HEADER HYDROLASE 17-OCT-11 3U96 TITLE CRYSTAL STRUCTURE OF YOPHQ357F(CATALYTIC DOMAIN, RESIDUES 163-468) IN TITLE 2 COMPLEX WITH PNCS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE YOPH; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 163-468; COMPND 5 SYNONYM: VIRULENCE PROTEIN; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 630; SOURCE 4 GENE: YOP51, YOPH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS YOPH, PTPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.HO,S.KE REVDAT 3 20-MAR-24 3U96 1 REMARK SEQADV REVDAT 2 08-NOV-17 3U96 1 REMARK REVDAT 1 29-AUG-12 3U96 0 JRNL AUTH S.KE,M.C.HO,N.ZHADIN,H.DENG,R.CALLENDER JRNL TITL INVESTIGATION OF CATALYTIC LOOP STRUCTURE, DYNAMICS, AND JRNL TITL 2 FUNCTION RELATIONSHIP OF YERSINIA PROTEIN TYROSINE JRNL TITL 3 PHOSPHATASE BY TEMPERATURE-JUMP RELAXATION SPECTROSCOPY AND JRNL TITL 4 X-RAY STRUCTURAL DETERMINATION. JRNL REF J.PHYS.CHEM.B V. 116 6166 2012 JRNL REFN ISSN 1089-5647 JRNL PMID 22564106 JRNL DOI 10.1021/JP3037846 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 54165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2745 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 173 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 309 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -1.22000 REMARK 3 B12 (A**2) : -0.95000 REMARK 3 B13 (A**2) : -1.52000 REMARK 3 B23 (A**2) : -0.56000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.405 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4568 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6202 ; 1.387 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 595 ; 5.841 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;34.601 ;23.623 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 809 ;12.765 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;18.183 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 700 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3497 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2905 ; 0.822 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4703 ; 1.573 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1663 ; 2.697 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1499 ; 4.460 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3U96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : 2000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54165 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 59.