HEADER REPLICATION 22-OCT-11 3UB0 TITLE CRYSTAL STRUCTURE OF THE NONSTRUCTURAL PROTEIN 7 AND 8 COMPLEX OF TITLE 2 FELINE CORONAVIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 6, NSP6,; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 3583-3777; COMPND 5 SYNONYM: REPLICASE POLYPROTEIN 1AB; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NON-STRUCTURAL PROTEIN 7, NSP7; COMPND 9 CHAIN: B, C, E, F; COMPND 10 FRAGMENT: UNP RESIDUES 3500-3582; COMPND 11 SYNONYM: REPLICASE POLYPROTEIN 1AB; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FELINE INFECTIOUS PERITONITIS VIRUS; SOURCE 3 ORGANISM_COMMON: FCOV; SOURCE 4 ORGANISM_TAXID: 33734; SOURCE 5 STRAIN: FIPV WSU-79/1146; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: FELINE INFECTIOUS PERITONITIS VIRUS; SOURCE 11 ORGANISM_COMMON: FCOV; SOURCE 12 ORGANISM_TAXID: 33734; SOURCE 13 STRAIN: FIPV WSU-79/1146; SOURCE 14 GENE: REP, 1A-1B; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FELINE CORONAVIRUS, NONSTRUCTURAL PROTEIN, PRIMER-INDEPENDENT RNA KEYWDS 2 POLYMERASE, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.XIAO,R.HILGENFELD,Q.MA REVDAT 4 30-OCT-24 3UB0 1 SEQADV LINK REVDAT 3 08-NOV-17 3UB0 1 REMARK REVDAT 2 17-OCT-12 3UB0 1 JRNL REVDAT 1 22-FEB-12 3UB0 0 JRNL AUTH Y.XIAO,Q.MA,T.RESTLE,W.SHANG,D.I.SVERGUN,R.PONNUSAMY, JRNL AUTH 2 G.SCZAKIEL,R.HILGENFELD JRNL TITL NONSTRUCTURAL PROTEINS 7 AND 8 OF FELINE CORONAVIRUS FORM A JRNL TITL 2 2:1 HETEROTRIMER THAT EXHIBITS PRIMER-INDEPENDENT RNA JRNL TITL 3 POLYMERASE ACTIVITY. JRNL REF J.VIROL. V. 86 4444 2012 JRNL REFN ISSN 0022-538X JRNL PMID 22318142 JRNL DOI 10.1128/JVI.06635-11 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 1471 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2831 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2478 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2831 REMARK 3 BIN R VALUE (WORKING SET) : 0.2478 REMARK 3 BIN FREE R VALUE : 0.0000 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 0.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 0 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5498 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.06700 REMARK 3 B22 (A**2) : 0.24690 REMARK 3 B33 (A**2) : -9.31390 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.454 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.422 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5579 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7546 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1992 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 151 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 775 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5579 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 761 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6220 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.29 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.67 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.82 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|-2 - A|72 } REMARK 3 ORIGIN FOR THE GROUP (A): 78.7439 50.9333 49.9213 REMARK 3 T TENSOR REMARK 3 T11: 0.2306 T22: 0.3746 REMARK 3 T33: 0.2592 T12: -0.1139 REMARK 3 T13: 0.0067 