. 7 226 2012 JRNL REFN ISSN 1554-8929 JRNL PMID 22004291 JRNL DOI 10.1021/CB200267W REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 62424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3271 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4364 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.14000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -2.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.326 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7812 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10606 ; 1.398 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 934 ; 5.793 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 394 ;32.344 ;23.655 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1200 ;16.779 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;21.996 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1084 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6128 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4642 ; 0.714 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7442 ; 1.402 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3170 ; 2.142 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3164 ; 3.532 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3U5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62424 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.46350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.60150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.39900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.46350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.60150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.39900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.46350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.60150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.39900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.46350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.60150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.39900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 120170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -154.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 104.92700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 129.20300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 104.92700 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 129.20300 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 VAL A 8 REMARK 465 ILE A 9 REMARK 465 ASP A 10 REMARK 465 SER A 11 REMARK 465 ASN A 12 REMARK 465 THR A 207 REMARK 465 SER A 208 REMARK 465 PRO A 209 REMARK 465 GLU A 210 REMARK 465 HIS A 211 REMARK 465 VAL A 212 REMARK 465 ASN A 213 REMARK 465 HIS A 214 REMARK 465 PRO A 215 REMARK 465 THR A 216 REMARK 465 VAL A 217 REMARK 465 GLN A 218 REMARK 465 HIS A 219 REMARK 465 ARG A 220 REMARK 465 CYS A 221 REMARK 465 SER A 222 REMARK 465 THR A 223 REMARK 465 VAL A 224 REMARK 465 ALA A 225 REMARK 465 PRO A 226 REMARK 