data_3UBB # _entry.id 3UBB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3UBB RCSB RCSB068539 WWPDB D_1000068539 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UBB _pdbx_database_status.recvd_initial_deposition_date 2011-10-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xue, Y.' 1 'Ha, Y.' 2 # _citation.id primary _citation.title ;Conformational Change in Rhomboid Protease GlpG Induced by Inhibitor Binding to Its S' Subsites. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 51 _citation.page_first 3723 _citation.page_last 3731 _citation.year 2012 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22515733 _citation.pdbx_database_id_DOI 10.1021/bi300368b # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xue, Y.' 1 ? primary 'Chowdhury, S.' 2 ? primary 'Liu, X.' 3 ? primary 'Akiyama, Y.' 4 ? primary 'Ellman, J.' 5 ? primary 'Ha, Y.' 6 ? # _cell.entry_id 3UBB _cell.length_a 111.722 _cell.length_b 111.722 _cell.length_c 121.810 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UBB _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Rhomboid protease glpG' 20528.312 1 3.4.21.105 ? 'UNP residues 91-272' ? 2 non-polymer syn 'propan-2-yl hydrogen (S)-[(1R)-1-{[(benzyloxy)carbonyl]amino}ethyl]phosphonate' 301.275 1 ? ? ? ? 3 water nat water 18.015 30 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Intramembrane serine protease' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLG SGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMA NGAHIAGLAVGLAMAFVDSLNA ; _entity_poly.pdbx_seq_one_letter_code_can ;ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLG SGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMA NGAHIAGLAVGLAMAFVDSLNA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ARG n 1 3 ALA n 1 4 GLY n 1 5 PRO n 1 6 VAL n 1 7 THR n 1 8 TRP n 1 9 VAL n 1 10 MET n 1 11 MET n 1 12 ILE n 1 13 ALA n 1 14 CYS n 1 15 VAL n 1 16 VAL n 1 17 VAL n 1 18 PHE n 1 19 ILE n 1 20 ALA n 1 21 MET n 1 22 GLN n 1 23 ILE n 1 24 LEU n 1 25 GLY n 1 26 ASP n 1 27 GLN n 1 28 GLU n 1 29 VAL n 1 30 MET n 1 31 LEU n 1 32 TRP n 1 33 LEU n 1 34 ALA n 1 35 TRP n 1 36 PRO n 1 37 PHE n 1 38 ASP n 1 39 PRO n 1 40 THR n 1 41 LEU n 1 42 LYS n 1 43 PHE n 1 44 GLU n 1 45 PHE n 1 46 TRP n 1 47 ARG n 1 48 TYR n 1 49 PHE n 1 50 THR n 1 51 HIS n 1 52 ALA n 1 53 LEU n 1 54 MET n 1 55 HIS n 1 56 PHE n 1 57 SER n 1 58 LEU n 1 59 MET n 1 60 HIS n 1 61 ILE n 1 62 LEU n 1 63 PHE n 1 64 ASN n 1 65 LEU n 1 66 LEU n 1 67 TRP n 1 68 TRP n 1 69 TRP n 1 70 TYR n 1 71 LEU n 1 72 GLY n 1 73 GLY n 1 74 ALA n 1 75 VAL n 1 76 GLU n 1 77 LYS n 1 78 ARG n 1 79 LEU n 1 80 GLY n 1 81 SER n 1 82 GLY n 1 83 LYS n 1 84 LEU n 1 85 ILE n 1 86 VAL n 1 87 ILE n 1 88 THR n 1 89 LEU n 1 90 ILE n 1 91 SER n 1 92 ALA n 1 93 LEU n 1 94 LEU n 1 95 SER n 1 96 GLY n 1 97 TYR n 1 98 VAL n 1 99 GLN n 1 100 GLN n 1 101 LYS n 1 102 