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 10000, 0.1M HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 163 REMARK 465 ARG A 164 REMARK 465 GLU A 165 REMARK 465 ARG A 166 REMARK 465 PRO A 167 REMARK 465 HIS A 168 REMARK 465 THR A 169 REMARK 465 SER A 170 REMARK 465 GLY A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 GLY A 174 REMARK 465 ALA A 175 REMARK 465 GLY A 176 REMARK 465 GLU A 177 REMARK 465 ALA A 178 REMARK 465 ARG A 179 REMARK 465 ALA A 180 REMARK 465 THR A 181 REMARK 465 ALA A 182 REMARK 465 PRO A 183 REMARK 465 SER A 184 REMARK 465 THR A 185 REMARK 465 VAL A 186 REMARK 465 PRO B 163 REMARK 465 ARG B 164 REMARK 465 GLU B 165 REMARK 465 ARG B 166 REMARK 465 PRO B 167 REMARK 465 HIS B 168 REMARK 465 THR B 169 REMARK 465 SER B 170 REMARK 465 GLY B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 GLY B 174 REMARK 465 ALA B 175 REMARK 465 GLY B 176 REMARK 465 GLU B 177 REMARK 465 ALA B 178 REMARK 465 ARG B 179 REMARK 465 ALA B 180 REMARK 465 THR B 181 REMARK 465 ALA B 182 REMARK 465 PRO B 183 REMARK 465 SER B 184 REMARK 465 THR B 185 REMARK 465 VAL B 186 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 221 CA - CB - SG ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG A 295 NE - CZ - NH1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 295 NE - CZ - NH2 ANGL. DEV. = 6.1 DEGREES REMARK 500 MET B 432 CG - SD - CE ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 318 -129.13 -118.21 REMARK 500 CYS A 403 -119.05 -112.52 REMARK 500 GLN A 426 -0.65 76.73 REMARK 500 GLN A 426 -0.65 80.13 REMARK 500 ARG A 440 -73.71 -140.81 REMARK 500 VAL A 445 79.01 68.75 REMARK 500 THR B 318 -130.68 -117.71 REMARK 500 CYS B 403 -115.69 -117.18 REMARK 500 ARG B 440 -73.64 -135.53 REMARK 500 VAL B 445 83.88 68.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CSN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 469 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CSN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 DBREF 3U96 A 163 468 UNP P15273 YOPH_YEREN 163 468 DBREF 3U96 B 163 468 UNP P15273 YOPH_YEREN 163 468 SEQADV 3U96 ARG A 235 UNP P15273 CYS 235 ENGINEERED MUTATION SEQADV 3U96 PHE A 357 UNP P15273 GLN 357 ENGINEERED MUTATION SEQADV 3U96 ARG B 235 UNP P15273 CYS 235 ENGINEERED MUTATION SEQADV 3U96 PHE B 357 UNP P15273 GLN 357 ENGINEERED MUTATION SEQRES 1 A 306 PRO ARG GLU ARG PRO HIS THR SER GLY HIS HIS GLY ALA SEQRES 2 A 306 GLY GLU ALA ARG ALA THR ALA PRO SER THR VAL SER PRO SEQRES 3 A 306 TYR GLY PRO GLU ALA ARG ALA GLU LEU SER SER ARG LEU SEQRES 4 A 306 THR THR LEU ARG ASN THR LEU ALA PRO ALA THR ASN ASP SEQRES 5 A 306 PRO ARG TYR LEU GLN ALA CYS GLY GLY GLU LYS LEU ASN SEQRES 6 A 306 ARG PHE ARG ASP ILE GLN CYS ARG ARG GLN THR ALA VAL SEQRES 7 A 306 ARG ALA ASP LEU ASN ALA ASN TYR ILE GLN VAL GLY ASN SEQRES 8 A 306 THR ARG THR ILE ALA CYS GLN TYR PRO LEU GLN SER GLN SEQRES 9 A 306 LEU GLU SER HIS PHE ARG MET LEU ALA GLU ASN ARG THR SEQRES 