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 5.3060 L22: 6.2967 REMARK 3 L33: 1.5270 L12: 4.8480 REMARK 3 L13: -2.1334 L23: -2.5868 REMARK 3 S TENSOR REMARK 3 S11: 0.3603 S12: -0.3199 S13: -0.2810 REMARK 3 S21: 0.6981 S22: -0.3268 S23: 0.1458 REMARK 3 S31: -0.1352 S32: -0.2017 S33: -0.0335 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|73 - A|192 } REMARK 3 ORIGIN FOR THE GROUP (A): 40.9895 2.5922 34.8954 REMARK 3 T TENSOR REMARK 3 T11: 0.1890 T22: 0.4545 REMARK 3 T33: 0.1709 T12: -0.0702 REMARK 3 T13: 0.0742 T23: 0.0978 REMARK 3 L TENSOR REMARK 3 L11: 1.5376 L22: 4.6429 REMARK 3 L33: 1.8180 L12: 0.1430 REMARK 3 L13: 0.3591 L23: 1.5469 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.3895 S13: 0.0694 REMARK 3 S21: -0.3959 S22: 0.0815 S23: -0.1316 REMARK 3 S31: -0.1061 S32: 0.1028 S33: -0.0353 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|2 - B|83 } REMARK 3 ORIGIN FOR THE GROUP (A): 53.4451 33.9469 46.8950 REMARK 3 T TENSOR REMARK 3 T11: 0.1903 T22: 0.2305 REMARK 3 T33: 0.4199 T12: -0.0966 REMARK 3 T13: 0.0123 T23: 0.1471 REMARK 3 L TENSOR REMARK 3 L11: 5.4695 L22: 4.1886 REMARK 3 L33: 1.4109 L12: 2.9297 REMARK 3 L13: -0.8685 L23: -0.1662 REMARK 3 S TENSOR REMARK 3 S11: 0.0755 S12: 0.1693 S13: 0.3935 REMARK 3 S21: -0.0939 S22: 0.0363 S23: -0.2223 REMARK 3 S31: -0.3420 S32: -0.0109 S33: -0.1118 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { C|1 - C|81 } REMARK 3 ORIGIN FOR THE GROUP (A): 45.2766 15.8592 39.9273 REMARK 3 T TENSOR REMARK 3 T11: 0.0376 T22: 0.1362 REMARK 3 T33: 0.0851 T12: -0.0395 REMARK 3 T13: 0.0306 T23: 0.0704 REMARK 3 L TENSOR REMARK 3 L11: 4.0761 L22: 4.5077 REMARK 3 L33: 4.6767 L12: 2.0840 REMARK 3 L13: 0.1493 L23: 1.3786 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: 0.1221 S13: -0.0848 REMARK 3 S21: -0.1734 S22: 0.1159 S23: -0.4346 REMARK 3 S31: -0.1388 S32: 0.0536 S33: -0.1284 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { D|-2 - D|138 } REMARK 3 ORIGIN FOR THE GROUP (A): 77.7065 41.4159 38.1459 REMARK 3 T TENSOR REMARK 3 T11: 0.1899 T22: 0.4288 REMARK 3 T33: 0.3971 T12: 0.0011 REMARK 3 T13: 0.0418 T23: -0.0720 REMARK 3 L TENSOR REMARK 3 L11: 2.6491 L22: 1.8286 REMARK 3 L33: 1.7732 L12: 1.5221 REMARK 3 L13: -0.7285 L23: -0.7816 REMARK 3 S TENSOR REMARK 3 S11: -0.1771 S12: 0.3740 S13: -0.9136 REMARK 3 S21: -0.2098 S22: 0.0587 S23: -0.4465 REMARK 3 S31: 0.2841 S32: -0.3590 S33: 0.1184 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { D|139 - D|191 } REMARK 3 ORIGIN FOR THE GROUP (A): 73.2861 79.4041 11.4992 REMARK 3 T TENSOR REMARK 3 T11: 0.3358 T22: 0.9781 REMARK 3 T33: -0.2838 T12: 0.4563 REMARK 3 T13: -0.2335 T23: 0.5980 REMARK 3 L TENSOR REMARK 3 L11: 2.1994 L22: 8.2928 REMARK 3 L33: 3.5768 L12: -1.6395 REMARK 3 L13: -0.2549 L23: 4.0632 REMARK 3 S TENSOR REMARK 3 S11: -0.4543 S12: 1.0863 S13: 0.9580 REMARK 3 S21: -1.0965 S22: 0.9231 S23: 0.5242 REMARK 3 S31: -2.2596 S32: -1.8311 S33: -0.4688 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { E|2 - E|82 } REMARK 3 ORIGIN FOR THE GROUP (A): 83.6636 39.3770 31.6312 REMARK 3 T TENSOR REMARK 3 T11: 0.3492 T22: 0.5230 REMARK 3 T33: 0.6169 T12: -0.1501 REMARK 3 T13: 0.2562 T23: -0.3768 REMARK 3 L TENSOR REMARK 3 L11: 3.2133 L22: 5.4844 