PHE n 1 103 SER n 1 104 GLY n 1 105 PRO n 1 106 TRP n 1 107 PHE n 1 108 GLY n 1 109 GLY n 1 110 LEU n 1 111 SER n 1 112 GLY n 1 113 VAL n 1 114 VAL n 1 115 TYR n 1 116 ALA n 1 117 LEU n 1 118 MET n 1 119 GLY n 1 120 TYR n 1 121 VAL n 1 122 TRP n 1 123 LEU n 1 124 ARG n 1 125 GLY n 1 126 GLU n 1 127 ARG n 1 128 ASP n 1 129 PRO n 1 130 GLN n 1 131 SER n 1 132 GLY n 1 133 ILE n 1 134 TYR n 1 135 LEU n 1 136 GLN n 1 137 ARG n 1 138 GLY n 1 139 LEU n 1 140 ILE n 1 141 ILE n 1 142 PHE n 1 143 ALA n 1 144 LEU n 1 145 ILE n 1 146 TRP n 1 147 ILE n 1 148 VAL n 1 149 ALA n 1 150 GLY n 1 151 TRP n 1 152 PHE n 1 153 ASP n 1 154 LEU n 1 155 PHE n 1 156 GLY n 1 157 MET n 1 158 SER n 1 159 MET n 1 160 ALA n 1 161 ASN n 1 162 GLY n 1 163 ALA n 1 164 HIS n 1 165 ILE n 1 166 ALA n 1 167 GLY n 1 168 LEU n 1 169 ALA n 1 170 VAL n 1 171 GLY n 1 172 LEU n 1 173 ALA n 1 174 MET n 1 175 ALA n 1 176 PHE n 1 177 VAL n 1 178 ASP n 1 179 SER n 1 180 LEU n 1 181 ASN n 1 182 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'glpG, b3424, JW5687' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET41b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLPG_ECOLI _struct_ref.pdbx_db_accession P09391 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLG SGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMA NGAHIAGLAVGLAMAFVDSLNA ; _struct_ref.pdbx_align_begin 91 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3UBB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 182 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P09391 _struct_ref_seq.db_align_beg 91 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 272 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 91 _struct_ref_seq.pdbx_auth_seq_align_end 272 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3UB non-polymer . 'propan-2-yl hydrogen (S)-[(1R)-1-{[(benzyloxy)carbonyl]amino}ethyl]phosphonate' ? 'C13 H20 N O5 P' 301.275 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3UBB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.60 _exptl_crystal.density_percent_sol 65.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '3M NaCl, pH 7, EVAPORATION, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-09-07 _diffrn_detector.details Si111 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si111 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.075 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.075 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3UBB _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.5 _reflns.number_obs 10287 _reflns.number_all 10287 _reflns.percent_possible_obs 99 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 99 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3UBB _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 9147 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.40 