10 A 306 PRO VAL LEU ALA VAL LEU ALA SER SER SER GLU ILE ALA SEQRES 11 A 306 ASN GLN ARG PHE GLY MET PRO ASP TYR PHE ARG GLN SER SEQRES 12 A 306 GLY THR TYR GLY SER ILE THR VAL GLU SER LYS MET THR SEQRES 13 A 306 GLN GLN VAL GLY LEU GLY ASP GLY ILE MET ALA ASP MET SEQRES 14 A 306 TYR THR LEU THR ILE ARG GLU ALA GLY GLN LYS THR ILE SEQRES 15 A 306 SER VAL PRO VAL VAL HIS VAL GLY ASN TRP PRO ASP PHE SEQRES 16 A 306 THR ALA VAL SER SER GLU VAL THR LYS ALA LEU ALA SER SEQRES 17 A 306 LEU VAL ASP GLN THR ALA GLU THR LYS ARG ASN MET TYR SEQRES 18 A 306 GLU SER LYS GLY SER SER ALA VAL ALA ASP ASP SER LYS SEQRES 19 A 306 LEU ARG PRO VAL ILE HIS CYS ARG ALA GLY VAL GLY ARG SEQRES 20 A 306 THR ALA GLN LEU ILE GLY ALA MET CYS MET ASN ASP SER SEQRES 21 A 306 ARG ASN SER GLN LEU SER VAL GLU ASP MET VAL SER GLN SEQRES 22 A 306 MET ARG VAL GLN ARG ASN GLY ILE MET VAL GLN LYS ASP SEQRES 23 A 306 GLU GLN LEU ASP VAL LEU ILE LYS LEU ALA GLU GLY GLN SEQRES 24 A 306 GLY ARG PRO LEU LEU ASN SER SEQRES 1 B 306 PRO ARG GLU ARG PRO HIS THR SER GLY HIS HIS GLY ALA SEQRES 2 B 306 GLY GLU ALA ARG ALA THR ALA PRO SER THR VAL SER PRO SEQRES 3 B 306 TYR GLY PRO GLU ALA ARG ALA GLU LEU SER SER ARG LEU SEQRES 4 B 306 THR THR LEU ARG ASN THR LEU ALA PRO ALA THR ASN ASP SEQRES 5 B 306 PRO ARG TYR LEU GLN ALA CYS GLY GLY GLU LYS LEU ASN SEQRES 6 B 306 ARG PHE ARG ASP ILE GLN CYS ARG ARG GLN THR ALA VAL SEQRES 7 B 306 ARG ALA ASP LEU ASN ALA ASN TYR ILE GLN VAL GLY ASN SEQRES 8 B 306 THR ARG THR ILE ALA CYS GLN TYR PRO LEU GLN SER GLN SEQRES 9 B 306 LEU GLU SER HIS PHE ARG MET LEU ALA GLU ASN ARG THR SEQRES 10 B 306 PRO VAL LEU ALA VAL LEU ALA SER SER SER GLU ILE ALA SEQRES 11 B 306 ASN GLN ARG PHE GLY MET PRO ASP TYR PHE ARG GLN SER SEQRES 12 B 306 GLY THR TYR GLY SER ILE THR VAL GLU SER LYS MET THR SEQRES 13 B 306 GLN GLN VAL GLY LEU GLY ASP GLY ILE MET ALA ASP MET SEQRES 14 B 306 TYR THR LEU THR ILE ARG GLU ALA GLY GLN LYS THR ILE SEQRES 15 B 306 SER VAL PRO VAL VAL HIS VAL GLY ASN TRP PRO ASP PHE SEQRES 16 B 306 THR ALA VAL SER SER GLU VAL THR LYS ALA LEU ALA SER SEQRES 17 B 306 LEU VAL ASP GLN THR ALA GLU THR LYS ARG ASN MET TYR SEQRES 18 B 306 GLU SER LYS GLY SER SER ALA VAL ALA ASP ASP SER LYS SEQRES 19 B 306 LEU ARG PRO VAL ILE HIS CYS ARG ALA GLY VAL GLY ARG SEQRES 20 B 306 THR ALA GLN LEU ILE GLY ALA MET CYS MET ASN ASP SER SEQRES 21 B 306 ARG ASN SER GLN LEU SER VAL GLU ASP MET VAL SER GLN SEQRES 22 B 306 MET ARG VAL GLN ARG ASN GLY ILE MET VAL GLN LYS ASP SEQRES 23 B 306 GLU GLN LEU ASP VAL LEU ILE LYS LEU ALA GLU GLY GLN SEQRES 24 B 306 GLY ARG PRO LEU LEU ASN SER HET CSN A 1 15 HET SO4 A 469 5 HET CSN B 1 15 HET SO4 B 2 5 HETNAM CSN N,4-DIHYDROXY-N-OXO-3-(SULFOOXY)BENZENAMINIUM