HEADER TRANSFERASE 22-OCT-11 3UAY TITLE CRYSTAL STRUCTURE OF BACILLUS CEREUS ADENOSINE PHOSPHORYLASE D204N TITLE 2 MUTANT COMPLEXED WITH ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE DEOD-TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ADENOSINE PHOSPHORYLASE; COMPND 5 SYNONYM: PNP; COMPND 6 EC: 2.4.2.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 GENE: DEOD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET5B KEYWDS NECLEOSIDE PHOSPHORYLASE I (NP-I) FAMILY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.DESSANTI,Y.ZHANG,S.ALLEGRINI,M.G.TOZZI,F.SGARRELLA,S.E.EALICK REVDAT 4 13-SEP-23 3UAY 1 REMARK SEQADV REVDAT 3 08-NOV-17 3UAY 1 REMARK REVDAT 2 07-MAR-12 3UAY 1 JRNL REVDAT 1 29-FEB-12 3UAY 0 JRNL AUTH P.DESSANTI,Y.ZHANG,S.ALLEGRINI,M.G.TOZZI,F.SGARRELLA, JRNL AUTH 2 S.E.EALICK JRNL TITL STRUCTURAL BASIS OF THE SUBSTRATE SPECIFICITY OF BACILLUS JRNL TITL 2 CEREUS ADENOSINE PHOSPHORYLASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 239 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22349225 JRNL DOI 10.1107/S090744491200073X REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 57509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5134 - 3.7986 0.91 2772 160 0.1671 0.1815 REMARK 3 2 3.7986 - 3.0156 0.98 2854 151 0.1369 0.1449 REMARK 3 3 3.0156 - 2.6346 0.99 2842 138 0.1412 0.1411 REMARK 3 4 2.6346 - 2.3938 0.99 2825 138 0.1344 0.1532 REMARK 3 5 2.3938 - 2.2222 0.99 2785 154 0.1250 0.1371 REMARK 3 6 2.2222 - 2.0912 0.99 2813 134 0.1231 0.1644 REMARK 3 7 2.0912 - 1.9865 0.99 2783 133 0.1240 0.1509 REMARK 3 8 1.9865 - 1.9000 0.99 2777 134 0.1204 0.1322 REMARK 3 9 1.9000 - 1.8269 0.99 2761 142 0.1258 0.1406 REMARK 3 10 1.8269 - 1.7639 0.99 2757 138 0.1227 0.1357 REMARK 3 11 1.7639 - 1.7087 0.98 2736 147 0.1217 0.1303 REMARK 3 12 1.7087 - 1.6599 0.98 2734 146 0.1218 0.1190 REMARK 3 13 1.6599 - 1.6162 0.98 2716 148 0.1204 0.1288 REMARK 3 14 1.6162 - 1.5767 0.97 2709 141 0.1260 0.1396 REMARK 3 15 1.5767 - 1.5409 0.97 2717 131 0.1329 0.1461 REMARK 3 16 1.5409 - 1.5081 0.96 2644 145 0.1352 0.1509 REMARK 3 17 1.5081 - 1.4779 0.96 2640 147 0.1406 0.1600 REMARK 3 18 1.4779 - 1.4500 0.95 2620 147 0.1531 0.1709 REMARK 3 19 1.4500 - 1.4241 0.94 2603 150 0.1691 0.1965 REMARK 3 20 1.4241 - 1.4000 0.93 2570 127 0.1802 0.2253 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.53 REMARK 3 K_SOL : 0.48 REMARK 3 B_SOL : 62.14 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31350 REMARK 3 B22 (A**2) : 0.31350 REMARK 3 B33 (A**2) : -0.62690 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2039 REMARK 3 ANGLE : 1.299 2785 REMARK 3 CHIRALITY : 0.072 333 REMARK 3 PLANARITY : 0.006 358 REMARK 3 DIHEDRAL : 13.575 736 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 2:80) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2810 8.1556 58.4686 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.0806 REMARK 3 T33: 0.1026 T12: -0.0209 REMARK 3 T13: 0.0058 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.2496 L22: 0.4148 REMARK 3 L33: 0.3264 L12: -0.1816 REMARK 3 L13: 0.0054 L23: -0.1060 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: -0.0484 S13: -0.0644 REMARK 3 S21: 0.0086 S22: 0.0481 S23: 0.0989 REMARK 3 S31: 0.0281 S32: -0.0731 S33: 0.0138 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 81:102) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5382 8.6573 45.2074 REMARK 3 T TENSOR REMARK 3 T11: 0.1249 T22: 0.0955 REMARK 3 T33: 0.0931 T12: 0.0015 REMARK 3 T13: 0.0039 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.0917 L22: 0.2332 REMARK 3 L33: 0.0548 L12: -0.0406 REMARK 3 L13: 0.1000 L23: -0.0732 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: 0.0203 S13: -0.0783 REMARK 3 S21: -0.0961 S22: 0.0477 S23: 0.0004 REMARK 3 S31: 0.0940 S32: 0.0923 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 