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.961 _refine.ls_d_res_high 2.601 _refine.ls_percent_reflns_obs 99.73 _refine.ls_R_factor_obs 0.2120 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2112 _refine.ls_R_factor_R_free 0.2289 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.85 _refine.ls_number_reflns_R_free 444 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -5.4091 _refine.aniso_B[2][2] -5.4091 _refine.aniso_B[3][3] 10.8181 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.400 _refine.solvent_model_param_bsol 80.000 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.86 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.28 _refine.pdbx_overall_phase_error 22.18 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1398 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 1447 _refine_hist.d_res_high 2.601 _refine_hist.d_res_low 44.961 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 1467 'X-RAY DIFFRACTION' ? f_angle_d 1.115 ? ? 2003 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.803 ? ? 472 'X-RAY DIFFRACTION' ? f_chiral_restr 0.068 ? ? 216 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 239 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.601 2.9769 2828 0.2006 100.00 0.2659 . . 160 . . . . 'X-RAY DIFFRACTION' . 2.9769 3.7503 2906 0.1775 100.00 0.2030 . . 136 . . . . 'X-RAY DIFFRACTION' . 3.7503 44.9677 2969 0.2289 99.00 0.2307 . . 148 . . . . # _struct.entry_id 3UBB _struct.title 'The crystal structure of GlpG in complex with a phosphonofluoridate inhibitor' _struct.pdbx_descriptor 'Rhomboid protease glpG (E.C.3.4.21.105)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UBB _struct_keywords.pdbx_keywords HYDROLASE/INHIBITOR _struct_keywords.text 'HELIX BUNDLE, MEMBRANE, HYDROLASE-INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 4 ? GLY A 25 ? GLY A 94 GLY A 115 1 ? 22 HELX_P HELX_P2 2 GLY A 25 ? ALA A 34 ? GLY A 115 ALA A 124 1 ? 10 HELX_P HELX_P3 3 ASP A 38 ? LYS A 42 ? ASP A 128 LYS A 132 5 ? 5 HELX_P HELX_P4 4 TRP A 46 ? HIS A 51 ? TRP A 136 HIS A 141 1 ? 6 HELX_P HELX_P5 5 ALA A 52 ? MET A 54 ? ALA A 142 MET A 144 5 ? 3 HELX_P HELX_P6 6 SER A 57 ? GLY A 80 ? SER A 147 GLY A 170 1 ? 24 HELX_P HELX_P7 7 GLY A 80 ? GLY A 104 ? GLY A 170 GLY A 194 1 ? 25 HELX_P HELX_P8 8 LEU A 110 ? ASP A 128 ? LEU A 200 ASP A 218 1 ? 19 HELX_P HELX_P9 9 PRO A 129 ? GLY A 132 ? PRO A 219 GLY A 222 5 ? 4 HELX_P HELX_P10 10 GLN A 136 ? PHE A 152 ? GLN A 226 PHE A 242 1 ? 17 HELX_P HELX_P11 11 ALA A 160 ? HIS A 164 ? ALA A 250 HIS A 254 5 ? 5 HELX_P HELX_P12 12 ILE A 165 ? SER A 179 ? ILE A 255 SER A 269 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 111 _struct_conn.ptnr1_label_atom_id OG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id 3UB _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id P _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 201 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 3UB _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.622 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE 3UB A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 MET A 59 ? MET A 149 . ? 