HETNAM SO4 SULFATE ION FORMUL 3 CSN 2(C6 H5 N O7 S) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *309(H2 O) HELIX 1 1 GLY A 190 ALA A 209 1 20 HELIX 2 2 ARG A 235 ALA A 239 5 5 HELIX 3 3 LEU A 263 SER A 265 5 3 HELIX 4 4 GLN A 266 ASN A 277 1 12 HELIX 5 5 SER A 287 ASN A 293 1 7 HELIX 6 6 GLN A 294 GLY A 297 5 4 HELIX 7 7 SER A 361 LYS A 386 1 26 HELIX 8 8 SER A 388 ASP A 393 5 6 HELIX 9 9 GLY A 408 ASP A 421 1 14 HELIX 10 10 SER A 422 SER A 425 5 4 HELIX 11 11 SER A 428 ARG A 440 1 13 HELIX 12 12 LYS A 447 GLN A 461 1 15 HELIX 13 13 GLY B 190 LEU B 208 1 19 HELIX 14 14 ARG B 235 ALA B 239 5 5 HELIX 15 15 LEU B 263 SER B 265 5 3 HELIX 16 16 GLN B 266 ASN B 277 1 12 HELIX 17 17 SER B 287 ASN B 293 1 7 HELIX 18 18 GLN B 294 GLY B 297 5 4 HELIX 19 19 SER B 361 LYS B 386 1 26 HELIX 20 20 SER B 388 ASP B 393 5 6 HELIX 21 21 GLY B 408 ASP B 421 1 14 HELIX 22 22 SER B 422 SER B 425 5 4 HELIX 23 23 SER B 428 ARG B 440 1 13 HELIX 24 24 LYS B 447 GLN B 461 1 15 SHEET 1 A 8 ALA A 246 VAL A 251 0 SHEET 2 A 8 THR A 254 CYS A 259 -1 O ALA A 258 N ASN A 247 SHEET 3 A 8 VAL A 400 HIS A 402 1 O ILE A 401 N ILE A 257 SHEET 4 A 8 LEU A 282 VAL A 284 1 N ALA A 283 O VAL A 400 SHEET 5 A 8 ILE A 344 VAL A 351 1 O VAL A 349 N LEU A 282 SHEET 6 A 8 ILE A 327 GLU A 338 -1 N ASP A 330 O HIS A 350 SHEET 7 A 8 ILE A 311 GLY A 324 -1 N THR A 312 O ARG A 337 SHEET 8 A 8 GLY A 306 TYR A 308 -1 N TYR A 308 O ILE A 311 SHEET 1 B 8 ALA B 246 VAL B 251 0 SHEET 2 B 8 THR B 254 CYS B 259 -1 O THR B 256 N ILE B 249 SHEET 3 B 8 VAL B 400 HIS B 402 1 O ILE B 401 N ILE B 257 SHEET 4 B 8 LEU B 282 VAL B 284 1 N ALA B 283 O VAL B 400 SHEET 5 B 8 ILE B 344 VAL B 351 1 O VAL B 349 N LEU B 282 SHEET 6 B 8 ILE B 327 ARG B 337 -1 N ASP B 330 O HIS B 350 SHEET 7 B 8 ILE B 311 GLY B 324 -1 N GLN B 319 O MET B 331 SHEET 8 B 8 GLY B 306 TYR B 308 -1 N TYR B 308 O ILE B 311 CISPEP 1 CYS A 221 GLY A 222 0 11.26 CISPEP 2 GLY A 222 GLY A 223 0 -21.92 CISPEP 3 GLY B 222 GLY B 223 0 7.91 SITE 1 AC1 11 PHE A 229 CYS A 403 ARG A 404 ALA A 405 SITE 2 AC1 11 GLY A 406 VAL A 407 GLY A 408 ARG A 409 SITE 3 AC1 11 GLN A 446 HOH A 481 HOH A 483 SITE 1 AC2 5 ARG A 278 LYS A 342 SER A 388 SER A 389 SITE 2 AC2 5 HOH A 513 SITE 1 AC3 14 PHE A 357 HOH B 72 PHE B 229 ILE B 232 SITE 2 AC3 14 ASP B 356 PHE B 357 CYS B 403 ARG B 404 SITE 3 AC3 14 ALA B 405 GLY B 406 VAL B 407 GLY B 408 SITE 4 AC3 14 ARG B 409 GLN B 446 SITE 1 AC4 5 ARG B 278 LYS B 342 SER B 388 SER B 389 SITE 2 AC4 5 ALA B 390 CRYST1 49.863 53.993 65.759 104.78 108.79 97.83 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020055 0.002757 0.008127 0.00000 SCALE2 0.000000 0.018695 0.006289 0.00000 SCALE3 0.000000 0.000000 0.016948 0.00000