465 GLN A 227 REMARK 465 CYS A 228 REMARK 465 ILE A 229 REMARK 465 CYS A 230 REMARK 465 THR A 357 REMARK 465 ASN A 358 REMARK 465 SER A 359 REMARK 465 SER A 360 REMARK 465 GLY A 361 REMARK 465 SER A 362 REMARK 465 ASN A 363 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 ALA B 7 REMARK 465 VAL B 8 REMARK 465 ILE B 9 REMARK 465 ASP B 10 REMARK 465 SER B 11 REMARK 465 ASN B 12 REMARK 465 THR B 207 REMARK 465 SER B 208 REMARK 465 PRO B 209 REMARK 465 GLU B 210 REMARK 465 HIS B 211 REMARK 465 VAL B 212 REMARK 465 ASN B 213 REMARK 465 HIS B 214 REMARK 465 PRO B 215 REMARK 465 THR B 216 REMARK 465 VAL B 217 REMARK 465 GLN B 218 REMARK 465 HIS B 219 REMARK 465 ARG B 220 REMARK 465 CYS B 221 REMARK 465 SER B 222 REMARK 465 THR B 223 REMARK 465 VAL B 224 REMARK 465 ALA B 225 REMARK 465 PRO B 226 REMARK 465 GLN B 227 REMARK 465 CYS B 228 REMARK 465 ILE B 229 REMARK 465 CYS B 230 REMARK 465 THR B 357 REMARK 465 ASN B 358 REMARK 465 SER B 359 REMARK 465 SER B 360 REMARK 465 GLY B 361 REMARK 465 SER B 362 REMARK 465 ASN B 363 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 382 O HOH A 575 2.06 REMARK 500 O LEU B 155 CE1 HIS B 245 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 71 -130.25 52.93 REMARK 500 TRP A 141 -5.10 80.79 REMARK 500 TYR A 151 25.03 -145.30 REMARK 500 THR A 232 -12.94 -165.09 REMARK 500 PHE A 261 -32.22 -150.78 REMARK 500 SER A 285 100.52 -46.94 REMARK 500 MET A 299 -62.69 -106.58 REMARK 500 TYR A 347 -57.40 -120.38 REMARK 500 ARG A 379 64.73 -110.68 REMARK 500 ASN A 380 39.56 100.60 REMARK 500 SER A 388 -155.42 -94.18 REMARK 500 ASN A 421 121.52 -178.63 REMARK 500 ASN A 428 99.16 -178.46 REMARK 500 ASP A 439 71.59 -105.52 REMARK 500 ASP A 459 -9.90 -58.40 REMARK 500 TRP A 477 -118.08 58.19 REMARK 500 ASP B 60 -8.87 -59.36 REMARK 500 ALA B 71 -131.03 54.23 REMARK 500 TRP B 141 -5.58 77.77 REMARK 500 ASN B 234 93.68 -172.20 REMARK 500 THR B 237 -57.09 -122.79 REMARK 500 PHE B 261 -33.17 -133.73 REMARK 500 SER B 285 89.22 -28.72 REMARK 500 SER B 328 162.17 -49.25 REMARK 500 SER B 366 138.38 -171.50 REMARK 500 SER B 388 -159.88 -111.87 REMARK 500 ASN B 421 122.04 -175.18 REMARK 500 ASN B 428 98.18 -174.72 REMARK 500 ASP B 439 73.54 -105.98 REMARK 500 ASP B 459 3.37 -69.94 REMARK 500 TRP B 477 -120.35 62.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U57 RELATED DB: PDB REMARK 900 RELATED ID: 3U5U RELATED DB: PDB DBREF 3U5Y A 1 513 UNP Q9SPP9 Q9SPP9_RAUSE 1 513 DBREF 3U5Y B 1 513 UNP Q9SPP9 Q9SPP9_RAUSE 1 513 SEQADV 3U5Y GLN A 186 UNP Q9SPP9 GLU 186 ENGINEERED MUTATION SEQADV 3U5Y GLN B 186 UNP Q9SPP9 GLU 186 ENGINEERED MUTATION SEQRES 1 A 513 MET ALA THR GLN SER SER ALA VAL ILE ASP SER ASN ASP SEQRES 2 A 513 ALA THR ARG ILE SER ARG SER ASP PHE PRO ALA ASP PHE SEQRES 3 A 513 ILE MET GLY THR GLY SER SER ALA TYR GLN ILE GLU GLY SEQRES 4 A 513 GLY ALA ARG ASP GLY GLY ARG GLY PRO SER ILE TRP ASP SEQRES 5 A 513 THR PHE THR HIS ARG ARG PRO ASP MET ILE ARG GLY GLY SEQRES 6 A 513 THR ASN GLY