data_3U7G # _entry.id 3U7G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3U7G NDB NA1350 RCSB RCSB068401 WWPDB D_1000068401 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YJ5 . unspecified PDB 3U7E . unspecified PDB 3U7f . unspecified PDB 3U7h . unspecified # _pdbx_database_status.entry_id 3U7G _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-10-13 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Coquelle, N.' 1 'Havali, Z.' 2 'Bernstein, N.' 3 'Green, R.' 4 'Glover, J.N.M.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural basis for the phosphatase activity of polynucleotide kinase/phosphatase on single- and double-stranded DNA substrates.' Proc.Natl.Acad.Sci.USA 108 21022 21027 2011 PNASA6 US 0027-8424 0040 ? 22171004 10.1073/pnas.1112036108 1 'The molecular architecture of the mammalian DNA repair enzyme, polynucleotide kinase.' Mol.Cell 17 657 670 2005 MOCEFL US 1097-2765 2168 ? 15749016 10.1016/j.molcel.2005.02.012 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Coquelle, N.' 1 primary 'Havali-Shahriari, Z.' 2 primary 'Bernstein, N.' 3 primary 'Green, R.' 4 primary 'Glover, J.N.' 5 1 'Bernstein, N.K.' 6 1 'Williams, R.S.' 7 1 'Rakovszky, M.L.' 8 1 'Cui, D.' 9 1 'Green, R.' 10 1 'Karimi-Busheri, F.' 11 1 'Mani, R.S.' 12 1 'Galicia, S.' 13 1 'Koch, C.A.' 14 1 'Cass, C.E.' 15 1 'Durocher, D.' 16 1 'Weinfeld, M.' 17 1 'Glover, J.N.' 18 # _cell.length_a 77.160 _cell.length_b 43.030 _cell.length_c 127.270 _cell.angle_alpha 90.000 _cell.angle_beta 107.120 _cell.angle_gamma 90.000 _cell.entry_id 3U7G _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3U7G _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bifunctional polynucleotide phosphatase/kinase' 42188.539 1 '3.1.3.32, 2.7.1.78' D170A ? ? 2 polymer syn DNA 1454.999 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 4 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 6 water nat water 18.015 201 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;DNA 5'-kinase/3'-phosphatase, Polynucleotide kinase-3'-phosphatase, Polynucleotide 3'-phosphatase, 2'(3')-polynucleotidase, Polynucleotide 5'-hydroxyl-kinase ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;LGWESLKKLLVFTASGVKPQGKVAAFALDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQ(MSE) GIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSG(MSE)WDHLQEQANEGIPISVEDSVFVGDAAGRLAN WAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKWPAARFELPAFDPRTISSAGPLYLPESSSLLSPNPEVVVAVGFPGA GKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQ ARHNNRFRE(MSE)TDPSHAPVSD(MSE)V(MSE)FSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFSEG ; ;LGWESLKKLLVFTASGVKPQGKVAAFALDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGR GKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRKKK DFSCADRLFALNVGLPFATPEEFFLKWPAARFELPAFDPRTISSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQE HLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR EMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFSEG ; A ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DC)(DT)(DA)' TCCTA X ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 GLY n 1 3 TRP n 1 4 GLU n 1 5 SER n 1 6 LEU n 1 7 LYS n 1 8 LYS n 1 9 LEU n 1 10 LEU n 1 11 VAL n 1 12 PHE n 1 13 THR n 1 14 ALA n 1 15 SER n 1 16 GLY n 1 17 VAL n 1 18 LYS n 1 19 PRO n 1 20 GLN n 1 21 GLY n 1 22 LYS n 1 23 VAL n 1 24 ALA n 1 25 ALA n 1 26 PHE n 1 27 ALA n 1 28 LEU n 1 29 ASP n 1 30 GLY n 1 31 THR n 1 32 LEU n 1 33 ILE n 1 34 THR n 1 35 THR n 1 36 ARG n 1 37 SER n 1 38 GLY n 1 39 LYS n 1 40 VAL n 1 41 PHE n 1 42 PRO n 1 43 THR n 1 44 SER n 1 45 PRO n 1 46 SER n 1 47 ASP n 1 48 TRP n 1 49 ARG n 1 50 ILE n 1 51 LEU n 1 52 TYR n 1 53 PRO n 1 54 GLU n 1 55 ILE n 1 56 PRO n 1 57 LYS n 1 58 LYS n 1 59 LEU n 1 60 GLN n 1 61 GLU n 1 62 LEU n 1 63 ALA n 1 64 ALA n 1 65 GLU n 1 66 GLY n 1 67 TYR n 1 68 LYS n 1 69 LEU n 1 70 VAL n 1 71 ILE n 1 72 PHE n 1 73 THR n 1 74 ASN n 1 75 GLN n 1 76 MSE n 1 77 GLY n 1 78 ILE n 1 79 GLY n 1 80 ARG n 1 81 GLY n 1 82 LYS n 1 83 LEU n 1 84 PRO n 1 85 ALA n 1 86 GLU n 1 87 VAL n 1 88 PHE n 1 89 LYS n 1 90 GLY n 1 91 LYS n 1 92 VAL n 1 93 GLU n 1 94 ALA n 1 95 VAL n 1 96 LEU n 1 97 GLU n 1 98 LYS n 1 99 LEU n 1 100 GLY n 1 101 VAL n 1 102 PRO n 1 103 PHE n 1 104 GLN n 1 105 VAL n 1 106 LEU n 1 107 VAL n 1 108 ALA n 1 109 THR n 1 110 HIS n 1 111 ALA n 1 112 GLY n 1 113 LEU n 1 114 ASN n 1 115 ARG n 1 116 LYS n 1 117 PRO n 1 118 VAL n 1 119 SER n 1 120 GLY n 1 121 MSE n 1 122 TRP n 1 123 ASP n 1 124 HIS n 1 125 LEU n 1 126 GLN n 1 127 GLU n 1 128 GLN n 1 129 ALA n 1 130 ASN n 1 131 GLU n 1 132 GLY n 1 133 ILE n 1 134 PRO n 1 135 ILE n 1 136 SER n 1 137 VAL n 1 138 GLU n 1 139 ASP n 1 140 SER n 1 141 VAL n 1 142 PHE n 1 143 VAL n 1 144 GLY n 1 145 ASP n 1 146 ALA n 1 147 ALA n 1 148 GLY n 1 149 ARG n 1 150 LEU n 1 151 ALA n 1 152 ASN n 1 153 TRP n 1 154 ALA n 1 155 PRO n 1 156 GLY n 1 157 ARG n 1 158 LYS n 1 159 LYS n 1 160 LYS n 1 161 ASP n 1 162 PHE n 1 163 SER n 1 164 CYS n 1 165 ALA n 1 166 ASP n 1 167 ARG n 1 168 LEU n 1 169 PHE n 1 170 ALA n 1 171 LEU n 1 172 ASN n 1 173 VAL n 1 174 GLY n 1 175 LEU n 1 176 PRO n 1 177 PHE n 1 178 ALA n 1 179 THR n 1 180 PRO n 1 181 GLU n 1 182 GLU n 1 183 PHE n 1 184 PHE n 1 185 LEU n 1 186 LYS n 1 187 TRP n 1 188 PRO n 1 189 ALA n 1 190 ALA n 1 191 ARG n 1 192 PHE n 1 193 GLU n 1 194 LEU n 1 195 PRO n 1 196 ALA n 1 197 PHE n 1 198 ASP n 1 199 PRO n 1 200 ARG n 1 201 THR n 1 202 ILE n 1 203 SER n 1 204 SER n 1 205 ALA n 1 206 GLY n 1 207 PRO n 1 208 LEU n 1 209 TYR n 1 210 LEU n 1 211 PRO n 1 212 GLU n 1 213 SER n 1 214 SER n 1 215 SER n 1 216 LEU n 1 217 LEU n 1 218 SER n 1 219 PRO n 1 220 ASN n 1 221 PRO n 1 222 GLU n 1 223 VAL n 1 224 VAL n 1 225 VAL n 1 226 ALA n 1 227 VAL n 1 228 GLY n 1 229 PHE n 1 230 PRO n 1 231 GLY n 1 232 ALA n 1 233 GLY n 1 234 LYS n 1 235 SER n 1 236 THR n 1 237 PHE n 1 238 ILE n 1 239 GLN n 1 240 GLU n 1 241 HIS n 1 242 LEU n 1 243 VAL n 1 244 SER n 1 245 ALA n 