103:119) REMARK 3 ORIGIN FOR THE GROUP (A): 55.0729 18.7299 50.9274 REMARK 3 T TENSOR REMARK 3 T11: 0.0926 T22: 0.0759 REMARK 3 T33: 0.0983 T12: -0.0039 REMARK 3 T13: 0.0022 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.1012 L22: 0.0113 REMARK 3 L33: -0.0010 L12: -0.0329 REMARK 3 L13: 0.0537 L23: 0.0051 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: -0.0015 S13: 0.0306 REMARK 3 S21: -0.0237 S22: -0.0514 S23: -0.0587 REMARK 3 S31: -0.0059 S32: -0.0301 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 120:144) REMARK 3 ORIGIN FOR THE GROUP (A): 56.6894 6.4354 53.5199 REMARK 3 T TENSOR REMARK 3 T11: 0.1312 T22: 0.0706 REMARK 3 T33: 0.1104 T12: -0.0021 REMARK 3 T13: -0.0044 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.2515 L22: 0.0751 REMARK 3 L33: 0.1444 L12: -0.0361 REMARK 3 L13: -0.0952 L23: -0.0498 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.0424 S13: -0.0513 REMARK 3 S21: -0.0029 S22: 0.0587 S23: -0.0228 REMARK 3 S31: 0.0632 S32: 0.0211 S33: 0.0026 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 145:181) REMARK 3 ORIGIN FOR THE GROUP (A): 52.9425 17.5855 40.4453 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.0925 REMARK 3 T33: 0.0778 T12: 0.0178 REMARK 3 T13: 0.0038 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.1925 L22: 0.0864 REMARK 3 L33: 0.3478 L12: 0.0429 REMARK 3 L13: 0.0458 L23: -0.1707 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: 0.1112 S13: -0.0133 REMARK 3 S21: -0.0387 S22: -0.0569 S23: -0.0157 REMARK 3 S31: 0.0289 S32: -0.0110 S33: -0.0019 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 182:214) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3858 12.2183 47.1200 REMARK 3 T TENSOR REMARK 3 T11: 0.1063 T22: 0.0914 REMARK 3 T33: 0.0760 T12: -0.0067 REMARK 3 T13: -0.0075 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.4952 L22: 0.3635 REMARK 3 L33: 0.0843 L12: 0.1479 REMARK 3 L13: -0.0870 L23: -0.0553 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.0971 S13: -0.0480 REMARK 3 S21: -0.0637 S22: 0.0249 S23: 0.0472 REMARK 3 S31: -0.0082 S32: 0.0378 S33: 0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 215:234) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2151 -0.6852 48.4433 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.0985 REMARK 3 T33: 0.1257 T12: -0.0185 REMARK 3 T13: 0.0040 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.1952 L22: 0.1079 REMARK 3 L33: 0.0462 L12: -0.0220 REMARK 3 L13: -0.0465 L23: 0.0727 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.1973 S13: -0.1864 REMARK 3 S21: -0.1000 S22: -0.1703 S23: 0.0628 REMARK 3 S31: 0.0550 S32: 0.0579 S33: -0.0132 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58861 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1ECP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 - 1.25 M SODIUM CITRATE, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.10000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.10000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.10000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.10000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 34.10000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -274.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 122.20000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 61.10000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 105.82830 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 61.10000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 105.82830 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 102.30000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 122.20000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 102.30000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 102.30000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 441 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 442 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 444 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CD CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 83 CE NZ REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 GLU A 215 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 101 -2.93 81.39 REMARK 500 GLU A 181 -25.09 -142.52 REMARK 500 ILE A 233 -83.63 -86.