ASP VAL ALA VAL ASP SER TYR HIS LEU TYR SEQRES 7 A 513 LYS GLU ASP VAL ASN ILE LEU LYS ASN LEU GLY LEU ASP SEQRES 8 A 513 ALA TYR ARG PHE SER ILE SER TRP SER ARG VAL LEU PRO SEQRES 9 A 513 GLY GLY ARG LEU SER GLY GLY VAL ASN LYS GLU GLY ILE SEQRES 10 A 513 ASN TYR TYR ASN ASN LEU ILE ASP GLY LEU LEU ALA ASN SEQRES 11 A 513 GLY ILE LYS PRO PHE VAL THR LEU PHE HIS TRP ASP VAL SEQRES 12 A 513 PRO GLN ALA LEU GLU ASP GLU TYR GLY GLY PHE LEU SER SEQRES 13 A 513 PRO ARG ILE VAL ASP ASP PHE CYS GLU TYR ALA GLU LEU SEQRES 14 A 513 CYS PHE TRP GLU PHE GLY ASP ARG VAL LYS HIS TRP MET SEQRES 15 A 513 THR LEU ASN GLN PRO TRP THR PHE SER VAL HIS GLY TYR SEQRES 16 A 513 ALA THR GLY LEU TYR ALA PRO GLY ARG GLY ARG THR SER SEQRES 17 A 513 PRO GLU HIS VAL ASN HIS PRO THR VAL GLN HIS ARG CYS SEQRES 18 A 513 SER THR VAL ALA PRO GLN CYS ILE CYS SER THR GLY ASN SEQRES 19 A 513 PRO GLY THR GLU PRO TYR TRP VAL THR HIS HIS LEU LEU SEQRES 20 A 513 LEU ALA HIS ALA ALA ALA VAL GLU LEU TYR LYS ASN LYS SEQRES 21 A 513 PHE GLN ARG GLY GLN GLU GLY GLN ILE GLY ILE SER HIS SEQRES 22 A 513 ALA THR GLN TRP MET GLU PRO TRP ASP GLU ASN SER ALA SEQRES 23 A 513 SER ASP VAL GLU ALA ALA ALA ARG ALA LEU ASP PHE MET SEQRES 24 A 513 LEU GLY TRP PHE MET GLU PRO ILE THR SER GLY ASP TYR SEQRES 25 A 513 PRO LYS SER MET LYS LYS PHE VAL GLY SER ARG LEU PRO SEQRES 26 A 513 LYS PHE SER PRO GLU GLN SER LYS MET LEU LYS GLY SER SEQRES 27 A 513 TYR ASP PHE VAL GLY LEU ASN TYR TYR THR ALA SER TYR SEQRES 28 A 513 VAL THR ASN ALA SER THR ASN SER SER GLY SER ASN ASN SEQRES 29 A 513 PHE SER TYR ASN THR ASP ILE HIS VAL THR TYR GLU THR SEQRES 30 A 513 ASP ARG ASN GLY VAL PRO ILE GLY PRO GLN SER GLY SER SEQRES 31 A 513 ASP TRP LEU LEU ILE TYR PRO GLU GLY ILE ARG LYS ILE SEQRES 32 A 513 LEU VAL TYR THR LYS LYS THR TYR ASN VAL PRO LEU ILE SEQRES 33 A 513 TYR VAL THR GLU ASN GLY VAL ASP ASP VAL LYS ASN THR SEQRES 34 A 513 ASN LEU THR LEU SER GLU ALA ARG LYS ASP SER MET ARG SEQRES 35 A 513 LEU LYS TYR LEU GLN ASP HIS ILE PHE ASN VAL ARG GLN SEQRES 36 A 513 ALA MET ASN ASP GLY VAL ASN VAL LYS GLY TYR PHE ALA SEQRES 37 A 513 TRP SER LEU LEU ASP ASN PHE GLU TRP GLY GLU GLY TYR SEQRES 38 A 513 GLY VAL ARG PHE GLY ILE ILE HIS ILE ASP TYR ASN ASP SEQRES 39 A 513 ASN PHE ALA ARG TYR PRO LYS ASP SER ALA VAL TRP LEU SEQRES 40 A 513 MET ASN SER PHE HIS LYS SEQRES 1 B 513 MET ALA THR GLN SER SER ALA VAL ILE ASP SER ASN ASP SEQRES 2 B 513 ALA THR ARG ILE SER ARG SER ASP PHE PRO ALA ASP PHE SEQRES 3 B 513 ILE MET GLY THR GLY SER SER ALA TYR GLN ILE GLU GLY SEQRES 4 B 513 GLY ALA ARG ASP GLY GLY ARG GLY PRO SER ILE TRP ASP SEQRES 5 B 513 THR PHE THR HIS ARG ARG PRO ASP MET ILE ARG GLY GLY SEQRES 6 B 513 THR ASN GLY ASP VAL ALA VAL ASP SER TYR HIS LEU TYR SEQRES 7 B 513 LYS GLU ASP VAL ASN ILE LEU LYS ASN LEU GLY LEU ASP SEQRES 8 B 513 ALA TYR ARG PHE SER ILE SER TRP SER ARG VAL LEU PRO SEQRES 9 B 513 GLY GLY ARG LEU SER GLY GLY VAL ASN LYS GLU GLY ILE SEQRES 10 B 513 ASN TYR TYR ASN ASN LEU ILE