HEADER HYDROLASE 16-OCT-11 3U8D TITLE FUNCTIONALLY SELECTIVE INHIBITION OF GROUP IIA PHOSPHOLIPASE A2 TITLE 2 REVEALS A ROLE FOR VIMENTIN IN REGULATING ARACHIDONIC ACID METABOLISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLIPASE A2, MEMBRANE ASSOCIATED; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GIIC SPLA2, GROUP IIA PHOSPHOLIPASE A2, NON-PANCREATIC COMPND 5 SECRETORY PHOSPHOLIPASE A2, NPS-PLA2, PHOSPHATIDYLCHOLINE 2- COMPND 6 ACYLHYDROLASE 2A; COMPND 7 EC: 3.1.1.4; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLA2G2A, PLA2B, PLA2L, RASF-A; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS SECRETED PHOSPHOLIPASE A2, PHOSPHOLIPASE A2 ACTIVITY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.K.LEE,K.J.BRYANT,R.BOUVERET,P.-W.LEI,A.P.DUFF,S.J.HARROP,E.P.HUANG, AUTHOR 2 R.P.HARVEY,M.H.GELB,P.P.GRAY,P.M.CURMI,A.M.CUNNINGHAM,W.B.CHURCH, AUTHOR 3 K.F.SCOTT REVDAT 3 17-JUL-19 3U8D 1 REMARK REVDAT 2 12-JUN-13 3U8D 1 JRNL REVDAT 1 17-OCT-12 3U8D 0 JRNL AUTH L.K.LEE,K.J.BRYANT,R.BOUVERET,P.W.LEI,A.P.DUFF,S.J.HARROP, JRNL AUTH 2 E.P.HUANG,R.P.HARVEY,M.H.GELB,P.P.GRAY,P.M.CURMI, JRNL AUTH 3 A.M.CUNNINGHAM,W.B.CHURCH,K.F.SCOTT JRNL TITL SELECTIVE INHIBITION OF HUMAN GROUP IIA-SECRETED JRNL TITL 2 PHOSPHOLIPASE A2 (HGIIA) SIGNALING REVEALS ARACHIDONIC ACID JRNL TITL 3 METABOLISM IS ASSOCIATED WITH COLOCALIZATION OF HGIIA TO JRNL TITL 4 VIMENTIN IN RHEUMATOID SYNOVIOCYTES. JRNL REF J.BIOL.CHEM. V. 288 15269 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23482564 JRNL DOI 10.1074/JBC.M112.397893 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.121 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.8832 - 4.4271 0.92 1833 148 0.1145 0.1613 REMARK 3 2 4.4271 - 3.5244 0.92 1769 144 0.0844 0.1304 REMARK 3 3 3.5244 - 3.0820 0.92 1751 139 0.1010 0.1722 REMARK 3 4 3.0820 - 2.8016 0.93 1743 138 0.1235 0.2023 REMARK 3 5 2.8016 - 2.6016 0.93 1729 135 0.1192 0.2203 REMARK 3 6 2.6016 - 2.4487 0.92 1723 142 0.1215 0.1898 REMARK 3 7 2.4487 - 2.3264 0.93 1711 138 0.1275 0.1620 REMARK 3 8 2.3264 - 2.2253 0.93 1715 139 0.1339 0.1930 REMARK 3 9 2.2253 - 2.1398 0.92 1722 141 0.1308 0.1836 REMARK 3 10 2.1398 - 2.0661 0.93 1704 138 0.1350 0.1984 REMARK 3 11 2.0661 - 2.0016 0.92 1715 143 0.1402 0.2197 REMARK 3 12 2.0016 - 1.9445 0.92 1712 140 0.1515 0.2586 REMARK 3 13 1.9445 - 1.8934 0.92 1694 138 0.1598 0.2283 REMARK 3 14 1.8934 - 1.8472 0.92 1711 136 0.1666 0.2375 REMARK 3 15 1.8472 - 1.8050 0.90 1662 137 0.1821 0.3031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 33.77 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.93040 REMARK 3 B22 (A**2) : 2.93040 REMARK 3 B33 (A**2) : -5.86080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5000 REMARK 3 OPERATOR: H, K, L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 2115 REMARK 3 ANGLE : 1.209 2859 REMARK 3 CHIRALITY : 0.091 278 REMARK 3 PLANARITY : 0.004 356 REMARK 3 DIHEDRAL : 21.494 805 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: A REMARK 3 SELECTION : B REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3U8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90020 