1 246 GLY n 1 247 TYR n 1 248 VAL n 1 249 HIS n 1 250 VAL n 1 251 ASN n 1 252 ARG n 1 253 ASP n 1 254 THR n 1 255 LEU n 1 256 GLY n 1 257 SER n 1 258 TRP n 1 259 GLN n 1 260 ARG n 1 261 CYS n 1 262 VAL n 1 263 SER n 1 264 SER n 1 265 CYS n 1 266 GLN n 1 267 ALA n 1 268 ALA n 1 269 LEU n 1 270 ARG n 1 271 GLN n 1 272 GLY n 1 273 LYS n 1 274 ARG n 1 275 VAL n 1 276 VAL n 1 277 ILE n 1 278 ASP n 1 279 ASN n 1 280 THR n 1 281 ASN n 1 282 PRO n 1 283 ASP n 1 284 VAL n 1 285 PRO n 1 286 SER n 1 287 ARG n 1 288 ALA n 1 289 ARG n 1 290 TYR n 1 291 ILE n 1 292 GLN n 1 293 CYS n 1 294 ALA n 1 295 LYS n 1 296 ASP n 1 297 ALA n 1 298 GLY n 1 299 VAL n 1 300 PRO n 1 301 CYS n 1 302 ARG n 1 303 CYS n 1 304 PHE n 1 305 ASN n 1 306 PHE n 1 307 CYS n 1 308 ALA n 1 309 THR n 1 310 ILE n 1 311 GLU n 1 312 GLN n 1 313 ALA n 1 314 ARG n 1 315 HIS n 1 316 ASN n 1 317 ASN n 1 318 ARG n 1 319 PHE n 1 320 ARG n 1 321 GLU n 1 322 MSE n 1 323 THR n 1 324 ASP n 1 325 PRO n 1 326 SER n 1 327 HIS n 1 328 ALA n 1 329 PRO n 1 330 VAL n 1 331 SER n 1 332 ASP n 1 333 MSE n 1 334 VAL n 1 335 MSE n 1 336 PHE n 1 337 SER n 1 338 TYR n 1 339 ARG n 1 340 LYS n 1 341 GLN n 1 342 PHE n 1 343 GLU n 1 344 PRO n 1 345 PRO n 1 346 THR n 1 347 LEU n 1 348 ALA n 1 349 GLU n 1 350 GLY n 1 351 PHE n 1 352 LEU n 1 353 GLU n 1 354 ILE n 1 355 LEU n 1 356 GLU n 1 357 ILE n 1 358 PRO n 1 359 PHE n 1 360 ARG n 1 361 LEU n 1 362 GLN n 1 363 GLU n 1 364 HIS n 1 365 LEU n 1 366 ASP n 1 367 PRO n 1 368 ALA n 1 369 LEU n 1 370 GLN n 1 371 ARG n 1 372 LEU n 1 373 TYR n 1 374 ARG n 1 375 GLN n 1 376 PHE n 1 377 SER n 1 378 GLU n 1 379 GLY n 2 1 DT n 2 2 DC n 2 3 DC n 2 4 DT n 2 5 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Pnkp _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pet19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA substrate of PNKP phosphatase domain' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PNKP_MOUSE Q9JLV6 1 ;LGWESLKKLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGR GKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRKKK DFSCADRLFALNVGLPFATPEEFFLKWPAARFELPAFDPRTISSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQE HLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR EMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFSEG ; 144 ? 2 PDB 3U7G 3U7G 2 TCCTA ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3U7G A 1 ? 379 ? Q9JLV6 144 ? 522 ? 144 522 2 2 3U7G X 1 ? 5 ? 3U7G 398 ? 402 ? 398 402 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3U7G _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 27 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9JLV6 _struct_ref_seq_dif.db_mon_id ASP _struct_ref_seq_dif.pdbx_seq_db_seq_num 170 _struct_ref_seq_dif.details 'ENGINEERED MUTATION' _struct_ref_seq_dif.pdbx_auth_seq_num 170 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3U7G _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '25% PEG 3350, pH 6.5, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-05-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1172 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 12.3.1' _diffrn_source.pdbx_wavelength_list 1.1172 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 12.3.1 # _reflns.entry_id 3U7G _reflns.d_resolution_high 2.100 _reflns.number_obs ? _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_netI_over_sigmaI 10.060 _reflns.percent_possible_obs 90.400 _reflns.B_iso_Wilson_estimate 28.757 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F -3.000 _reflns.d_resolution_low 40.5440 _reflns.number_all 21409 _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.100 2.150 3216 ? 1317 0.443 2.380 ? ? ? ? ? 82.900 1 1 2.150 2.200 3396 ? 1304 0.366 2.880 ? ? ? ? ? 89.400 2 1 2.200 2.250 2618 ? 927 0.345 3.320 ? ? ? ? ? 71.800 3 1 2.250 2.300 2833 ? 891 0.331 3.800 ? ? ? ? ? 72.600 4 1 2.300 2.350 3711 ? 1104 0.279 4.510 ? ? ? ? ? 97.800 5 1 2.350 2.400 3413 ? 1020 0.242 4.960 ? ? ? ? ? 99.100 6 1 2.400 2.500 6079 ? 1798 0.209 5.850 ? ? ? ? ? 98.700 7 1 2.500 2.600 5209 ? 1529 0.187 6.610 ? ? ? ? ? 97.800 8 1 2.600 2.800 6965 ? 2079 0.150 7.960 ? ? ? ? ? 84.400 9 1 2.800 3.000 6120 ? 1802 0.112 10.150 ? ? ? ? ? 97.600 10 1 3.000 3.500 9289 ? 2797 0.075 13.890 ? ? ? ? ? 93.000 11 1 3.500 5.000 9901 ? 3093 0.049 19.610 ? ? ? ? ? 90.700 12 1 5.000 10.000 4878 ? 1503 0.046 20.670 ? ? ? ? ? 94.800 13 1 10.000 40.5440 778 ? 245 0.036 24.120 ? ? ? ? ? 96.100 14 1 # _refine.entry_id 3U7G _refine.ls_d_res_high 2.1000 _refine.ls_d_res_low 40.5440 _refine.pdbx_ls_sigma_F -3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 90.7600 _refine.ls_number_reflns_obs 21474 _refine.ls_number_reflns_all 21474 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2098 _refine.ls_R_factor_R_work 0.2072 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2600 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0400 _refine.ls_number_reflns_R_free 1082 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 34.2736 _refine.solvent_model_param_bsol 33.5690 _refine.solvent_model_param_ksol 0.3730 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -7.0841 _refine.aniso_B[2][2] 8.9918 _refine.aniso_B[3][3] -1.9077 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -1.5848 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.5700 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 1YJ5 _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8240 _refine.B_iso_max 133.170 _refine.B_iso_min 6.310 _refine.pdbx_overall_phase_error 24.8100 _refine.occupancy_max 1.000 _refine.occupancy_min 0.730 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2925 _refine_hist.pdbx_number_atoms_nucleic_acid 41 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 201 _refine_hist.number_atoms_total 3195 _refine_hist.d_res_high 2.1000 _refine_hist.d_res_low 40.5440 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 3074 0.009 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 4179 1.044 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 453 0.055 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 536 0.005 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 1132 13.879 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.0999 2.1955 8 86.0000 2364 . 