REMARK 3 L33: 4.7967 L12: 2.4062 REMARK 3 L13: -1.6033 L23: -2.6874 REMARK 3 S TENSOR REMARK 3 S11: -0.5733 S12: 0.8579 S13: -1.3035 REMARK 3 S21: -0.7944 S22: 0.0304 S23: -0.6708 REMARK 3 S31: 0.8673 S32: 0.0286 S33: 0.5430 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { F|1 - F|77 } REMARK 3 ORIGIN FOR THE GROUP (A): 81.1146 57.8130 21.3022 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.9241 REMARK 3 T33: -0.0081 T12: -0.1019 REMARK 3 T13: -0.0293 T23: -0.0779 REMARK 3 L TENSOR REMARK 3 L11: 8.2711 L22: 3.0960 REMARK 3 L33: 3.6952 L12: 1.3334 REMARK 3 L13: -1.1533 L23: -0.2996 REMARK 3 S TENSOR REMARK 3 S11: -0.2819 S12: 1.7383 S13: -0.1296 REMARK 3 S21: -0.4952 S22: 0.2625 S23: -0.0105 REMARK 3 S31: -0.0923 S32: -0.7919 S33: 0.0194 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068528. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9809 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31155 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 33.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.230 REMARK 200 R MERGE (I) : 0.05770 REMARK 200 R SYM (I) : 0.05770 REMARK 200 FOR THE DATA SET : 20.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.41 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : 0.62000 REMARK 200 FOR SHELL : 3.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.24M (NH4)2HPO4, 2MM TCEP, 0.1M TRIS REMARK 280 -HCL, PH 8.7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.33000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.33000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.72700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.15050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.72700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.15050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.33000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.72700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.15050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.33000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.72700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 80.15050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A 74 REMARK 465 ARG A 75 REMARK 465 ALA A 76 REMARK 465 VAL A 77 REMARK 465 ASP A 78 REMARK 465 LYS A 193 REMARK 465 LEU A 194 REMARK 465 GLN A 195 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 LEU B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 LEU C -1 REMARK 465 LEU C 82 REMARK 465 GLN C 83 REMARK 465 GLY D -3 REMARK 465 THR D 192 REMARK 465 LYS D 193 REMARK 465 LEU D 194 REMARK 465 GLN D 195 REMARK 465 GLY E -3 REMARK 465 PRO E -2 REMARK 465 LEU E -1 REMARK 465 GLY E 0 REMARK 465 SER E 1 REMARK 465 GLN E 83 REMARK 465 GLY F -3 REMARK 465 PRO F -2 REMARK 465 LEU F -1 REMARK 465 ASN F 78 REMARK 465 THR F 79 REMARK 465 THR F 80 REMARK 465 ILE F 81 REMARK 465 LEU F 82 REMARK 465 GLN F 83 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER D 124 C - N - CA ANGL. DEV. = 17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 71 -30.35 -37.98 REMARK 500 PRO A 121 -142.83 -75.40 REMARK 500 ALA A 122 -136.40 45.69 REMARK 500 ALA A 123 9.44 48.34 REMARK 500 SER A 124 2.54 57.59 REMARK 500 GLU A 144 -115.12 69.80 REMARK 500 THR A 191 73.36 -64.54 REMARK 500 LYS C 2 30.94 -85.11 REMARK 500 PHE C 76 -60.67 -104.63 REMARK 500 ALA D 122 107.12 -32.09 REMARK 500 SER D 124 -178.34 70.76 REMARK 500 GLN D 143 74.11 -109.08 REMARK 500 GLU D 144 -72.53 57.16 REMARK 500 THR E 9 118.94 -36.97 REMARK 500 LYS F 2 59.85 -93.