1_555 ? 2 AC1 9 HIS A 60 ? HIS A 150 . ? 1_555 ? 3 AC1 9 PHE A 63 ? PHE A 153 . ? 1_555 ? 4 AC1 9 ASN A 64 ? ASN A 154 . ? 1_555 ? 5 AC1 9 GLY A 108 ? GLY A 198 . ? 1_555 ? 6 AC1 9 GLY A 109 ? GLY A 199 . ? 1_555 ? 7 AC1 9 SER A 111 ? SER A 201 . ? 1_555 ? 8 AC1 9 PHE A 155 ? PHE A 245 . ? 1_555 ? 9 AC1 9 HIS A 164 ? HIS A 254 . ? 1_555 ? # _database_PDB_matrix.entry_id 3UBB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UBB _atom_sites.fract_transf_matrix[1][1] 0.008951 _atom_sites.fract_transf_matrix[1][2] 0.005168 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010335 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008210 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 91 ? ? ? A . n A 1 2 ARG 2 92 92 ARG ARG A . n A 1 3 ALA 3 93 93 ALA ALA A . n A 1 4 GLY 4 94 94 GLY GLY A . n A 1 5 PRO 5 95 95 PRO PRO A . n A 1 6 VAL 6 96 96 VAL VAL A . n A 1 7 THR 7 97 97 THR THR A . n A 1 8 TRP 8 98 98 TRP TRP A . n A 1 9 VAL 9 99 99 VAL VAL A . n A 1 10 MET 10 100 100 MET MET A . n A 1 11 MET 11 101 101 MET MET A . n A 1 12 ILE 12 102 102 ILE ILE A . n A 1 13 ALA 13 103 103 ALA ALA A . n A 1 14 CYS 14 104 104 CYS CYS A . n A 1 15 VAL 15 105 105 VAL VAL A . n A 1 16 VAL 16 106 106 VAL VAL A . n A 1 17 VAL 17 107 107 VAL VAL A . n A 1 18 PHE 18 108 108 PHE PHE A . n A 1 19 ILE 19 109 109 ILE ILE A . n A 1 20 ALA 20 110 110 ALA ALA A . n A 1 21 MET 21 111 111 MET MET A . n A 1 22 GLN 22 112 112 GLN GLN A . n A 1 23 ILE 23 113 113 ILE ILE A . n A 1 24 LEU 24 114 114 LEU LEU A . n A 1 25 GLY 25 115 115 GLY GLY A . n A 1 26 ASP 26 116 116 ASP ASP A . n A 1 27 GLN 27 117 117 GLN GLN A . n A 1 28 GLU 28 118 118 GLU GLU A . n A 1 29 VAL 29 119 119 VAL VAL A . n A 1 30 MET 30 120 120 MET MET A . n A 1 31 LEU 31 121 121 LEU LEU A . n A 1 32 TRP 32 122 122 TRP TRP A . n A 1 33 LEU 33 123 123 LEU LEU A . n A 1 34 ALA 34 124 124 ALA ALA A . n A 1 35 TRP 35 125 125 TRP TRP A . n A 1 36 PRO 36 126 126 PRO PRO A . n A 1 37 PHE 37 127 127 PHE PHE A . n A 1 38 ASP 38 128 128 ASP ASP A . n A 1 39 PRO 39 129 129 PRO PRO A . n A 1 40 THR 40 130 130 THR THR A . n A 1 41 LEU 41 131 131 LEU LEU A . n A 1 42 LYS 42 132 132 LYS LYS A . n A 1 43 PHE 43 133 133 PHE PHE A . n A 1 44 GLU 44 134 134 GLU GLU A . n A 1 45 PHE 45 135 135 PHE PHE A . n A 1 46 TRP 46 136 136 TRP TRP A . n A 1 47 ARG 47 137 137 ARG ARG A . n A 1 48 TYR 48 138 138 TYR TYR A . n A 1 49 PHE 49 139 139 PHE PHE A . n A 1 50 THR 50 140 140 THR THR A . n A 1 51 HIS 51 141 141 HIS HIS A . n A 1 52 ALA 52 142 142 ALA ALA A . n A 1 53 LEU 53 143 143 LEU LEU A . n A 1 54 