0.2355 0.2918 . 131 . 2495 . . 'X-RAY DIFFRACTION' 2.1955 2.3112 8 76.0000 2134 . 0.2329 0.3135 . 113 . 2247 . . 'X-RAY DIFFRACTION' 2.3112 2.4560 8 98.0000 2750 . 0.2242 0.2994 . 146 . 2896 . . 'X-RAY DIFFRACTION' 2.4560 2.6456 8 98.0000 2701 . 0.2162 0.2532 . 140 . 2841 . . 'X-RAY DIFFRACTION' 2.6456 2.9118 8 87.0000 2430 . 0.2208 0.2597 . 133 . 2563 . . 'X-RAY DIFFRACTION' 2.9118 3.3329 8 98.0000 2760 . 0.2169 0.2757 . 145 . 2905 . . 'X-RAY DIFFRACTION' 3.3329 4.1985 8 86.0000 2426 . 0.1924 0.2629 . 131 . 2557 . . 'X-RAY DIFFRACTION' 4.1985 40.5511 8 97.0000 2827 . 0.1844 0.2147 . 143 . 2970 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3U7G _struct.title 'Crystal structure of mPNKP catalytic fragment (D170A) bound to single-stranded DNA (TCCTAp)' _struct.pdbx_descriptor 'PNKP/DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U7G _struct_keywords.text 'protein-DNA complex, HAD family, pnkp, DNA repair, phosphatase, HYDROLASE, TRANSFERASE-DNA complex' _struct_keywords.pdbx_keywords HYDROLASE,TRANSFERASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 4 ? I N N 6 ? J N N 6 ? # loop_ _struct_biol.id _struct_biol.details 1 ? 0 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 54 ? GLU A 65 ? GLU A 197 GLU A 208 1 ? 12 HELX_P HELX_P2 2 GLN A 75 ? ARG A 80 ? GLN A 218 ARG A 223 1 ? 6 HELX_P HELX_P3 3 PRO A 84 ? GLY A 100 ? PRO A 227 GLY A 243 1 ? 17 HELX_P HELX_P4 4 SER A 119 ? ALA A 129 ? SER A 262 ALA A 272 1 ? 11 HELX_P HELX_P5 5 CYS A 164 ? GLY A 174 ? CYS A 307 GLY A 317 1 ? 11 HELX_P HELX_P6 6 THR A 179 ? LYS A 186 ? THR A 322 LYS A 329 1 ? 8 HELX_P HELX_P7 7 ASP A 198 ? ILE A 202 ? ASP A 341 ILE A 345 5 ? 5 HELX_P HELX_P8 8 GLY A 233 ? LEU A 242 ? GLY A 376 LEU A 385 1 ? 10 HELX_P HELX_P9 9 VAL A 243 ? ALA A 245 ? VAL A 386 ALA A 388 5 ? 3 HELX_P HELX_P10 10 SER A 257 ? GLN A 271 ? SER A 400 GLN A 414 1 ? 15 HELX_P HELX_P11 11 ASP A 283 ? ALA A 297 ? ASP A 426 ALA A 440 1 ? 15 HELX_P HELX_P12 12 THR A 309 ? ASP A 324 ? THR A 452 ASP A 467 1 ? 16 HELX_P HELX_P13 13 SER A 331 ? PHE A 342 ? SER A 474 PHE A 485 1 ? 12 HELX_P HELX_P14 14 THR A 346 ? GLY A 350 ? THR A 489 GLY A 493 5 ? 5 HELX_P HELX_P15 15 ASP A 366 ? ARG A 374 ? ASP A 509 ARG A 517 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLN 75 C ? ? ? 1_555 A MSE 76 N ? ? A GLN 218 A MSE 219 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 76 C ? ? ? 1_555 A GLY 77 N ? ? A MSE 219 A GLY 220 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A GLY 120 C ? ? ? 1_555 A MSE 121 N ? ? A GLY 263 A MSE 264 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 121 C ? ? ? 1_555 A TRP 122 N ? ? A MSE 264 A TRP 265 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? A GLU 321 C ? ? ? 1_555 A MSE 322 N ? ? A GLU 464 A MSE 465 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 322 C ? ? ? 1_555 A THR 323 N ? ? A MSE 465 A THR 466 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale ? ? A ASP 332 C ? ? ? 1_555 A MSE 333 N ? ? A ASP 475 A MSE 476 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale ? ? A MSE 333 C ? ? ? 1_555 A VAL 334 N ? ? A MSE 476 A VAL 477 1_555 ? ? ? ? ? ? ? 1.326 ? covale9 covale ? ? A VAL 334 C ? ? ? 1_555 A MSE 335 N ? ? A VAL 477 A MSE 478 1_555 ? ? ? ? ? ? ? 1.332 ? covale10 covale ? ? A MSE 335 C ? ? ? 1_555 A PHE 336 N ? ? A MSE 478 A PHE 479 1_555 ? ? ? ? ? ? ? 1.331 ? metalc1 metalc ? ? H PO4 . O1 ? ? ? 1_555 G MG . MG ? ? X PO4 523 A MG 529 1_555 ? ? ? ? ? ? ? 1.960 ? metalc2 metalc ? ? A ASP 29 O ? ? ? 1_555 G MG . MG ? ? A ASP 172 A MG 529 1_555 ? ? ? ? ? ? ? 2.238 ? metalc3 metalc ? ? A ASP 145 OD1 ? ? ? 1_555 G MG . MG ? ? A ASP 288 A MG 529 1_555 ? ? ? ? ? ? ? 2.267 ? metalc4 metalc ? ? A ASP 145 OD2 ? ? ? 1_555 G MG . MG ? ? A ASP 288 A MG 529 1_555 ? ? ? ? ? ? ? 2.986 ? metalc5 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 529 A HOH 5 1_555 ? ? ? ? ? ? ? 2.065 ? metalc6 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 529 A HOH 20 1_555 ? ? ? ? ? ? ? 2.083 ? covale11 covale ? ? B DA 5 "O3'" ? ? ? 1_555 H PO4 . P ? ? X DA 402 X PO4 523 1_555 ? ? ? ? ? ? ? 1.606 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 116 A . ? LYS 259 A PRO 117 A ? PRO 260 A 1 7.16 2 LEU 210 A . ? LEU 353 A PRO 211 A ? PRO 354 A 1 -0.83 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel B 1 2 ? anti-parallel C 1 2 ? parallel C 2 3 ? parallel C 3 4 ? parallel C 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 3 ? LEU A 6 ? TRP A 146 LEU A 149 A 2 LEU A 9 ? THR A 13 ? LEU A 152 THR A 156 A 3 GLN A 104 ? ALA A 108 ? GLN A 247 ALA A 251 A 4 LYS A 68 ? ASN A 74 ? LYS A 211 ASN A 217 A 5 VAL A 23 ? PHE A 26 ? VAL A 166 PHE A 169 A 6 VAL A 141 ? VAL A 143 ? VAL A 284 VAL A 286 A 7 PHE A 177 ? ALA A 178 ? PHE A 320 ALA A 321 B 1 ILE A 33 ? THR A 34 ? ILE A 176 THR A 177 B 2 ARG A 49 ? ILE A 50 ? ARG A 192 ILE A 193 C 1 TYR A 247 ? ASN A 251 ? TYR A 390 ASN A 394 C 2 ARG A 274 ? ASP A 278 ? ARG A 417 ASP A 421 C 3 VAL A 223 ? VAL A 227 ? VAL A 366 VAL A 370 C 4 CYS A 301 ? PHE A 306 ? CYS A 444 PHE A 449 C 5 GLU A 353 ? ILE A 357 ? GLU A 496 ILE A 500 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 4 ? N GLU A 147 O VAL A 11 ? O VAL A 154 A 2 3 N PHE A 12 ? N PHE A 155 O VAL A 105 ? O VAL A 248 A 3 4 O LEU A 106 ? O LEU A 249 N ILE A 71 ? N ILE A 214 A 4 5 O PHE A 72 ? O PHE A 215 N PHE A 26 ? N PHE A 169 A 5 6 N ALA A 25 ? N ALA A 168 O VAL A 141 ? O VAL A 284 A 6 7 N PHE A 142 ? N PHE A 285 O ALA A 178 ? O ALA A 321 B 1 2 N THR A 34 ? N THR A 177 O ARG A 49 ? O ARG A 192 C 1 2 N VAL A 248 ? N VAL A 391 O ARG A 274 ? O ARG A 417 C 2 3 O ILE A 277 ? O ILE A 420 N VAL A 224 ? N VAL A 367 C 3 4 N VAL A 227 ? N VAL A 370 O PHE A 306 ? O PHE A 449 C 4 5 N CYS A 303 ? N CYS A 446 O LEU A 355 ? O LEU A 498 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE PO4 X 523' AC2 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE GOL A 1' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 526' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 527' AC5 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE PO4 A 528' AC6 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MG A 529' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 HOH I . ? HOH A 5 . ? 