REMARK 200 MONOCHROMATOR : BENT GE(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28140 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.801 REMARK 200 RESOLUTION RANGE LOW (A) : 37.178 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 7.4, 10 MM CACL2, REMARK 280 0.5 MM BETA-OCTYL GLUCOSIDE AND 4 M NACL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.22467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.44933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.44933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.22467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL B 205 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 351 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 417 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 458 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 57 NE CZ NH1 NH2 REMARK 480 ASP A 81 CG OD1 OD2 REMARK 480 ARG A 123 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 56 O HOH A 390 1.35 REMARK 500 HZ3 LYS A 10 O HOH A 440 1.49 REMARK 500 HE2 HIS A 6 OE1 GLU A 16 1.55 REMARK 500 O HOH A 416 O HOH A 430 1.84 REMARK 500 NZ LYS A 10 O HOH A 440 1.85 REMARK 500 O HOH B 376 O HOH B 420 1.86 REMARK 500 O HOH B 390 O HOH B 443 1.97 REMARK 500 O HOH B 411 O HOH B 439 1.97 REMARK 500 O HOH B 362 O HOH B 406 2.00 REMARK 500 O HOH A 403 O HOH B 362 2.01 REMARK 500 O HOH A 419 O HOH A 465 2.08 REMARK 500 O HOH A 389 O HOH A 422 2.09 REMARK 500 O HOH A 358 O HOH A 426 2.09 REMARK 500 NZ LYS A 56 O HOH A 390 2.09 REMARK 500 OD2 ASP B 81 O HOH B 429 2.09 REMARK 500 O HOH A 301 O HOH A 364 2.11 REMARK 500 OD1 ASP A 81 O HOH A 457 2.11 REMARK 500 OG1 THR A 61 O HOH A 354 2.13 REMARK 500 O HOH A 318 O HOH A 448 2.14 REMARK 500 O HOH A 386 O HOH A 416 2.15 REMARK 500 O HOH A 323 O HOH A 443 2.15 REMARK 500 NZ LYS B 79 O HOH B 417 2.16 REMARK 500 O HOH B 396 O HOH B 421 2.16 REMARK 500 O HOH A 345 O HOH B 363 2.16 REMARK 500 O HOH B 392 O HOH B 430 2.16 REMARK 500 OD1 ASP B 81 O HOH B 429 2.18 REMARK 500 O HOH A 332 O HOH A 434 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 364 O HOH B 371 5665 1.93 REMARK 500 O HOH A 393 O HOH A 402 4555 1.97 REMARK 500 O HOH A 450 O HOH A 450 4555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -168.49 -167.92 REMARK 500 THR A 61 -81.68 -133.63 REMARK 500 THR B 61 -80.65 -132.77 REMARK 500 ARG B 118 -171.51 -174.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U8D B 201 O29 REMARK 620 2 GLY B 29 O 87.5 REMARK 620 3 HIS B 27 O 160.4 91.1 REMARK 620 4 GLY B 31 O 80.3 87.4 80.2 REMARK 620 5 ASP B 48 OD1 76.7 134.5 117.0 129.9 REMARK 620 6 ASP B 48 OD2 85.2 168.3 92.7 82.3 52.1 REMARK 620 7 U8D B 201 O22 121.5 73.5 76.5 149.3 79.1 118.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 O REMARK 620 2 GLY A 29 O 92.2 REMARK 620 3 GLY A 31 O 78.6 81.9 REMARK 620 4 ASP A 48 OD2 91.0 167.0 86.5 REMARK 620 5 ASP A 48 OD1 119.9 135.5 131.0 51.4 REMARK 620 6 U8D A 201 O29 155.3 89.2 77.2 82.7 74.0 REMARK 620 7 U8D A 201 O22 79.6 75.7 147.9 117.3 80.6 124.