MET 54 144 144 MET MET A . n A 1 55 HIS 55 145 145 HIS HIS A . n A 1 56 PHE 56 146 146 PHE PHE A . n A 1 57 SER 57 147 147 SER SER A . n A 1 58 LEU 58 148 148 LEU LEU A . n A 1 59 MET 59 149 149 MET MET A . n A 1 60 HIS 60 150 150 HIS HIS A . n A 1 61 ILE 61 151 151 ILE ILE A . n A 1 62 LEU 62 152 152 LEU LEU A . n A 1 63 PHE 63 153 153 PHE PHE A . n A 1 64 ASN 64 154 154 ASN ASN A . n A 1 65 LEU 65 155 155 LEU LEU A . n A 1 66 LEU 66 156 156 LEU LEU A . n A 1 67 TRP 67 157 157 TRP TRP A . n A 1 68 TRP 68 158 158 TRP TRP A . n A 1 69 TRP 69 159 159 TRP TRP A . n A 1 70 TYR 70 160 160 TYR TYR A . n A 1 71 LEU 71 161 161 LEU LEU A . n A 1 72 GLY 72 162 162 GLY GLY A . n A 1 73 GLY 73 163 163 GLY GLY A . n A 1 74 ALA 74 164 164 ALA ALA A . n A 1 75 VAL 75 165 165 VAL VAL A . n A 1 76 GLU 76 166 166 GLU GLU A . n A 1 77 LYS 77 167 167 LYS LYS A . n A 1 78 ARG 78 168 168 ARG ARG A . n A 1 79 LEU 79 169 169 LEU LEU A . n A 1 80 GLY 80 170 170 GLY GLY A . n A 1 81 SER 81 171 171 SER SER A . n A 1 82 GLY 82 172 172 GLY GLY A . n A 1 83 LYS 83 173 173 LYS LYS A . n A 1 84 LEU 84 174 174 LEU LEU A . n A 1 85 ILE 85 175 175 ILE ILE A . n A 1 86 VAL 86 176 176 VAL VAL A . n A 1 87 ILE 87 177 177 ILE ILE A . n A 1 88 THR 88 178 178 THR THR A . n A 1 89 LEU 89 179 179 LEU LEU A . n A 1 90 ILE 90 180 180 ILE ILE A . n A 1 91 SER 91 181 181 SER SER A . n A 1 92 ALA 92 182 182 ALA ALA A . n A 1 93 LEU 93 183 183 LEU LEU A . n A 1 94 LEU 94 184 184 LEU LEU A . n A 1 95 SER 95 185 185 SER SER A . n A 1 96 GLY 96 186 186 GLY GLY A . n A 1 97 TYR 97 187 187 TYR TYR A . n A 1 98 VAL 98 188 188 VAL VAL A . n A 1 99 GLN 99 189 189 GLN GLN A . n A 1 100 GLN 100 190 190 GLN GLN A . n A 1 101 LYS 101 191 191 LYS LYS A . n A 1 102 PHE 102 192 192 PHE PHE A . n A 1 103 SER 103 193 193 SER SER A . n A 1 104 GLY 104 194 194 GLY GLY A . n A 1 105 PRO 105 195 195 PRO PRO A . n A 1 106 TRP 106 196 196 TRP TRP A . n A 1 107 PHE 107 197 197 PHE PHE A . n A 1 108 GLY 108 198 198 GLY GLY A . n A 1 109 GLY 109 199 199 GLY GLY A . n A 1 110 LEU 110 200 200 LEU LEU A . n A 1 111 SER 111 201 201 SER SER A . n A 1 112 GLY 112 202 202 GLY GLY A . n A 1 113 VAL 113 203 203 VAL VAL A . n A 1 114 VAL 114 204 204 VAL VAL A . n A 1 115 TYR 115 205 205 TYR TYR A . n A 1 116 ALA 116 206 206 ALA ALA A . n A 1 117 LEU 117 207 207 LEU LEU A . n A 1 118 MET 118 208 208 MET MET A . n A 1 119 GLY 119 209 209 GLY GLY A . n A 1 120 TYR 120 210 210 TYR TYR A . n A 1 121 VAL 121 211 211 VAL VAL A . n A 1 122 TRP 122 212 212 TRP TRP A . n A 1 123 LEU 123 213 213 LEU LEU A . n A 1 124 ARG 124 214 214 ARG ARG A . n A 1 125 GLY 125 215 215 GLY GLY A . n A 1 126 GLU 126 216 216 GLU GLU A . n A 1 127 ARG 127 217 217 ARG ARG A . n A 1 128 ASP 128 218 218 ASP ASP A . n A 1 129 PRO 129 219 219 PRO PRO A . n A 1 130 GLN 130 220 220 GLN GLN A . n A 1 131 SER 131 221 