ASP GLY LEU LEU ALA ASN SEQRES 11 B 513 GLY ILE LYS PRO PHE VAL THR LEU PHE HIS TRP ASP VAL SEQRES 12 B 513 PRO GLN ALA LEU GLU ASP GLU TYR GLY GLY PHE LEU SER SEQRES 13 B 513 PRO ARG ILE VAL ASP ASP PHE CYS GLU TYR ALA GLU LEU SEQRES 14 B 513 CYS PHE TRP GLU PHE GLY ASP ARG VAL LYS HIS TRP MET SEQRES 15 B 513 THR LEU ASN GLN PRO TRP THR PHE SER VAL HIS GLY TYR SEQRES 16 B 513 ALA THR GLY LEU TYR ALA PRO GLY ARG GLY ARG THR SER SEQRES 17 B 513 PRO GLU HIS VAL ASN HIS PRO THR VAL GLN HIS ARG CYS SEQRES 18 B 513 SER THR VAL ALA PRO GLN CYS ILE CYS SER THR GLY ASN SEQRES 19 B 513 PRO GLY THR GLU PRO TYR TRP VAL THR HIS HIS LEU LEU SEQRES 20 B 513 LEU ALA HIS ALA ALA ALA VAL GLU LEU TYR LYS ASN LYS SEQRES 21 B 513 PHE GLN ARG GLY GLN GLU GLY GLN ILE GLY ILE SER HIS SEQRES 22 B 513 ALA THR GLN TRP MET GLU PRO TRP ASP GLU ASN SER ALA SEQRES 23 B 513 SER ASP VAL GLU ALA ALA ALA ARG ALA LEU ASP PHE MET SEQRES 24 B 513 LEU GLY TRP PHE MET GLU PRO ILE THR SER GLY ASP TYR SEQRES 25 B 513 PRO LYS SER MET LYS LYS PHE VAL GLY SER ARG LEU PRO SEQRES 26 B 513 LYS PHE SER PRO GLU GLN SER LYS MET LEU LYS GLY SER SEQRES 27 B 513 TYR ASP PHE VAL GLY LEU ASN TYR TYR THR ALA SER TYR SEQRES 28 B 513 VAL THR ASN ALA SER THR ASN SER SER GLY SER ASN ASN SEQRES 29 B 513 PHE SER TYR ASN THR ASP ILE HIS VAL THR TYR GLU THR SEQRES 30 B 513 ASP ARG ASN GLY VAL PRO ILE GLY PRO GLN SER GLY SER SEQRES 31 B 513 ASP TRP LEU LEU ILE TYR PRO GLU GLY ILE ARG LYS ILE SEQRES 32 B 513 LEU VAL TYR THR LYS LYS THR TYR ASN VAL PRO LEU ILE SEQRES 33 B 513 TYR VAL THR GLU ASN GLY VAL ASP ASP VAL LYS ASN THR SEQRES 34 B 513 ASN LEU THR LEU SER GLU ALA ARG LYS ASP SER MET ARG SEQRES 35 B 513 LEU LYS TYR LEU GLN ASP HIS ILE PHE ASN VAL ARG GLN SEQRES 36 B 513 ALA MET ASN ASP GLY VAL ASN VAL LYS GLY TYR PHE ALA SEQRES 37 B 513 TRP SER LEU LEU ASP ASN PHE GLU TRP GLY GLU GLY TYR SEQRES 38 B 513 GLY VAL ARG PHE GLY ILE ILE HIS ILE ASP TYR ASN ASP SEQRES 39 B 513 ASN PHE ALA ARG TYR PRO LYS ASP SER ALA VAL TRP LEU SEQRES 40 B 513 MET ASN SER PHE HIS LYS HET SCG A1001 27 HET SCG B1001 27 HET CL B 514 1 HET CL B 515 1 HETNAM SCG SECOLOGANIN HETNAM CL CHLORIDE ION HETSYN SCG METHYL (2S,3R,4S)-2-(BETA-D-GLUCOPYRANOSYLOXY)-4-(2- HETSYN 2 SCG OXOETHYL)-3-VINYL-3,4-DIHYDRO-2H-PYRAN-5-CARBOXYLATE FORMUL 3 SCG 2(C17 H24 O10) FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *147(H2 O) HELIX 1 1 ASP A 13 ILE A 17 5 5 HELIX 2 2 SER A 18 PHE A 22 5 5 HELIX 3 3 SER A 33 GLU A 38 1 6 HELIX 4 4 SER A 49 ARG A 58 1 10 HELIX 5 5 PRO A 59 THR A 66 5 8 HELIX 6 6 ASP A 73 GLY A 89 1 17 HELIX 7 7 SER A 98 LEU A 103 1 6 HELIX 8 8 ARG A 107 GLY A 111 5 5 HELIX 9 9 ASN A 113 ASN A 130 1 18 HELIX 10 10 PRO A 144 GLY A 152 1 9 HELIX 11 11 GLY A 153 PRO A 157 5 5 HELIX 12 12 ARG A 158 GLY A 175 1 18 HELIX 13 13 GLN A 186 ALA A 196 1 11 HELIX 14 14 THR A 237 PHE A 261 1 25 HELIX 15 15 PHE A 261 GLU A 266 1 6 HELIX 16 16 SER A 285 LEU A 300 1 16 HELIX 17 17 LEU A 300 GLU A 305 1 6 HELIX 18 18 