1_555 ? 2 AC1 10 ALA A 27 ? ALA A 170 . ? 1_555 ? 3 AC1 10 LEU A 28 ? LEU A 171 . ? 1_555 ? 4 AC1 10 ASP A 29 ? ASP A 172 . ? 1_555 ? 5 AC1 10 THR A 73 ? THR A 216 . ? 1_555 ? 6 AC1 10 ASN A 74 ? ASN A 217 . ? 1_555 ? 7 AC1 10 LYS A 116 ? LYS A 259 . ? 1_555 ? 8 AC1 10 MG G . ? MG A 529 . ? 1_555 ? 9 AC1 10 HOH J . ? HOH X 66 . ? 1_555 ? 10 AC1 10 DA B 5 ? DA X 402 . ? 1_555 ? 11 AC2 9 HOH I . ? HOH A 70 . ? 1_555 ? 12 AC2 9 PRO A 195 ? PRO A 338 . ? 1_555 ? 13 AC2 9 PHE A 197 ? PHE A 340 . ? 1_555 ? 14 AC2 9 PRO A 199 ? PRO A 342 . ? 1_555 ? 15 AC2 9 HIS A 315 ? HIS A 458 . ? 1_555 ? 16 AC2 9 ARG A 318 ? ARG A 461 . ? 1_555 ? 17 AC2 9 PHE A 376 ? PHE A 519 . ? 1_555 ? 18 AC2 9 SER A 377 ? SER A 520 . ? 1_555 ? 19 AC2 9 GLU A 378 ? GLU A 521 . ? 1_555 ? 20 AC3 6 HOH I . ? HOH A 29 . ? 1_555 ? 21 AC3 6 VAL A 17 ? VAL A 160 . ? 1_555 ? 22 AC3 6 LYS A 18 ? LYS A 161 . ? 1_555 ? 23 AC3 6 GLN A 20 ? GLN A 163 . ? 1_555 ? 24 AC3 6 TYR A 67 ? TYR A 210 . ? 1_555 ? 25 AC3 6 PRO A 102 ? PRO A 245 . ? 1_555 ? 26 AC4 5 HOH I . ? HOH A 125 . ? 1_555 ? 27 AC4 5 LYS A 58 ? LYS A 201 . ? 1_555 ? 28 AC4 5 LEU A 62 ? LEU A 205 . ? 1_555 ? 29 AC4 5 GLU A 65 ? GLU A 208 . ? 1_555 ? 30 AC4 5 TYR A 67 ? TYR A 210 . ? 1_555 ? 31 AC5 9 HOH I . ? HOH A 49 . ? 1_555 ? 32 AC5 9 HOH I . ? HOH A 51 . ? 1_555 ? 33 AC5 9 PHE A 229 ? PHE A 372 . ? 1_555 ? 34 AC5 9 GLY A 231 ? GLY A 374 . ? 1_555 ? 35 AC5 9 ALA A 232 ? ALA A 375 . ? 1_555 ? 36 AC5 9 GLY A 233 ? GLY A 376 . ? 1_555 ? 37 AC5 9 LYS A 234 ? LYS A 377 . ? 1_555 ? 38 AC5 9 SER A 235 ? SER A 378 . ? 1_555 ? 39 AC5 9 HOH I . ? HOH A 588 . ? 1_555 ? 40 AC6 5 HOH I . ? HOH A 5 . ? 1_555 ? 41 AC6 5 HOH I . ? HOH A 20 . ? 1_555 ? 42 AC6 5 ASP A 29 ? ASP A 172 . ? 1_555 ? 43 AC6 5 ASP A 145 ? ASP A 288 . ? 1_555 ? 44 AC6 5 PO4 H . ? PO4 X 523 . ? 1_555 ? # _atom_sites.entry_id 3U7G _atom_sites.fract_transf_matrix[1][1] 0.012960 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003992 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023240 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008222 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H MG N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 144 144 LEU LEU A . n A 1 2 GLY 2 145 145 GLY GLY A . n A 1 3 TRP 3 146 146 TRP TRP A . n A 1 4 GLU 4 147 147 GLU GLU A . n A 1 5 SER 5 148 148 SER SER A . n A 1 6 LEU 6 149 149 LEU LEU A . n A 1 7 LYS 7 150 150 LYS LYS A . n A 1 8 LYS 8 151 151 LYS LYS A . n A 1 9 LEU 9 152 152 LEU LEU A . n A 1 10 LEU 10 153 153 LEU LEU A . n A 1 11 VAL 11 154 154 VAL VAL A . n A 1 12 PHE 12 155 155 PHE PHE A . n A 1 13 THR 13 156 156 THR THR A . n A 1 14 ALA 14 157 157 ALA ALA A . n A 1 15 SER 15 158 158 SER SER A . n A 1 16 GLY 16 159 159 GLY GLY A . n A 1 17 VAL 17 160 160 VAL VAL A . n A 1 18 LYS 18 161 161 LYS LYS A . n A 1 19 PRO 19 162 162 PRO PRO A . n A 1 20 GLN 20 163 163 GLN GLN A . n A 1 21 GLY 21 164 164 GLY GLY A . n A 1 22 LYS 22 165 165 LYS LYS A . n A 1 23 VAL 23 166 166 VAL VAL A . n A 1 24 ALA 24 167 167 ALA ALA A . n A 1 25 ALA 25 168 168 ALA ALA A . n A 1 26 PHE 26 169 169 PHE PHE A . n A 1 27 ALA 27 170 170 ALA ALA A . n A 1 28 LEU 28 171 171 LEU LEU A . n A 1 29 ASP 29 172 172 ASP ASP A . n A 1 30 GLY 30 173 173 GLY GLY A . n A 1 31 THR 31 174 174 THR THR A . n A 1 32 LEU 32 175 175 LEU LEU A . n A 1 33 ILE 33 176 176 ILE ILE A . n A 1 34 THR 34 177 177 THR THR A . n A 1 35 THR 35 178 178 THR THR A . n A 1 36 ARG 36 179 179 ARG ARG A . n A 1 37 SER 37 180 180 SER SER A . n A 1 38 GLY 38 181 181 GLY GLY A . n A 1 39 LYS 39 182 182 LYS LYS A . n A 1 40 VAL 40 183 183 VAL VAL A . n A 1 41 PHE 41 184 184 PHE PHE A . n A 1 42 PRO 42 185 185 PRO PRO A . n A 1 43 THR 43 186 186 THR THR A . n A 1 44 SER 44 187 187 SER SER A . n A 1 45 PRO 45 188 188 PRO PRO A . n A 1 46 SER 46 189 189 SER SER A . n A 1 47 ASP 47 190 190 ASP ASP A . n A 1 48 TRP 48 191 191 TRP TRP A . n A 1 49 ARG 49 192 192 ARG ARG A . n A 1 50 ILE 50 193 193 ILE ILE A . n A 1 51 LEU 51 194 194 LEU LEU A . n A 1 52 TYR 52 195 195 TYR TYR A . n A 1 53 PRO 53 196 196 PRO PRO A . n A 1 54 GLU 54 197 197 GLU GLU A . n A 1 55 ILE 55 198 198 ILE ILE A . n A 1 56 PRO 56 199 199 PRO PRO A . n A 1 57 LYS 57 200 200 LYS LYS A . n A 1 58 LYS 58 201 201 LYS LYS A . n A 1 59 LEU 59 202 202 LEU LEU A . n A 1 60 GLN 60 203 203 GLN GLN A . n A 1 61 GLU 61 204 204 GLU GLU A . n A 1 62 LEU 62 205 205 LEU LEU A . n A 1 63 ALA 63 206 206 ALA ALA A . n A 1 64 ALA 64 207 207 ALA ALA A . n A 1 65 GLU 65 208 208 GLU GLU A . n A 1 66 GLY 66 209 209 GLY GLY A . n A 1 67 TYR 67 210 210 TYR TYR A . n A 1 68 LYS 68 211 211 LYS LYS A . n A 1 69 LEU 69 212 212 LEU LEU A . n A 1 70 VAL 70 213 213 VAL VAL A . n A 1 71 ILE 71 214 214 ILE ILE A . n A 1 72 PHE 72 215 215 PHE PHE A . n A 1 73 THR 73 216 216 THR THR A . n A 1 74 ASN 74 217 217 ASN ASN A . n A 1 75 GLN 75 218 218 GLN GLN A . n A 1 76 MSE 76 219 219 MSE MSE A . n A 1 77 GLY 77 220 220 GLY GLY A . n A 1 78 ILE 78 221 221 ILE ILE A . n A 1 79 GLY 79 222 222 GLY GLY A . n A 1 80 ARG 80 223 223 ARG ARG A . n A 1 81 GLY 81 224 224 GLY GLY A . n A 1 82 LYS 82 225 225 LYS LYS A . n A 1 83 LEU 83 226 226 LEU LEU A . n A 1 84 PRO 84 227 227 PRO PRO A . n A 1 85 ALA 85 228 228 ALA ALA A . n A 1 86 GLU 86 229 229 GLU GLU A . n A 1 87 VAL 87 230 230 VAL VAL A . n A 1 88 PHE 88 231 231 PHE PHE A . n A 1 89 LYS 89 232 232 LYS LYS A . n A 1 90 GLY 90 233 233 GLY GLY A . n A 1 91 LYS 91 234 234 LYS LYS A . n A 