221 SER SER A . n A 1 132 GLY 132 222 222 GLY GLY A . n A 1 133 ILE 133 223 223 ILE ILE A . n A 1 134 TYR 134 224 224 TYR TYR A . n A 1 135 LEU 135 225 225 LEU LEU A . n A 1 136 GLN 136 226 226 GLN GLN A . n A 1 137 ARG 137 227 227 ARG ARG A . n A 1 138 GLY 138 228 228 GLY GLY A . n A 1 139 LEU 139 229 229 LEU LEU A . n A 1 140 ILE 140 230 230 ILE ILE A . n A 1 141 ILE 141 231 231 ILE ILE A . n A 1 142 PHE 142 232 232 PHE PHE A . n A 1 143 ALA 143 233 233 ALA ALA A . n A 1 144 LEU 144 234 234 LEU LEU A . n A 1 145 ILE 145 235 235 ILE ILE A . n A 1 146 TRP 146 236 236 TRP TRP A . n A 1 147 ILE 147 237 237 ILE ILE A . n A 1 148 VAL 148 238 238 VAL VAL A . n A 1 149 ALA 149 239 239 ALA ALA A . n A 1 150 GLY 150 240 240 GLY GLY A . n A 1 151 TRP 151 241 241 TRP TRP A . n A 1 152 PHE 152 242 242 PHE PHE A . n A 1 153 ASP 153 243 243 ASP ASP A . n A 1 154 LEU 154 244 244 LEU LEU A . n A 1 155 PHE 155 245 245 PHE PHE A . n A 1 156 GLY 156 246 246 GLY GLY A . n A 1 157 MET 157 247 247 MET ALA A . n A 1 158 SER 158 248 248 SER SER A . n A 1 159 MET 159 249 249 MET ALA A . n A 1 160 ALA 160 250 250 ALA ALA A . n A 1 161 ASN 161 251 251 ASN ASN A . n A 1 162 GLY 162 252 252 GLY GLY A . n A 1 163 ALA 163 253 253 ALA ALA A . n A 1 164 HIS 164 254 254 HIS HIS A . n A 1 165 ILE 165 255 255 ILE ILE A . n A 1 166 ALA 166 256 256 ALA ALA A . n A 1 167 GLY 167 257 257 GLY GLY A . n A 1 168 LEU 168 258 258 LEU LEU A . n A 1 169 ALA 169 259 259 ALA ALA A . n A 1 170 VAL 170 260 260 VAL VAL A . n A 1 171 GLY 171 261 261 GLY GLY A . n A 1 172 LEU 172 262 262 LEU LEU A . n A 1 173 ALA 173 263 263 ALA ALA A . n A 1 174 MET 174 264 264 MET MET A . n A 1 175 ALA 175 265 265 ALA ALA A . n A 1 176 PHE 176 266 266 PHE PHE A . n A 1 177 VAL 177 267 267 VAL VAL A . n A 1 178 ASP 178 268 268 ASP ASP A . n A 1 179 SER 179 269 269 SER SER A . n A 1 180 LEU 180 270 270 LEU LEU A . n A 1 181 ASN 181 271 ? ? ? A . n A 1 182 ALA 182 272 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3UB 1 301 1 3UB 3UB A . C 3 HOH 1 401 1 HOH HOH A . C 3 HOH 2 402 2 HOH HOH A . C 3 HOH 3 403 3 HOH HOH A . C 3 HOH 4 404 4 HOH HOH A . C 3 HOH 5 405 5 HOH HOH A . C 3 HOH 6 406 6 HOH HOH A . C 3 HOH 7 407 7 HOH HOH A . C 3 HOH 8 408 8 HOH HOH A . C 3 HOH 9 409 10 HOH HOH A . C 3 HOH 10 410 11 HOH HOH A . C 3 HOH 11 411 12 HOH HOH A . C 3 HOH 12 412 13 HOH HOH A . C 3 HOH 13 413 15 HOH HOH A . C 3 HOH 14 414 16 HOH HOH A . C 3 HOH 15 415 17 HOH HOH A . C 3 HOH 16 416 18 HOH HOH A . C 3 HOH 17 417 19 HOH HOH A . C 3 HOH 18 418 20 HOH HOH A . C 3 HOH 19 419 22 HOH HOH A . C 3 HOH 20 420 25 HOH HOH A . C 3 HOH 21 421 27 HOH HOH A . C 3 HOH 22 422 28 HOH HOH A . C 3 HOH 23 423 29 HOH HOH A . C 3 HOH 24 424 30 HOH HOH A . C 3 HOH 25 425 31 HOH HOH A . C 3 HOH 26 426 33 HOH HOH A . C 3 HOH 27 427 35 HOH HOH A . C 3 HOH 28 428 36 HOH HOH A . C 3 HOH 29 429 38 HOH HOH A . C 3 HOH 30 430 40 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2,3 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 7170 ? 