GLU A 305 GLY A 310 1 6 HELIX 19 19 PRO A 313 GLY A 321 1 9 HELIX 20 20 SER A 322 LEU A 324 5 3 HELIX 21 21 SER A 328 LYS A 336 1 9 HELIX 22 22 SER A 366 ILE A 371 1 6 HELIX 23 23 PRO A 397 ASN A 412 1 16 HELIX 24 24 THR A 432 ARG A 437 1 6 HELIX 25 25 ASP A 439 ASP A 459 1 21 HELIX 26 26 GLU A 476 GLY A 480 5 5 HELIX 27 27 LYS A 501 HIS A 512 1 12 HELIX 28 28 ASP B 13 ILE B 17 5 5 HELIX 29 29 SER B 18 PHE B 22 5 5 HELIX 30 30 SER B 33 GLU B 38 1 6 HELIX 31 31 SER B 49 ARG B 58 1 10 HELIX 32 32 PRO B 59 THR B 66 5 8 HELIX 33 33 ASP B 73 GLY B 89 1 17 HELIX 34 34 SER B 98 LEU B 103 1 6 HELIX 35 35 ARG B 107 GLY B 111 5 5 HELIX 36 36 ASN B 113 ASN B 130 1 18 HELIX 37 37 PRO B 144 GLY B 152 1 9 HELIX 38 38 ARG B 158 GLY B 175 1 18 HELIX 39 39 GLN B 186 ALA B 196 1 11 HELIX 40 40 THR B 237 PHE B 261 1 25 HELIX 41 41 PHE B 261 GLU B 266 1 6 HELIX 42 42 SER B 287 PHE B 298 1 12 HELIX 43 43 LEU B 300 GLU B 305 1 6 HELIX 44 44 GLU B 305 GLY B 310 1 6 HELIX 45 45 PRO B 313 GLY B 321 1 9 HELIX 46 46 SER B 322 LEU B 324 5 3 HELIX 47 47 SER B 328 LYS B 336 1 9 HELIX 48 48 SER B 366 ILE B 371 1 6 HELIX 49 49 PRO B 397 ASN B 412 1 16 HELIX 50 50 THR B 432 ARG B 437 1 6 HELIX 51 51 ASP B 439 ASP B 459 1 21 HELIX 52 52 GLU B 476 GLY B 480 5 5 HELIX 53 53 LYS B 501 HIS B 512 1 12 SHEET 1 A10 VAL A 373 GLU A 376 0 SHEET 2 A10 PHE A 341 ASN A 354 -1 N THR A 353 O THR A 374 SHEET 3 A10 ILE A 416 GLU A 420 1 O TYR A 417 N LEU A 344 SHEET 4 A10 VAL A 463 PHE A 467 1 O LYS A 464 N ILE A 416 SHEET 5 A10 ILE A 27 GLY A 31 1 N ILE A 27 O TYR A 466 SHEET 6 A10 ALA A 92 SER A 96 1 O ARG A 94 N THR A 30 SHEET 7 A10 LYS A 133 PHE A 139 1 O PHE A 135 N TYR A 93 SHEET 8 A10 HIS A 180 ASN A 185 1 O MET A 182 N LEU A 138 SHEET 9 A10 GLN A 268 PRO A 280 1 O GLN A 268 N TRP A 181 SHEET 10 A10 PHE A 341 ASN A 354 1 O SER A 350 N GLU A 279 SHEET 1 B 2 ILE A 488 ILE A 490 0 SHEET 2 B 2 ARG A 498 PRO A 500 -1 O TYR A 499 N HIS A 489 SHEET 1 C10 VAL B 373 GLU B 376 0 SHEET 2 C10 PHE B 341 ASN B 354 -1 N THR B 353 O THR B 374 SHEET 3 C10 ILE B 416 GLU B 420 1 O TYR B 417 N LEU B 344 SHEET 4 C10 VAL B 463 TRP B 469 1 O LYS B 464 N ILE B 416 SHEET 5 C10 ILE B 27 GLY B 31 1 N GLY B 29 O ALA B 468 SHEET 6 C10 ALA B 92 SER B 96 1 O ARG B 94 N THR B 30 SHEET 7 C10 LYS B 133 PHE B 139 1 O PHE B 135 N TYR B 93 SHEET 8 C10 HIS B 180 ASN B 185 1 O MET B 182 N LEU B 138 SHEET 9 C10 GLN B 268 PRO B 280 1 O GLN B 268 N TRP B 181 SHEET 10 C10 PHE B 341 ASN B 354 1 O VAL B 352 N GLU B 279 SHEET 1 D 2 ASP B 378 ARG B 379 0 SHEET 2 D 2 VAL B 382 PRO B 383 -1 O VAL B 382 N ARG B 379 SHEET 1 E 2 ILE B 488 ILE B 490 0 SHEET 2 E 2 ARG B 498 PRO B 500 -1 O TYR B 499 N HIS B 489 CISPEP 1 ALA A 201 PRO A 202 0 5.33 CISPEP 2 TRP A 469 SER A 470 0 -5.23 CISPEP 3 ALA B 201 PRO B 202 0 3.66 CISPEP 4 TRP B 469 SER B 470 0 -7.22 CRYST1 104.927 129.203 216.798 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009530 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004613 0.00000