1 92 VAL 92 235 235 VAL VAL A . n A 1 93 GLU 93 236 236 GLU GLU A . n A 1 94 ALA 94 237 237 ALA ALA A . n A 1 95 VAL 95 238 238 VAL VAL A . n A 1 96 LEU 96 239 239 LEU LEU A . n A 1 97 GLU 97 240 240 GLU GLU A . n A 1 98 LYS 98 241 241 LYS LYS A . n A 1 99 LEU 99 242 242 LEU LEU A . n A 1 100 GLY 100 243 243 GLY GLY A . n A 1 101 VAL 101 244 244 VAL VAL A . n A 1 102 PRO 102 245 245 PRO PRO A . n A 1 103 PHE 103 246 246 PHE PHE A . n A 1 104 GLN 104 247 247 GLN GLN A . n A 1 105 VAL 105 248 248 VAL VAL A . n A 1 106 LEU 106 249 249 LEU LEU A . n A 1 107 VAL 107 250 250 VAL VAL A . n A 1 108 ALA 108 251 251 ALA ALA A . n A 1 109 THR 109 252 252 THR THR A . n A 1 110 HIS 110 253 253 HIS HIS A . n A 1 111 ALA 111 254 254 ALA ALA A . n A 1 112 GLY 112 255 255 GLY GLY A . n A 1 113 LEU 113 256 256 LEU LEU A . n A 1 114 ASN 114 257 257 ASN ASN A . n A 1 115 ARG 115 258 258 ARG ARG A . n A 1 116 LYS 116 259 259 LYS LYS A . n A 1 117 PRO 117 260 260 PRO PRO A . n A 1 118 VAL 118 261 261 VAL VAL A . n A 1 119 SER 119 262 262 SER SER A . n A 1 120 GLY 120 263 263 GLY GLY A . n A 1 121 MSE 121 264 264 MSE MSE A . n A 1 122 TRP 122 265 265 TRP TRP A . n A 1 123 ASP 123 266 266 ASP ASP A . n A 1 124 HIS 124 267 267 HIS HIS A . n A 1 125 LEU 125 268 268 LEU LEU A . n A 1 126 GLN 126 269 269 GLN GLN A . n A 1 127 GLU 127 270 270 GLU GLU A . n A 1 128 GLN 128 271 271 GLN GLN A . n A 1 129 ALA 129 272 272 ALA ALA A . n A 1 130 ASN 130 273 273 ASN ASN A . n A 1 131 GLU 131 274 274 GLU GLU A . n A 1 132 GLY 132 275 275 GLY GLY A . n A 1 133 ILE 133 276 276 ILE ILE A . n A 1 134 PRO 134 277 277 PRO PRO A . n A 1 135 ILE 135 278 278 ILE ILE A . n A 1 136 SER 136 279 279 SER SER A . n A 1 137 VAL 137 280 280 VAL VAL A . n A 1 138 GLU 138 281 281 GLU GLU A . n A 1 139 ASP 139 282 282 ASP ASP A . n A 1 140 SER 140 283 283 SER SER A . n A 1 141 VAL 141 284 284 VAL VAL A . n A 1 142 PHE 142 285 285 PHE PHE A . n A 1 143 VAL 143 286 286 VAL VAL A . n A 1 144 GLY 144 287 287 GLY GLY A . n A 1 145 ASP 145 288 288 ASP ASP A . n A 1 146 ALA 146 289 289 ALA ALA A . n A 1 147 ALA 147 290 290 ALA ALA A . n A 1 148 GLY 148 291 291 GLY GLY A . n A 1 149 ARG 149 292 292 ARG ARG A . n A 1 150 LEU 150 293 293 LEU LEU A . n A 1 151 ALA 151 294 294 ALA ALA A . n A 1 152 ASN 152 295 295 ASN ASN A . n A 1 153 TRP 153 296 296 TRP TRP A . n A 1 154 ALA 154 297 297 ALA ALA A . n A 1 155 PRO 155 298 298 PRO PRO A . n A 1 156 GLY 156 299 299 GLY GLY A . n A 1 157 ARG 157 300 300 ARG ARG A . n A 1 158 LYS 158 301 301 LYS LYS A . n A 1 159 LYS 159 302 302 LYS LYS A . n A 1 160 LYS 160 303 303 LYS LYS A . n A 1 161 ASP 161 304 304 ASP ASP A . n A 1 162 PHE 162 305 305 PHE PHE A . n A 1 163 SER 163 306 306 SER SER A . n A 1 164 CYS 164 307 307 CYS CYS A . n A 1 165 ALA 165 308 308 ALA ALA A . n A 1 166 ASP 166 309 309 ASP ASP A . n A 1 167 ARG 167 310 310 ARG ARG A . n A 1 168 LEU 168 311 311 LEU LEU A . n A 1 169 PHE 169 312 312 PHE PHE A . n A 1 170 ALA 170 313 313 ALA ALA A . n A 1 171 LEU 171 314 314 LEU LEU A . n A 1 172 ASN 172 315 315 ASN ASN A . n A 1 173 VAL 173 316 316 VAL VAL A . n A 1 174 GLY 174 317 317 GLY GLY A . n A 1 175 LEU 175 318 318 LEU LEU A . n A 1 176 PRO 176 319 319 PRO PRO A . n A 1 177 PHE 177 320 320 PHE PHE A . n A 1 178 ALA 178 321 321 ALA ALA A . n A 1 179 THR 179 322 322 THR THR A . n A 1 180 PRO 180 323 323 PRO PRO A . n A 1 181 GLU 181 324 324 GLU GLU A . n A 1 182 GLU 182 325 325 GLU GLU A . n A 1 183 PHE 183 326 326 PHE PHE A . n A 1 184 PHE 184 327 327 PHE PHE A . n A 1 185 LEU 185 328 328 LEU LEU A . n A 1 186 LYS 186 329 329 LYS LYS A . n A 1 187 TRP 187 330 330 TRP TRP A . n A 1 188 PRO 188 331 331 PRO PRO A . n A 1 189 ALA 189 332 332 ALA ALA A . n A 1 190 ALA 190 333 333 ALA ALA A . n A 1 191 ARG 191 334 334 ARG ARG A . n A 1 192 PHE 192 335 335 PHE PHE A . n A 1 193 GLU 193 336 336 GLU GLU A . n A 1 194 LEU 194 337 337 LEU LEU A . n A 1 195 PRO 195 338 338 PRO PRO A . n A 1 196 ALA 196 339 339 ALA ALA A . n A 1 197 PHE 197 340 340 PHE PHE A . n A 1 198 ASP 198 341 341 ASP ASP A . n A 1 199 PRO 199 342 342 PRO PRO A . n A 1 200 ARG 200 343 343 ARG ARG A . n A 1 201 THR 201 344 344 THR THR A . n A 1 202 ILE 202 345 345 ILE ILE A . n A 1 203 SER 203 346 346 SER SER A . n A 1 204 SER 204 347 347 SER SER A . n A 1 205 ALA 205 348 348 ALA ALA A . n A 1 206 GLY 206 349 349 GLY GLY A . n A 1 207 PRO 207 350 350 PRO PRO A . n A 1 208 LEU 208 351 351 LEU LEU A . n A 1 209 TYR 209 352 352 TYR TYR A . n A 1 210 LEU 210 353 353 LEU LEU A . n A 1 211 PRO 211 354 354 PRO PRO A . n A 1 212 GLU 212 355 355 GLU GLU A . n A 1 213 SER 213 356 356 SER SER A . n A 1 214 SER 214 357 357 SER SER A . n A 1 215 SER 215 358 358 SER SER A . n A 1 216 LEU 216 359 359 LEU LEU A . n A 1 217 LEU 217 360 360 LEU LEU A . n A 1 218 SER 218 361 361 SER SER A . n A 1 219 PRO 219 362 362 PRO PRO A . n A 1 220 ASN 220 363 363 ASN ASN A . n A 1 221 PRO 221 364 364 PRO PRO A . n A 1 222 GLU 222 365 365 GLU GLU A . n A 1 223 VAL 223 366 366 VAL VAL A . n A 1 224 VAL 224 367 367 VAL VAL A . n A 1 225 VAL 225 368 368 VAL VAL A . n A 1 226 ALA 226 369 369 ALA ALA A . n A 1 227 VAL 227 370 370 VAL VAL A . n A 1 228 GLY 228 371 371 GLY GLY A . n A 1 229 PHE 229 372 372 PHE PHE A . n A 1 230 PRO 230 373 373 PRO PRO A . n A 1 231 GLY 231 374 374 GLY GLY A . n A 1 232 ALA 232 375 375 ALA ALA A . n A 1 233 GLY 233 376 376 GLY GLY A . n A 1 234 LYS 234 377 377 LYS LYS A . n A 1 235 SER 235 378 378 SER SER A . n A 1 236 THR 236 379 379 THR THR A . n A 1 237 PHE 237 380 380 PHE PHE A . n A 1 238 ILE 238 381 381 ILE ILE A . n A 1 239 GLN 239 382 382 GLN GLN A . n A 1 240 GLU 240 383 383 GLU GLU A . n A 1 241 HIS 241 384 384 HIS HIS A . n A 1 242 LEU 242 385 385 LEU LEU A . n A 1 243 VAL 243 386 386 VAL VAL A . n A 1 244 SER 244 387 387 SER SER A . n A 1 245 ALA 245 388 388 ALA ALA A . n A 1 246 GLY 246 389 389 GLY GLY A . n A 1 247 TYR 247 390 390 TYR TYR A . n A 1 248 VAL 248 391 391 VAL VAL A . n A 1 249 HIS 249 392 392 HIS HIS A . n A 1 250 VAL 250 393 393 VAL VAL A . n A 1 251 ASN 251 394 394 ASN ASN A . n A 1 252 ARG 252 395 395 ARG ARG A . n A 1 253 ASP 253 396 396 ASP ASP A . n A 1 254 THR 254 397 397 THR THR A . n A 1 255 LEU 255 398 398 LEU LEU A . n A 1 256 GLY 256 399 399 GLY GLY A . n A 1 257 SER 257 400 400 SER SER A . n A 1 258 TRP 258 401 401 TRP TRP A . n A 1 259 GLN 259 402 402 GLN GLN A . n A 1 260 ARG 260 403 403 ARG ARG A . n A 1 261 CYS 261 404 404 CYS CYS A . n A 1 262 VAL 262 405 405 VAL VAL A . n A 1 263 SER 263 406 406 SER SER A . n A 1 264 SER 264 407 407 SER SER A . n A 1 265 CYS 265 408 408 CYS CYS A . n A 1 266 GLN 266 409 409 GLN GLN A . n A 1 267 ALA 267 410 410 ALA ALA A . n A 1 268 ALA 268 411 411 ALA ALA A . n A 1 269 LEU 269 412 412 LEU LEU A . n A 1 270 ARG 270 413 413 ARG ARG A . n A 1 271 GLN 271 414 414 GLN GLN A . n A 1 272 GLY 272 415 415 GLY GLY A . n A 1 273 LYS 273 416 416 LYS LYS A . n A 1 274 ARG 274 417 417 ARG ARG A . n A 1 275 VAL 275 418 418 VAL VAL A . n A 1 276 VAL 276 419 419 VAL VAL A . n A 1 277 ILE 277 420 420 ILE ILE A . n A 1 278 ASP 278 421 421 ASP ASP A . n A 1 279 ASN 279 422 422 ASN ASN A . n A 1 280 THR 280 423 423 THR THR A . n A 1 281 ASN 281 424 424 ASN ASN A . n A 1 282 PRO 282 425 425 PRO PRO A . n A 1 283 ASP 283 426 426 ASP ASP A . n A 1 284 VAL 284 427 427 VAL VAL A . n A 1 285 PRO 285 428 428 PRO PRO A . n A 1 286 SER 286 429 429 SER SER A . n A 1 287 ARG 287 430 430 ARG ARG A . n A 1 288 ALA 288 431 431 ALA ALA A . n A 1 289 ARG 289 432 432 ARG ARG A . n A 1 290 TYR 290 433 433 TYR TYR A . n A 1 291 ILE 291 434 434 ILE ILE A . n A 1 292 GLN 292 435 435 GLN GLN A . n A 1 293 CYS 293 436 436 CYS CYS A . n A 1 294 ALA 294 437 437 ALA ALA A . n A 1 295 LYS 295 438 438 LYS LYS A . n A 1 296 ASP 296 439 439 ASP ASP A . n A 1 297 ALA 297 440 440 ALA ALA A . n A 1 298 GLY 298 441 441 GLY GLY A . n A 1 299 VAL 299 442 442 VAL VAL A . n A 1 300 PRO 300 443 443 PRO PRO A . n A 1 301 CYS 301 444 444 CYS CYS A . n A 1 302 ARG 302 445 445 ARG ARG A . n A 1 303 CYS 303 446 446 CYS CYS A . n A 1 304 PHE 304 447 447 PHE PHE A . n A 1 305 ASN 305 448 448 ASN ASN A . n A 1 306 PHE 306 449 449 PHE PHE A . n A 1 307 CYS 307 450 450 CYS CYS A . n A 1 308 ALA 308 451 451 ALA ALA A . n A 1 309 THR 309 452 452 THR THR A . n A 1 310 ILE 310 453 453 ILE ILE A . n A 1 311 GLU 311 454 454 GLU GLU A . n A 1 312 GLN 312 455 455 GLN GLN A . n A 1 313 ALA 313 456 456 ALA ALA A . n A 1 314 ARG 314 457 457 ARG ARG A . n A 1 315 HIS 315 458 458 HIS HIS A . n A 1 316 ASN 316 459 459 ASN ASN A . n A 1 317 ASN 317 460 460 ASN ASN A . n A 1 318 ARG 318 461 461 ARG ARG A . n A 1 319 PHE 319 462 462 PHE PHE A . n A 1 320 ARG 320 463 463 ARG ARG A . n A 1 321 GLU 321 464 464 GLU GLU A . n A 1 322 MSE 322 465 465 MSE MSE A . n A 1 323 THR 323 466 466 THR THR A . n A 1 324 ASP 324 467 467 ASP ASP A . n A 1 325 PRO 325 468 468 PRO PRO A . n A 1 326 SER 326 469 469 SER SER A . n A 1 327 HIS 327 470 470 HIS HIS A . n A 1 328 ALA 328 471 471 ALA ALA A . n A 1 329 PRO 329 472 472 PRO PRO A . n A 1 330 VAL 330 473 473 VAL VAL A . n A 1 331 SER 331 474 474 SER SER A . n A 1 332 ASP 332 475 475 ASP ASP A . n A 1 333 MSE 333 476 476 MSE MSE A . n A 1 334 VAL 334 477 477 VAL VAL A . n A 1 335 MSE 335 478 478 MSE MSE A . n A 1 336 PHE 336 479 479 PHE PHE A . n A 1 337 SER 337 480 480 SER SER A . n A 1 338 TYR 338 481 481 TYR TYR A . n A 1 339 ARG 339 482 482 ARG ARG A . n A 1 340 LYS 340 483 483 LYS LYS A . n A 1 341 GLN 341 484 484 GLN GLN A . n A 1 342 PHE 342 485 485 PHE PHE A . n A 1 343 GLU 343 486 486 GLU GLU A . n A 1 344 PRO 344 487 487 PRO PRO A . n A 1 345 PRO 345 488 488 PRO PRO A . n A 1 346 THR 346 489 489 THR THR A . n A 1 347 LEU 347 490 490 LEU LEU A . n A 1 348 ALA 348 491 491 ALA ALA A . n A 1 349 GLU 349 492 492 GLU GLU A . n A 1 350 GLY 350 493 493 GLY GLY A . n A 1 351 PHE 351 494 494 PHE PHE A . n A 1 352 LEU 352 495 495 LEU LEU A . n A 1 353 GLU 353 496 496 GLU GLU A . n A 1 354 ILE 354 497 497 ILE ILE A . n A 1 355 LEU 355 498 498 LEU LEU A . n A 1 356 GLU 356 499 499 GLU GLU A . n A 1 357 ILE 357 500 500 ILE ILE A . n A 1 358 PRO 358 501 501 PRO PRO A . n A 1 359 PHE 359 502 502 PHE PHE A . n A 1 360 ARG 360 503 503 ARG ARG A . n A 1 361 LEU 361 504 504 LEU LEU A . n A 1 362 GLN 362 505 505 GLN GLN A . n A 1 363 GLU 363 506 ? ? ? A . n A 1 364 HIS 364 507 ? ? ? A . n A 1 365 LEU 365 508 508 LEU LEU A . n A 1 366 ASP 366 509 509 ASP ASP A . n A 1 367 PRO 367 510 510 PRO PRO A . n A 1 368 ALA 368 511 511 ALA ALA A . n A 1 369 LEU 369 512 512 LEU LEU A . n A 1 370 GLN 370 513 513 GLN GLN A . n A 1 371 ARG 371 514 514 ARG ARG A . n A 1 372 LEU 372 515 515 LEU LEU A . n A 1 373 TYR 373 516 516 TYR TYR A . n A 1 374 ARG 374 517 517 ARG ARG A . n A 1 375 GLN 375 518 518 GLN GLN A . n A 1 376 PHE 376 519 519 PHE PHE A . n A 1 377 SER 377 520 520 SER SER A . n A 1 378 GLU 378 521 521 GLU GLU A . n A 1 379 GLY 379 522 522 GLY GLY A . n B 2 1 DT 1 398 ? ? ? X . n B 2 2 DC 2 399 ? ? ? X . n B 2 3 DC 3 400 ? ? ? X . n B 2 4 DT 4 401 401 DT DT X . n B 2 5 DA 5 402 402 DA DA X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL 1 1 1 GOL GOL A . D 3 GOL 1 526 1 GOL GOL A . E 3 GOL 1 527 1 GOL GOL A . F 4 PO4 1 528 1 PO4 PO4 A . G 5 MG 1 529 1 MG MG A . H 4 PO4 1 523 403 PO4 PO4 X . I 6 HOH 1 2 2 HOH HOH A . I 6 HOH 2 3 3 HOH HOH A . I 6 HOH 3 4 4 HOH HOH A . I 6 HOH 4 5 5 HOH HOH A . I 6 HOH 5 6 6 HOH HOH A . I 6 HOH 6 7 7 HOH HOH A . I 6 HOH 7 8 8 HOH HOH A . I 6 HOH 8 9 9 HOH HOH A . I 6 HOH 9 10 10 HOH HOH A . I 6 HOH 10 11 11 HOH HOH A . I 6 HOH 11 12 12 HOH HOH A . I 6 HOH 12 13 13 HOH HOH A . I 6 HOH 13 14 14 HOH HOH A . I 6 HOH 14 15 15 HOH HOH A . I 6 HOH 15 16 16 HOH HOH A . I 6 HOH 16 17 17 HOH HOH A . I 6 HOH 17 18 18 HOH HOH A . I 6 HOH 18 19 19 HOH HOH A . I 6 HOH 19 20 20 HOH HOH A . I 6 HOH 20 21 21 HOH HOH A . I 6 HOH 21 22 22 HOH HOH A . I 6 HOH 22 24 24 HOH HOH A . I 6 HOH 23 25 