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 3UB0 A 1 195 UNP Q98VG9 R1AB_FIPV 3583 3777 DBREF 3UB0 B 1 83 UNP Q98VG9 R1AB_FIPV 3500 3582 DBREF 3UB0 C 1 83 UNP Q98VG9 R1AB_FIPV 3500 3582 DBREF 3UB0 D 1 195 UNP Q98VG9 R1AB_FIPV 3583 3777 DBREF 3UB0 E 1 83 UNP Q98VG9 R1AB_FIPV 3500 3582 DBREF 3UB0 F 1 83 UNP Q98VG9 R1AB_FIPV 3500 3582 SEQADV 3UB0 GLY A -3 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 PRO A -2 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 LEU A -1 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 GLY A 0 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 GLY B -3 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 PRO B -2 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 LEU B -1 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 GLY B 0 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 GLY C -3 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 PRO C -2 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 LEU C -1 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 GLY C 0 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 GLY D -3 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 PRO D -2 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 LEU D -1 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 GLY D 0 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 GLY E -3 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 PRO E -2 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 LEU E -1 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 GLY E 0 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 GLY F -3 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 PRO F -2 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 LEU F -1 UNP Q98VG9 EXPRESSION TAG SEQADV 3UB0 GLY F 0 UNP Q98VG9 EXPRESSION TAG SEQRES 1 A 199 GLY PRO LEU GLY SER VAL ALA SER ALA TYR ALA ALA LEU SEQRES 2 A 199 PRO SER TRP ILE ALA TYR GLU LYS ALA ARG ALA ASP LEU SEQRES 3 A 199 GLU GLU ALA LYS LYS ASN ASP VAL SER PRO GLN LEU LEU SEQRES 4 A 199 LYS GLN LEU THR LYS ALA CYS ASN ILE ALA LYS SER GLU SEQRES 5 A 199 PHE GLU ARG GLU ALA SER VAL GLN LYS LYS LEU ASP LYS SEQRES 6 A 199 MSE ALA GLU GLN ALA ALA ALA SER MSE TYR LYS GLU ALA SEQRES 7 A 199 ARG ALA VAL ASP ARG LYS SER LYS ILE VAL SER ALA MSE SEQRES 8 A 199 HIS SER LEU LEU PHE GLY MSE LEU LYS LYS LEU ASP MSE SEQRES 9 A 199 SER SER VAL ASN THR ILE ILE GLU GLN ALA ARG ASN GLY SEQRES 10 A 199 VAL LEU PRO LEU SER ILE ILE PRO ALA ALA SER ALA THR SEQRES 11 A 199 ARG LEU ILE VAL VAL THR PRO ASN LEU GLU VAL LEU SER SEQRES 12 A 199 LYS VAL ARG GLN GLU ASN ASN VAL HIS TYR ALA GLY ALA SEQRES 13 A 199 ILE TRP SER ILE VAL GLU VAL LYS ASP ALA ASN GLY ALA SEQRES 14 A 199 GLN VAL HIS LEU LYS GLU VAL THR ALA ALA ASN GLU LEU SEQRES 15 A 199 ASN ILE THR TRP PRO LEU SER ILE THR CYS GLU ARG THR SEQRES 16 A 199 THR LYS LEU GLN SEQRES 1 B 87 GLY PRO LEU GLY SER LYS LEU THR GLU MET LYS CYS THR SEQRES 