2 MORE -38 ? 2 'SSA (A^2)' 22970 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 55.8610000000 0.8660254038 -0.5000000000 0.0000000000 96.7540901616 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -55.8610000000 -0.8660254038 -0.5000000000 0.0000000000 96.7540901616 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-13 2 'Structure model' 1 1 2019-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.name' 3 2 'Structure model' '_software.version' 4 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(phenix.refine: 1.7.2_869)' ? 1 REFMAC refinement . ? 2 CBASS 'data collection' . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 REFMAC phasing . ? 6 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLN _pdbx_validate_symm_contact.auth_seq_id_1 226 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 411 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_565 _pdbx_validate_symm_contact.dist 2.08 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 139 ? ? -131.95 -37.95 2 1 ASP A 218 ? ? -152.60 71.55 3 1 MET A 247 ? ? -90.95 -77.94 4 1 MET A 249 ? ? -152.12 20.93 5 1 ASN A 251 ? ? 75.54 -155.98 6 1 SER A 269 ? ? -97.49 42.69 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 167 ? CG ? A LYS 77 CG 2 1 Y 1 A LYS 167 ? CD ? A LYS 77 CD 3 1 Y 1 A LYS 167 ? CE ? A LYS 77 CE 4 1 Y 1 A LYS 167 ? NZ ? A LYS 77 NZ 5 1 Y 1 A ARG 168 ? CG ? A ARG 78 CG 6 1 Y 1 A ARG 168 ? CD ? A ARG 78 CD 7 1 Y 1 A ARG 168 ? NE ? A ARG 78 NE 8 1 Y 1 A ARG 168 ? CZ ? A ARG 78 CZ 9 1 Y 1 A ARG 168 ? NH1 ? A ARG 78 NH1 10 1 Y 1 A ARG 168 ? NH2 ? A ARG 78 NH2 11 1 Y 1 A LYS 191 ? CG ? A LYS 101 CG 12 1 Y 1 A LYS 191 ? CD ? A LYS 101 CD 13 1 Y 1 A LYS 191 ? CE ? A LYS 101 CE 14 1 Y 1 A LYS 191 ? NZ ? A LYS 101 NZ 15 1 Y 1 A GLU 216 ? CG ? A GLU 126 CG 16 1 Y 1 A GLU 216 ? CD ? A GLU 126 CD 17 1 Y 1 A GLU 216 ? OE1 ? A GLU 126 OE1 18 1 Y 1 A GLU 216 ? OE2 ? A GLU 126 OE2 19 1 Y 1 A GLN 220 ? CG ? A GLN 130 CG 20 1 Y 1 A GLN 220 ? CD ? A GLN 130 CD 21 1 Y 1 A GLN 220 ? OE1 ? A GLN 130 OE1 22 1 Y 1 A GLN 220 ? NE2 ? A GLN 130 NE2 23 1 Y 1 A ILE 223 ? CG1 ? A ILE 133 CG1 24 1 Y 1 A ILE 223 ? CG2 ? A ILE 133 CG2 25 1 Y 1 A ILE 223 ? CD1 ? A ILE 133 CD1 26 1 Y 1 A MET 247 ? CG ? A MET 157 CG 27 1 Y 1 A MET 247 ? SD ? A MET 157 SD 28 1 Y 1 A MET 247 ? CE ? A MET 157 CE 29 1 Y 1 A MET 249 ? CG ? A MET 159 CG 30 1 Y 1 A MET 249 ? SD ? A MET 159 SD 31 1 Y 1 A MET 249 ? CE ? A MET 159 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 91 ? A GLU 1 2 1 Y 1 A ASN 271 ? A ASN 181 3 1 Y 1 A ALA 272 ? A ALA 182 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'propan-2-yl hydrogen (S)-[(1R)-1-{[(benzyloxy)carbonyl]amino}ethyl]phosphonate' 3UB 3 water HOH #