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 112 O REMARK 620 2 GLY B 25 O 90.1 REMARK 620 3 ASN B 114 OD1 98.0 93.5 REMARK 620 4 PHE B 23 O 86.1 92.6 172.6 REMARK 620 5 HOH B 343 O 95.8 174.1 85.8 87.8 REMARK 620 6 HOH B 310 O 165.3 80.2 93.6 83.3 94.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 112 O REMARK 620 2 ASN A 114 OD1 95.7 REMARK 620 3 GLY A 25 O 93.2 92.2 REMARK 620 4 PHE A 23 O 85.0 171.9 95.9 REMARK 620 5 HOH A 307 O 98.4 82.3 167.6 89.6 REMARK 620 6 HOH A 310 O 167.5 96.2 82.8 83.7 86.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U8D A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U8D B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U8B RELATED DB: PDB REMARK 900 RELATED ID: 3U8H RELATED DB: PDB REMARK 900 RELATED ID: 3U8I RELATED DB: PDB DBREF 3U8D A 1 124 UNP P14555 PA2GA_HUMAN 21 144 DBREF 3U8D B 1 124 UNP P14555 PA2GA_HUMAN 21 144 SEQRES 1 A 124 ASN LEU VAL ASN PHE HIS ARG MET ILE LYS LEU THR THR SEQRES 2 A 124 GLY LYS GLU ALA ALA LEU SER TYR GLY PHE TYR GLY CYS SEQRES 3 A 124 HIS CYS GLY VAL GLY GLY ARG GLY SER PRO LYS ASP ALA SEQRES 4 A 124 THR ASP ARG CYS CYS VAL THR HIS ASP CYS CYS TYR LYS SEQRES 5 A 124 ARG LEU GLU LYS ARG GLY CYS GLY THR LYS PHE LEU SER SEQRES 6 A 124 TYR LYS PHE SER ASN SER GLY SER ARG ILE THR CYS ALA SEQRES 7 A 124 LYS GLN ASP SER CYS ARG SER GLN LEU CYS GLU CYS ASP SEQRES 8 A 124 LYS ALA ALA ALA THR CYS PHE ALA ARG ASN LYS THR THR SEQRES 9 A 124 TYR ASN LYS LYS TYR GLN TYR TYR SER ASN LYS HIS CYS SEQRES 10 A 124 ARG GLY SER THR PRO ARG CYS SEQRES 1 B 124 ASN LEU VAL ASN PHE HIS ARG MET ILE LYS LEU THR THR SEQRES 2 B 124 GLY LYS GLU ALA ALA LEU SER TYR GLY PHE TYR GLY CYS SEQRES 3 B 124 HIS CYS GLY VAL GLY GLY ARG GLY SER PRO LYS ASP ALA SEQRES 4 B 124 THR ASP ARG CYS CYS VAL THR HIS ASP CYS CYS TYR LYS SEQRES 5 B 124 ARG LEU GLU LYS ARG GLY CYS GLY THR LYS PHE LEU SER SEQRES 6 B 124 TYR LYS PHE SER ASN SER GLY SER ARG ILE THR CYS ALA SEQRES 7 B 124 LYS GLN ASP SER CYS ARG SER GLN LEU CYS GLU CYS ASP SEQRES 8 B 124 LYS ALA ALA ALA THR CYS PHE ALA ARG ASN LYS THR THR SEQRES 9 B 124 TYR ASN LYS LYS TYR GLN TYR TYR SER ASN LYS HIS CYS SEQRES 10 B 124 ARG GLY SER THR PRO ARG CYS HET U8D A 201 30 HET CA A 202 1 HET CA A 203 1 HET CL A 204 1 HET CL A 205 1 HET U8D B 201 30 HET CA B 202 1 HET CA B 203 1 HET CL B 204 1 HET CL B 205 1 HETNAM U8D (3-{[3-(2-AMINO-2-OXOETHYL)-1-BENZYL-2-ETHYL-1H-INDOL- HETNAM 2 U8D 5-YL]OXY}PROPYL)PHOSPHONIC ACID HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 3 U8D 2(C22 H27 N2 O5 P) FORMUL 4 CA 4(CA 2+) FORMUL 6 CL 4(CL 1-) FORMUL 13 HOH *335(H2 O) HELIX 1 1 ASN A 1 GLY A 14 1 14 HELIX 2 2 GLU A 16 TYR A 21 1 6 HELIX 3 3 ASP A 38 ARG A 57 1 20 HELIX 4 4 ASP A 81 ASN A 101 1 21 HELIX 5 5 LYS A 102 TYR A 105 5 4 HELIX 6 6 SER A 113 CYS A 117 5 5 HELIX 7 7 LEU B 2 GLY B 14 1 13 HELIX 8 8 GLU B 16 TYR B 21 1 6 HELIX 9 9 ASP B 38 ARG B 57 1 20 HELIX 10 10 ASP B 81 ASN B 101 1 21 HELIX 11 11 LYS B 102 TYR B 105 5 4 HELIX 12 12 SER B 113 CYS B 117 5 5 SHEET 1 A 2 PHE A 68 SER A 71 0 SHEET 