2 B 87 ASN VAL VAL LEU LEU GLY LEU LEU SER LYS MET HIS VAL SEQRES 3 B 87 GLU SER ASN SER LYS GLU TRP ASN TYR CYS VAL GLY LEU SEQRES 4 B 87 HIS ASN GLU ILE ASN LEU CYS ASP ASP PRO ASP ALA VAL SEQRES 5 B 87 LEU GLU LYS LEU LEU ALA LEU ILE ALA PHE PHE LEU SER SEQRES 6 B 87 LYS HIS ASN THR CYS ASP LEU SER ASP LEU ILE GLU SER SEQRES 7 B 87 TYR PHE GLU ASN THR THR ILE LEU GLN SEQRES 1 C 87 GLY PRO LEU GLY SER LYS LEU THR GLU MET LYS CYS THR SEQRES 2 C 87 ASN VAL VAL LEU LEU GLY LEU LEU SER LYS MET HIS VAL SEQRES 3 C 87 GLU SER ASN SER LYS GLU TRP ASN TYR CYS VAL GLY LEU SEQRES 4 C 87 HIS ASN GLU ILE ASN LEU CYS ASP ASP PRO ASP ALA VAL SEQRES 5 C 87 LEU GLU LYS LEU LEU ALA LEU ILE ALA PHE PHE LEU SER SEQRES 6 C 87 LYS HIS ASN THR CYS ASP LEU SER ASP LEU ILE GLU SER SEQRES 7 C 87 TYR PHE GLU ASN THR THR ILE LEU GLN SEQRES 1 D 199 GLY PRO LEU GLY SER VAL ALA SER ALA TYR ALA ALA LEU SEQRES 2 D 199 PRO SER TRP ILE ALA TYR GLU LYS ALA ARG ALA ASP LEU SEQRES 3 D 199 GLU GLU ALA LYS LYS ASN ASP VAL SER PRO GLN LEU LEU SEQRES 4 D 199 LYS GLN LEU THR LYS ALA CYS ASN ILE ALA LYS SER GLU SEQRES 5 D 199 PHE GLU ARG GLU ALA SER VAL GLN LYS LYS LEU ASP LYS SEQRES 6 D 199 MSE ALA GLU GLN ALA ALA ALA SER MSE TYR LYS GLU ALA SEQRES 7 D 199 ARG ALA VAL ASP ARG LYS SER LYS ILE VAL SER ALA MSE SEQRES 8 D 199 HIS SER LEU LEU PHE GLY MSE LEU LYS LYS LEU ASP MSE SEQRES 9 D 199 SER SER VAL ASN THR ILE ILE GLU GLN ALA ARG ASN GLY SEQRES 10 D 199 VAL LEU PRO LEU SER ILE ILE PRO ALA ALA SER ALA THR SEQRES 11 D 199 ARG LEU ILE VAL VAL THR PRO ASN LEU GLU VAL LEU SER SEQRES 12 D 199 LYS VAL ARG GLN GLU ASN ASN VAL HIS TYR ALA GLY ALA SEQRES 13 D 199 ILE TRP SER ILE VAL GLU VAL LYS ASP ALA ASN GLY ALA SEQRES 14 D 199 GLN VAL HIS LEU LYS GLU VAL THR ALA ALA ASN GLU LEU SEQRES 15 D 199 ASN ILE THR TRP PRO LEU SER ILE THR CYS GLU ARG THR SEQRES 16 D 199 THR LYS LEU GLN SEQRES 1 E 87 GLY PRO LEU GLY SER LYS LEU THR GLU MET LYS CYS THR SEQRES 2 E 87 ASN VAL VAL LEU LEU GLY LEU LEU SER LYS MET HIS VAL SEQRES 3 E 87 GLU SER ASN SER LYS GLU TRP ASN TYR CYS VAL GLY LEU SEQRES 4 E 87 HIS ASN GLU ILE ASN LEU CYS ASP ASP PRO ASP ALA VAL SEQRES 5 E 87 LEU GLU LYS LEU LEU ALA LEU ILE ALA PHE PHE LEU SER SEQRES 6 E 87 LYS HIS ASN THR CYS ASP LEU SER ASP LEU ILE GLU SER SEQRES 7 E 87 TYR PHE GLU ASN THR THR ILE LEU GLN SEQRES 1 F 87 GLY PRO LEU GLY SER LYS LEU THR GLU MET LYS CYS THR SEQRES 2 F 87 ASN VAL VAL LEU LEU GLY LEU LEU SER LYS MET HIS VAL SEQRES 3 F 87 GLU SER ASN SER LYS GLU TRP ASN TYR CYS VAL GLY LEU SEQRES 4 F 87 HIS ASN GLU ILE ASN LEU CYS ASP ASP PRO ASP ALA VAL SEQRES 5 F 87 LEU GLU LYS LEU LEU ALA LEU ILE ALA PHE PHE LEU SER SEQRES 6 F 87 LYS HIS ASN THR CYS ASP LEU SER ASP LEU ILE GLU SER SEQRES 7 F 87 TYR PHE GLU ASN THR THR ILE LEU GLN MODRES 3UB0 MSE A 62 MET SELENOMETHIONINE MODRES 3UB0 MSE A 70 MET SELENOMETHIONINE MODRES 3UB0 MSE A 87 MET SELENOMETHIONINE MODRES 3UB0 MSE A 94 MET SELENOMETHIONINE MODRES 3UB0 MSE A 100 MET SELENOMETHIONINE MODRES 3UB0 MSE D 62 MET SELENOMETHIONINE MODRES 3UB0 MSE D 70 MET SELENOMETHIONINE MODRES 3UB0 MSE D 87 MET SELENOMETHIONINE MODRES 3UB0 MSE D 94 MET SELENOMETHIONINE MODRES 3UB0 MSE D 100 MET SELENOMETHIONINE HET MSE A 62 8 HET MSE A 70 8 HET MSE A 87 8 