25 HOH HOH A . I 6 HOH 24 26 26 HOH HOH A . I 6 HOH 25 27 27 HOH HOH A . I 6 HOH 26 28 28 HOH HOH A . I 6 HOH 27 29 29 HOH HOH A . I 6 HOH 28 30 30 HOH HOH A . I 6 HOH 29 31 31 HOH HOH A . I 6 HOH 30 32 32 HOH HOH A . I 6 HOH 31 33 33 HOH HOH A . I 6 HOH 32 34 34 HOH HOH A . I 6 HOH 33 35 35 HOH HOH A . I 6 HOH 34 36 36 HOH HOH A . I 6 HOH 35 37 37 HOH HOH A . I 6 HOH 36 38 38 HOH HOH A . I 6 HOH 37 39 39 HOH HOH A . I 6 HOH 38 40 40 HOH HOH A . I 6 HOH 39 41 41 HOH HOH A . I 6 HOH 40 42 42 HOH HOH A . I 6 HOH 41 43 43 HOH HOH A . I 6 HOH 42 44 44 HOH HOH A . I 6 HOH 43 45 45 HOH HOH A . I 6 HOH 44 46 46 HOH HOH A . I 6 HOH 45 47 47 HOH HOH A . I 6 HOH 46 48 48 HOH HOH A . I 6 HOH 47 49 49 HOH HOH A . I 6 HOH 48 50 50 HOH HOH A . I 6 HOH 49 51 51 HOH HOH A . I 6 HOH 50 52 52 HOH HOH A . I 6 HOH 51 53 53 HOH HOH A . I 6 HOH 52 54 54 HOH HOH A . I 6 HOH 53 55 55 HOH HOH A . I 6 HOH 54 56 56 HOH HOH A . I 6 HOH 55 57 57 HOH HOH A . I 6 HOH 56 58 58 HOH HOH A . I 6 HOH 57 59 59 HOH HOH A . I 6 HOH 58 60 60 HOH HOH A . I 6 HOH 59 61 61 HOH HOH A . I 6 HOH 60 62 62 HOH HOH A . I 6 HOH 61 63 63 HOH HOH A . I 6 HOH 62 64 64 HOH HOH A . I 6 HOH 63 65 65 HOH HOH A . I 6 HOH 64 67 67 HOH HOH A . I 6 HOH 65 68 68 HOH HOH A . I 6 HOH 66 69 69 HOH HOH A . I 6 HOH 67 70 70 HOH HOH A . I 6 HOH 68 71 71 HOH HOH A . I 6 HOH 69 72 72 HOH HOH A . I 6 HOH 70 73 73 HOH HOH A . I 6 HOH 71 74 74 HOH HOH A . I 6 HOH 72 75 75 HOH HOH A . I 6 HOH 73 76 76 HOH HOH A . I 6 HOH 74 77 77 HOH HOH A . I 6 HOH 75 78 78 HOH HOH A . I 6 HOH 76 79 79 HOH HOH A . I 6 HOH 77 80 80 HOH HOH A . I 6 HOH 78 81 81 HOH HOH A . I 6 HOH 79 82 82 HOH HOH A . I 6 HOH 80 83 83 HOH HOH A . I 6 HOH 81 84 84 HOH HOH A . I 6 HOH 82 85 85 HOH HOH A . I 6 HOH 83 86 86 HOH HOH A . I 6 HOH 84 87 87 HOH HOH A . I 6 HOH 85 88 88 HOH HOH A . I 6 HOH 86 89 89 HOH HOH A . I 6 HOH 87 90 90 HOH HOH A . I 6 HOH 88 91 91 HOH HOH A . I 6 HOH 89 92 92 HOH HOH A . I 6 HOH 90 93 93 HOH HOH A . I 6 HOH 91 94 94 HOH HOH A . I 6 HOH 92 95 95 HOH HOH A . I 6 HOH 93 96 96 HOH HOH A . I 6 HOH 94 97 97 HOH HOH A . I 6 HOH 95 98 98 HOH HOH A . I 6 HOH 96 99 99 HOH HOH A . I 6 HOH 97 100 100 HOH HOH A . I 6 HOH 98 101 101 HOH HOH A . I 6 HOH 99 102 102 HOH HOH A . I 6 HOH 100 103 103 HOH HOH A . I 6 HOH 101 105 105 HOH HOH A . I 6 HOH 102 106 106 HOH HOH A . I 6 HOH 103 107 107 HOH HOH A . I 6 HOH 104 108 108 HOH HOH A . I 6 HOH 105 109 109 HOH HOH A . I 6 HOH 106 110 110 HOH HOH A . I 6 HOH 107 111 111 HOH HOH A . I 6 HOH 108 112 112 HOH HOH A . I 6 HOH 109 113 113 HOH HOH A . I 6 HOH 110 114 114 HOH HOH A . I 6 HOH 111 115 115 HOH HOH A . I 6 HOH 112 116 116 HOH HOH A . I 6 HOH 113 117 117 HOH HOH A . I 6 HOH 114 118 118 HOH HOH A . I 6 HOH 115 119 119 HOH HOH A . I 6 HOH 116 120 120 HOH HOH A . I 6 HOH 117 121 121 HOH HOH A . I 6 HOH 118 122 122 HOH HOH A . I 6 HOH 119 123 123 HOH HOH A . I 6 HOH 120 124 124 HOH HOH A . I 6 HOH 121 125 125 HOH HOH A . I 6 HOH 122 126 126 HOH HOH A . I 6 HOH 123 127 127 HOH HOH A . I 6 HOH 124 128 128 HOH HOH A . I 6 HOH 125 129 129 HOH HOH A . I 6 HOH 126 130 130 HOH HOH A . I 6 HOH 127 132 132 HOH HOH A . I 6 HOH 128 133 133 HOH HOH A . I 6 HOH 129 134 134 HOH HOH A . I 6 HOH 130 135 135 HOH HOH A . I 6 HOH 131 136 136 HOH HOH A . I 6 HOH 132 137 137 HOH HOH A . I 6 HOH 133 138 138 HOH HOH A . I 6 HOH 134 139 139 HOH HOH A . I 6 HOH 135 140 140 HOH HOH A . I 6 HOH 136 141 141 HOH HOH A . I 6 HOH 137 142 142 HOH HOH A . I 6 HOH 138 143 143 HOH HOH A . I 6 HOH 139 530 1 HOH HOH A . I 6 HOH 140 531 144 HOH HOH A . I 6 HOH 141 532 145 HOH HOH A . I 6 HOH 142 533 146 HOH HOH A . I 6 HOH 143 534 147 HOH HOH A . I 6 HOH 144 535 148 HOH HOH A . I 6 HOH 145 536 149 HOH HOH A . I 6 HOH 146 537 150 HOH HOH A . I 6 HOH 147 538 151 HOH HOH A . I 6 HOH 148 539 152 HOH HOH A . I 6 HOH 149 540 153 HOH HOH A . I 6 HOH 150 541 154 HOH HOH A . I 6 HOH 151 542 155 HOH HOH A . I 6 HOH 152 543 157 HOH HOH A . I 6 HOH 153 544 158 HOH HOH A . I 6 HOH 154 545 159 HOH HOH A . I 6 HOH 155 546 160 HOH HOH A . I 6 HOH 156 547 161 HOH HOH A . I 6 HOH 157 548 162 HOH HOH A . I 6 HOH 158 549 163 HOH HOH A . I 6 HOH 159 550 164 HOH HOH A . I 6 HOH 160 551 165 HOH HOH A . I 6 HOH 161 552 166 HOH HOH A . I 6 HOH 162 553 167 HOH HOH A . I 6 HOH 163 554 168 HOH HOH A . I 6 HOH 164 555 169 HOH HOH A . I 6 HOH 165 556 170 HOH HOH A . I 6 HOH 166 557 171 HOH HOH A . I 6 HOH 167 558 172 HOH HOH A . I 6 HOH 168 559 173 HOH HOH A . I 6 HOH 169 560 174 HOH HOH A . I 6 HOH 170 561 175 HOH HOH A . I 6 HOH 171 562 176 HOH HOH A . I 6 HOH 172 563 177 HOH HOH A . I 6 HOH 173 564 178 HOH HOH A . I 6 HOH 174 565 179 HOH HOH A . I 6 HOH 175 566 180 HOH HOH A . I 6 HOH 176 567 181 HOH HOH A . I 6 HOH 177 568 182 HOH HOH A . I 6 HOH 178 569 183 HOH HOH A . I 6 HOH 179 570 184 HOH HOH A . I 6 HOH 180 571 185 HOH HOH A . I 6 HOH 181 572 186 HOH HOH A . I 6 HOH 182 573 187 HOH HOH A . I 6 HOH 183 574 188 HOH HOH A . I 6 HOH 184 575 189 HOH HOH A . I 6 HOH 185 576 190 HOH HOH A . I 6 HOH 186 578 192 HOH HOH A . I 6 HOH 187 579 193 HOH HOH A . I 6 HOH 188 580 194 HOH HOH A . I 6 HOH 189 581 195 HOH HOH A . I 6 HOH 190 582 196 HOH HOH A . I 6 HOH 191 583 197 HOH HOH A . I 6 HOH 192 584 198 HOH HOH A . I 6 HOH 193 585 199 HOH HOH A . I 6 HOH 194 586 200 HOH HOH A . I 6 HOH 195 587 201 HOH HOH A . I 6 HOH 196 588 202 HOH HOH A . J 6 HOH 1 23 23 HOH HOH X . J 6 HOH 2 66 66 HOH HOH X . J 6 HOH 3 104 104 HOH HOH X . J 6 HOH 4 131 131 HOH HOH X . J 6 HOH 5 577 191 HOH HOH X . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 76 A MSE 219 ? MET SELENOMETHIONINE 2 A MSE 121 A MSE 264 ? MET SELENOMETHIONINE 3 A MSE 322 A MSE 465 ? MET SELENOMETHIONINE 4 A MSE 333 A MSE 476 ? MET SELENOMETHIONINE 5 A MSE 335 A MSE 478 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2430 ? 1 MORE -28 ? 1 'SSA (A^2)' 17890 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1 ? H PO4 . ? X PO4 523 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 O ? A ASP 29 ? A ASP 172 ? 