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 239 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UAV RELATED DB: PDB REMARK 900 RELATED ID: 3UAW RELATED DB: PDB REMARK 900 RELATED ID: 3UAX RELATED DB: PDB REMARK 900 RELATED ID: 3UAZ RELATED DB: PDB DBREF 3UAY A 1 235 UNP Q5EEL8 DEOD_BACCE 1 235 SEQADV 3UAY ASN A 204 UNP Q5EEL8 ASP 204 ENGINEERED MUTATION SEQRES 1 A 235 MET SER VAL HIS ILE GLU ALA LYS GLN GLY GLU ILE ALA SEQRES 2 A 235 GLU SER ILE LEU LEU PRO GLY ASP PRO LEU ARG ALA LYS SEQRES 3 A 235 TYR ILE ALA GLU THR PHE LEU GLU ASP VAL THR CYS TYR SEQRES 4 A 235 ASN ASN VAL ARG GLY MET LEU GLY PHE THR GLY THR TYR SEQRES 5 A 235 LYS GLY LYS ARG VAL SER VAL GLN GLY THR GLY MET GLY SEQRES 6 A 235 VAL PRO SER ILE SER ILE TYR VAL ASN GLU LEU ILE GLN SEQRES 7 A 235 SER TYR GLY VAL LYS ASN LEU ILE ARG VAL GLY THR CYS SEQRES 8 A 235 GLY ALA ILE GLN LYS ASP VAL LYS VAL ARG ASP VAL ILE SEQRES 9 A 235 ILE ALA MET THR ALA CYS THR ASP SER ASN MET ASN ARG SEQRES 10 A 235 LEU THR PHE PRO GLY PHE ASP PHE ALA PRO ALA ALA ASN SEQRES 11 A 235 PHE ASP LEU LEU LYS LYS ALA TYR ASP ALA GLY THR GLU SEQRES 12 A 235 LYS GLY LEU HIS VAL ARG VAL GLY ASN VAL LEU THR ALA SEQRES 13 A 235 ASP VAL PHE TYR ARG GLU SER MET ASP MET VAL LYS LYS SEQRES 14 A 235 LEU GLY ASP TYR GLY VAL LEU ALA VAL GLU MET GLU THR SEQRES 15 A 235 THR ALA LEU TYR THR LEU ALA ALA LYS TYR GLY VAL ASN SEQRES 16 A 235 ALA LEU SER VAL LEU THR VAL SER ASN HIS ILE PHE THR SEQRES 17 A 235 GLY GLU GLU THR THR SER GLU GLU ARG GLN THR THR PHE SEQRES 18 A 235 ASN GLU MET ILE GLU ILE ALA LEU ASP ALA ALA ILE GLN SEQRES 19 A 235 GLN HET ADN A 236 19 HET SO4 A 237 5 HET GOL A 238 6 HET GOL A 239 6 HETNAM ADN ADENOSINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ADN C10 H13 N5 O4 FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *207(H2 O) HELIX 1 1 ASP A 21 LEU A 33 1 13 HELIX 2 2 ASN A 41 MET A 45 5 5 HELIX 3 3 GLY A 65 GLY A 81 1 17 HELIX 4 4 ASN A 114 PHE A 120 1 7 HELIX 5 5 ASN A 130 GLY A 145 1 16 HELIX 6 6 MET A 164 TYR A 173 1 10 HELIX 7 7 GLU A 181 GLY A 193 1 13 HELIX 8 8 SER A 214 GLU A 216 5 3 HELIX 9 9 ARG A 217 ILE A 233 1 17 SHEET 1 A10 GLU A 34 ASN A 40 0 SHEET 2 A10 GLY A 47 TYR A 52 -1 O THR A 49 N THR A 37 SHEET 3 A10 LYS A 55 GLN A 60 -1 O VAL A 59 N PHE A 48 SHEET 4 A10 SER A 15 LEU A 18 1 N LEU A 17 O GLN A 60 SHEET 5 A10 ASN A 84 ALA A 93 1 O ILE A 86 N ILE A 16 SHEET 6 A10 ASN A 195 HIS A 205 1 O VAL A 199 N ARG A 87 SHEET 7 A10 VAL A 103 THR A 111 -1 N ILE A 104 O LEU A 200 SHEET 8 A10 VAL A 148 THR A 155 1 O THR A 155 N CYS A 110 SHEET 9 A10 ALA A 177 GLU A 179 1 O GLU A 179 N LEU A 154 SHEET 10 A10 ASN A 84 ALA A 93 -1 N GLY A 92 O VAL A 178 SITE 1 AC1 17 HIS A 4 ARG A 43 MET A 64 ARG A 87 SITE 2 AC1 17 THR A 90 CYS A 91 GLY A 92 PHE A 159 SITE 3 AC1 17 VAL A 178 GLU A 179 MET A 180 GLU A 181 SITE 4 AC1 17 ASN A 204 ILE A 206 SO4 A 237 HOH A 278 SITE 5 AC1 17 HOH A 392 SITE 1 AC2 8 GLY A 20 ARG A 43 ARG A 87 GLY A 89 SITE 2 AC2 8 THR A 90 ADN A 236 HOH A 268 HOH A 277 SITE 1 AC3 8 TYR A 160 ARG A 161 GLU A 162 TYR A 173 SITE 2 AC3 8 LYS A 191 HOH A 251 HOH A 395 HOH A 432 SITE 1 AC4 4 GLU A 75 GLN A 78 SER A 79 HOH A 258 CRYST1 122.200 122.200 68.200 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008183 0.004725 0.000000 0.00000 SCALE2 0.000000 0.009449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014663 0.00000