HET MSE A 94 8 HET MSE A 100 8 HET MSE D 62 8 HET MSE D 70 8 HET MSE D 87 8 HET MSE D 94 8 HET MSE D 100 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 7 HOH *77(H2 O) HELIX 1 1 SER A 4 ASN A 28 1 25 HELIX 2 2 SER A 31 TYR A 71 1 41 HELIX 3 3 LYS A 80 ASP A 99 1 20 HELIX 4 4 MSE A 100 ASN A 112 1 13 HELIX 5 5 ASN A 134 VAL A 141 1 8 HELIX 6 6 HIS A 168 VAL A 172 5 5 HELIX 7 7 THR A 173 ILE A 180 5 8 HELIX 8 8 ASN B 10 MET B 20 1 11 HELIX 9 9 HIS B 21 SER B 24 5 4 HELIX 10 10 ASN B 25 CYS B 42 1 18 HELIX 11 11 ASP B 44 HIS B 63 1 20 HELIX 12 12 LEU B 68 THR B 79 1 12 HELIX 13 13 THR B 80 GLN B 83 5 4 HELIX 14 14 LYS C 2 MET C 20 1 19 HELIX 15 15 HIS C 21 SER C 24 5 4 HELIX 16 16 ASN C 25 CYS C 42 1 18 HELIX 17 17 ASP C 44 LYS C 62 1 19 HELIX 18 18 ASN C 64 PHE C 76 1 13 HELIX 19 19 SER D 4 ASP D 29 1 26 HELIX 20 20 SER D 31 SER D 69 1 39 HELIX 21 21 SER D 69 VAL D 77 1 9 HELIX 22 22 ARG D 79 ASP D 99 1 21 HELIX 23 23 MSE D 100 ASN D 112 1 13 HELIX 24 24 ASN D 134 VAL D 141 1 8 HELIX 25 25 THR D 173 ILE D 180 5 8 HELIX 26 26 ASN E 10 MET E 20 1 11 HELIX 27 27 HIS E 21 SER E 24 5 4 HELIX 28 28 ASN E 25 CYS E 42 1 18 HELIX 29 29 ASP E 44 HIS E 63 1 20 HELIX 30 30 LEU E 68 THR E 79 1 12 HELIX 31 31 LYS F 2 MET F 20 1 19 HELIX 32 32 HIS F 21 SER F 24 5 4 HELIX 33 33 ASN F 25 CYS F 42 1 18 HELIX 34 34 ASP F 44 LYS F 62 1 19 HELIX 35 35 ASN F 64 PHE F 76 1 13 SHEET 1 A 6 LEU A 115 ILE A 120 0 SHEET 2 A 6 ARG A 127 THR A 132 -1 O ILE A 129 N LEU A 117 SHEET 3 A 6 LEU A 184 ARG A 190 -1 O ILE A 186 N VAL A 130 SHEET 4 A 6 ALA A 152 LYS A 160 -1 N VAL A 157 O THR A 187 SHEET 5 A 6 ASN A 146 TYR A 149 -1 N VAL A 147 O TRP A 154 SHEET 6 A 6 ARG A 142 GLN A 143 -1 N GLN A 143 O ASN A 146 SHEET 1 B 6 LEU D 115 ILE D 120 0 SHEET 2 B 6 ARG D 127 THR D 132 -1 O ILE D 129 N LEU D 117 SHEET 3 B 6 LEU D 184 ARG D 190 -1 O CYS D 188 N LEU D 128 SHEET 4 B 6 ALA D 152 LYS D 160 -1 N VAL D 157 O THR D 187 SHEET 5 B 6 ASN D 146 TYR D 149 -1 N VAL D 147 O TRP D 154 SHEET 6 B 6 ARG D 142 GLN D 143 -1 N GLN D 143 O ASN D 146 LINK C LYS A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N ALA A 63 1555 1555 1.34 LINK C SER A 69 N MSE A 70 1555 1555 1.36 LINK C MSE A 70 N TYR A 71 1555 1555 1.35 LINK C ALA A 86 N MSE A 87 1555 1555 1.35 LINK C MSE A 87 N HIS A 88 1555 1555 1.36 LINK C GLY A 93 N MSE A 94 1555 1555 1.35 LINK C MSE A 94 N LEU A 95 1555 1555 1.34 LINK C ASP A 99 N MSE A 100 1555 1555 1.34 LINK C MSE A 100 N SER A 101 1555 1555 1.33 LINK C LYS D 61 N MSE D 62 1555 1555 1.33 LINK C MSE D 62 N ALA D 63 1555 1555 1.35 LINK C SER D 69 N MSE D 70 1555 1555 1.34 LINK C MSE D 70 N TYR D 71 1555 1555 1.36 LINK C ALA D 86 N MSE D 87 1555 1555 1.35 LINK C MSE D 87 N HIS D 88 1555 1555 1.36 LINK C GLY D 93 N MSE D 94 1555 1555 1.35 LINK C MSE D 94 N LEU D 95 1555 1555 1.34 LINK C ASP D 99 N MSE D 100 1555 1555 1.34 LINK C MSE D 100 N SER D 101 1555 1555 1.33 CISPEP 1 TRP A 182 PRO A 183 0 -0.70 CISPEP 2 ALA D 123 SER D 124 0 -4.28 CISPEP 3 TRP D 182 PRO D 183 0 -0.40 CRYST1 121.454 160.301 102.660 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008234 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006238 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009741 0.00000