1_555 82.2 ? 2 O1 ? H PO4 . ? X PO4 523 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 OD1 ? A ASP 145 ? A ASP 288 ? 1_555 138.2 ? 3 O ? A ASP 29 ? A ASP 172 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 OD1 ? A ASP 145 ? A ASP 288 ? 1_555 85.8 ? 4 O1 ? H PO4 . ? X PO4 523 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 OD2 ? A ASP 145 ? A ASP 288 ? 1_555 171.4 ? 5 O ? A ASP 29 ? A ASP 172 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 OD2 ? A ASP 145 ? A ASP 288 ? 1_555 92.6 ? 6 OD1 ? A ASP 145 ? A ASP 288 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 OD2 ? A ASP 145 ? A ASP 288 ? 1_555 47.4 ? 7 O1 ? H PO4 . ? X PO4 523 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 O ? I HOH . ? A HOH 5 ? 1_555 84.8 ? 8 O ? A ASP 29 ? A ASP 172 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 O ? I HOH . ? A HOH 5 ? 1_555 165.7 ? 9 OD1 ? A ASP 145 ? A ASP 288 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 O ? I HOH . ? A HOH 5 ? 1_555 100.2 ? 10 OD2 ? A ASP 145 ? A ASP 288 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 O ? I HOH . ? A HOH 5 ? 1_555 100.9 ? 11 O1 ? H PO4 . ? X PO4 523 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 O ? I HOH . ? A HOH 20 ? 1_555 111.0 ? 12 O ? A ASP 29 ? A ASP 172 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 O ? I HOH . ? A HOH 20 ? 1_555 76.7 ? 13 OD1 ? A ASP 145 ? A ASP 288 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 O ? I HOH . ? A HOH 20 ? 1_555 104.8 ? 14 OD2 ? A ASP 145 ? A ASP 288 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 O ? I HOH . ? A HOH 20 ? 1_555 61.0 ? 15 O ? I HOH . ? A HOH 5 ? 1_555 MG ? G MG . ? A MG 529 ? 1_555 O ? I HOH . ? A HOH 20 ? 1_555 113.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-14 2 'Structure model' 1 1 2012-08-29 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -1.0291 -2.6612 -46.4129 0.1285 0.1173 0.1570 -0.0283 -0.0005 -0.0623 0.6009 0.3128 0.5305 -0.1133 0.2890 0.0895 -0.0556 -0.0172 -0.0568 0.2219 -0.3388 -0.0235 0.0097 0.2073 0.1310 'X-RAY DIFFRACTION' 2 ? refined -4.5387 -9.2731 -38.6795 0.2288 -0.1306 0.2448 0.0497 -0.0138 -0.0915 0.1921 0.2661 0.3465 -0.0650 0.1515 -0.0007 0.0215 0.0816 0.2586 0.0636 -0.3130 0.0147 -0.0076 0.3867 0.0883 'X-RAY DIFFRACTION' 3 ? refined -4.6894 7.0730 -41.9113 0.1078 -0.2463 0.0931 -0.0539 0.0105 -0.0714 1.8807 0.5922 0.1278 0.0754 -0.4335 0.0146 -0.0314 -0.0214 0.0693 0.3560 0.0540 0.0292 -0.0393 -0.1090 -0.0500 'X-RAY DIFFRACTION' 4 ? refined -11.1186 11.8944 -50.1668 0.1296 0.1978 0.1024 0.0425 0.0102 0.0021 0.5022 1.2769 0.6910 -0.1883 -0.4246 0.7857 0.0488 -0.1181 -0.0759 0.2534 0.0587 0.3176 -0.2076 -0.3413 -0.4040 'X-RAY DIFFRACTION' 5 ? refined -16.7904 29.6803 -15.8648 0.3463 0.3798 0.1710 0.1009 -0.0184 -0.0660 1.3495 0.0577 1.2023 -0.1845 0.0025 0.1013 -0.2588 0.0303 -0.2975 -0.7408 0.3624 -0.1380 -0.0762 -0.6709 -0.0686 'X-RAY DIFFRACTION' 6 ? refined -23.9954 23.1073 -9.6474 0.0318 0.6996 -0.8286 0.1273 0.0787 -0.2178 1.2316 0.2073 0.3146 -0.1882 0.5934 -0.0466 0.0195 0.0866 0.4173 -1.4566 0.2471 0.4243 0.6998 -0.2254 -0.7220 'X-RAY DIFFRACTION' 7 ? refined -23.4160 11.5266 -20.9454 0.2707 0.3938 0.3800 0.0015 -0.0131 0.1650 0.3364 0.2273 0.3533 -0.0280 0.0980 0.2675 -0.1358 0.0269 -0.0588 -0.1225 -0.4817 -0.1600 0.0969 0.5026 0.0217 'X-RAY DIFFRACTION' 8 ? refined -16.8480 25.0436 -22.7248 0.2336 0.2325 0.2352 0.0871 -0.0578 -0.2284 0.4216 0.2403 0.0943 -0.1901 0.0900 -0.1314 -0.1504 0.1280 -0.0999 -0.5509 0.3733 -0.1363 0.0588 -0.3315 -0.3195 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 144 A 217 ;chain 'A' and (resseq 144:217) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 218 A 242 ;chain 'A' and (resseq 218:242) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 243 A 316 ;chain 'A' and (resseq 243:316) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 317 A 341 ;chain 'A' and (resseq 317:341) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 342 A 384 ;chain 'A' and (resseq 342:384) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 385 A 466 ;chain 'A' and (resseq 385:466) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 467 A 484 ;chain 'A' and (resseq 467:484) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 485 A 522 ;chain 'A' and (resseq 485:522) ; ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHENIX 1.7.2_869 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 Blu-Ice . ? ? ? ? 'data collection' ? ? ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HO3 A GOL 526 ? ? O A HOH 29 ? ? 1.59 2 1 OE2 A GLU 492 ? ? O A HOH 89 ? ? 1.90 3 1 O A PRO 354 ? ? O A HOH 80 ? ? 2.01 4 1 ND2 A ASN 422 ? ? O A HOH 101 ? ? 2.05 5 1 OG A SER 357 ? ? O A HOH 93 ? ? 2.08 6 1 O A GLU 492 ? ? O A HOH 103 ? ? 2.10 7 1 O A ASP 304 ? ? O A HOH 73 ? ? 2.14 8 1 O A HOH 86 ? ? O A HOH 137 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 171 ? ? -94.74 -72.11 2 1 THR A 174 ? ? -127.93 -51.83 3 1 PRO A 298 ? ? -31.16 123.86 4 1 PHE A 372 ? ? -47.47 151.47 5 1 THR A 397 ? ? -94.75 -60.12 6 1 LEU A 398 ? ? -53.43 -81.13 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 395 ? CG ? A ARG 252 CG 2 1 Y 1 A ARG 395 ? CD ? A ARG 252 CD 3 1 Y 1 A ARG 395 ? NE ? A ARG 252 NE 4 1 Y 1 A ARG 395 ? CZ ? A ARG 252 CZ 5 1 Y 1 A ARG 395 ? NH1 ? A ARG 252 NH1 6 1 Y 1 A ARG 395 ? NH2 ? A ARG 252 NH2 7 1 Y 1 A GLN 402 ? CG ? A GLN 259 CG 8 1 Y 1 A GLN 402 ? CD ? A GLN 259 CD 9 1 Y 1 A GLN 402 ? OE1 ? A GLN 259 OE1 10 1 Y 1 A GLN 402 ? NE2 ? A GLN 259 NE2 11 1 Y 1 A GLN 505 ? CG ? A GLN 362 CG 12 1 Y 1 A GLN 505 ? CD ? A GLN 362 CD 13 1 Y 1 A GLN 505 ? OE1 ? A GLN 362 OE1 14 1 Y 1 A GLN 505 ? NE2 ? A GLN 362 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 506 ? A GLU 363 2 1 Y 1 A HIS 507 ? A HIS 364 3 1 Y 1 X DT 398 ? B DT 1 4 1 Y 1 X DC 399 ? B DC 2 5 1 Y 1 X DC 400 ? B DC 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 'PHOSPHATE ION' PO4 5 'MAGNESIUM ION' MG 6 water HOH #