2 A 2 ARG A 74 CYS A 77 -1 O THR A 76 N SER A 69 SHEET 1 B 2 PHE B 68 SER B 71 0 SHEET 2 B 2 ARG B 74 CYS B 77 -1 O THR B 76 N SER B 69 SSBOND 1 CYS A 26 CYS A 117 1555 1555 2.03 SSBOND 2 CYS A 28 CYS A 44 1555 1555 2.03 SSBOND 3 CYS A 43 CYS A 97 1555 1555 2.04 SSBOND 4 CYS A 49 CYS A 124 1555 1555 2.04 SSBOND 5 CYS A 50 CYS A 90 1555 1555 2.01 SSBOND 6 CYS A 59 CYS A 83 1555 1555 2.03 SSBOND 7 CYS A 77 CYS A 88 1555 1555 2.03 SSBOND 8 CYS B 26 CYS B 117 1555 1555 2.04 SSBOND 9 CYS B 28 CYS B 44 1555 1555 2.04 SSBOND 10 CYS B 43 CYS B 97 1555 1555 2.04 SSBOND 11 CYS B 49 CYS B 124 1555 1555 2.05 SSBOND 12 CYS B 50 CYS B 90 1555 1555 2.02 SSBOND 13 CYS B 59 CYS B 83 1555 1555 2.05 SSBOND 14 CYS B 77 CYS B 88 1555 1555 2.05 LINK O29 U8D B 201 CA CA B 202 1555 1555 2.24 LINK O GLY B 29 CA CA B 202 1555 1555 2.26 LINK O HIS A 27 CA CA A 202 1555 1555 2.28 LINK O TYR B 112 CA CA B 203 1555 1555 2.33 LINK O HIS B 27 CA CA B 202 1555 1555 2.33 LINK O TYR A 112 CA CA A 203 1555 1555 2.37 LINK OD1 ASN A 114 CA CA A 203 1555 1555 2.41 LINK O GLY A 29 CA CA A 202 1555 1555 2.42 LINK O GLY B 31 CA CA B 202 1555 1555 2.46 LINK O GLY A 31 CA CA A 202 1555 1555 2.47 LINK O GLY A 25 CA CA A 203 1555 1555 2.47 LINK OD1 ASP B 48 CA CA B 202 1555 1555 2.47 LINK OD2 ASP A 48 CA CA A 202 1555 1555 2.48 LINK O GLY B 25 CA CA B 203 1555 1555 2.49 LINK OD1 ASN B 114 CA CA B 203 1555 1555 2.49 LINK OD2 ASP B 48 CA CA B 202 1555 1555 2.53 LINK O PHE A 23 CA CA A 203 1555 1555 2.56 LINK OD1 ASP A 48 CA CA A 202 1555 1555 2.57 LINK O PHE B 23 CA CA B 203 1555 1555 2.57 LINK O22 U8D B 201 CA CA B 202 1555 1555 2.61 LINK CA CA A 203 O HOH A 307 1555 1555 2.34 LINK CA CA B 203 O HOH B 343 1555 1555 2.38 LINK CA CA B 203 O HOH B 310 1555 1555 2.44 LINK CA CA A 203 O HOH A 310 1555 1555 2.46 LINK O29 U8D A 201 CA CA A 202 1555 1555 2.32 LINK O22 U8D A 201 CA CA A 202 1555 1555 2.55 SITE 1 AC1 20 LEU A 2 HIS A 6 ILE A 9 TYR A 21 SITE 2 AC1 20 GLY A 22 HIS A 27 CYS A 28 GLY A 29 SITE 3 AC1 20 GLY A 31 HIS A 47 ASP A 48 LYS A 62 SITE 4 AC1 20 PHE A 98 CA A 202 HOH A 306 HOH A 328 SITE 5 AC1 20 HOH A 348 HOH A 376 HOH A 395 LEU B 19 SITE 1 AC2 5 HIS A 27 GLY A 29 GLY A 31 ASP A 48 SITE 2 AC2 5 U8D A 201 SITE 1 AC3 6 PHE A 23 GLY A 25 TYR A 112 ASN A 114 SITE 2 AC3 6 HOH A 307 HOH A 310 SITE 1 AC4 4 PHE A 63 SER A 65 ARG A 84 LYS A 108 SITE 1 AC5 2 ILE A 75 LYS A 92 SITE 1 AC6 20 LEU A 19 HOH A 329 LEU B 2 HIS B 6 SITE 2 AC6 20 ILE B 9 TYR B 21 GLY B 22 HIS B 27 SITE 3 AC6 20 CYS B 28 GLY B 29 GLY B 31 HIS B 47 SITE 4 AC6 20 ASP B 48 TYR B 51 LYS B 62 CA B 202 SITE 5 AC6 20 HOH B 305 HOH B 321 HOH B 351 HOH B 394 SITE 1 AC7 5 HIS B 27 GLY B 29 GLY B 31 ASP B 48 SITE 2 AC7 5 U8D B 201 SITE 1 AC8 6 PHE B 23 GLY B 25 TYR B 112 ASN B 114 SITE 2 AC8 6 HOH B 310 HOH B 343 SITE 1 AC9 4 ASN B 4 ARG B 7 PHE B 68 ARG B 118 SITE 1 BC1 1 GLN B 86 CRYST1 74.422 74.422 93.674 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013437 0.007758 0.000000 0.00000 SCALE2 0.000000 0.015516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010675 0.00000