HEADER CELL ADHESION 24-OCT-11 3UBG TITLE CRYSTAL STRUCTURE OF DROSOPHILA N-CADHERIN EC1-3, II COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAL-CADHERIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 434-753; COMPND 5 SYNONYM: CADHERIN-N, DN-CADHERIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CADN, CG7100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSMT3 KEYWDS CADHERIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR X.JIN,M.A.WALKER,L.SHAPIRO REVDAT 6 28-FEB-24 3UBG 1 REMARK SEQADV LINK REVDAT 5 08-NOV-17 3UBG 1 REMARK REVDAT 4 12-NOV-14 3UBG 1 AUTHOR REVDAT 3 26-JUN-13 3UBG 1 JRNL REVDAT 2 18-JAN-12 3UBG 1 JRNL REVDAT 1 21-DEC-11 3UBG 0 JRNL AUTH X.JIN,M.A.WALKER,K.FELSOVALYI,J.VENDOME,F.BAHNA, JRNL AUTH 2 S.MANNEPALLI,F.COSMANESCU,G.AHLSEN,B.HONIG,L.SHAPIRO JRNL TITL CRYSTAL STRUCTURES OF DROSOPHILA N-CADHERIN ECTODOMAIN JRNL TITL 2 REGIONS REVEAL A WIDELY USED CLASS OF CA2+-FREE INTERDOMAIN JRNL TITL 3 LINKERS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 E127 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22171007 JRNL DOI 10.1073/PNAS.1117538108 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9733 - 5.5284 0.99 2616 145 0.2017 0.2323 REMARK 3 2 5.5284 - 4.4035 1.00 2606 139 0.1501 0.2037 REMARK 3 3 4.4035 - 3.8514 1.00 2598 128 0.1675 0.2327 REMARK 3 4 3.8514 - 3.5013 1.00 2591 137 0.1936 0.2784 REMARK 3 5 3.5013 - 3.2515 1.00 2576 139 0.1881 0.2546 REMARK 3 6 3.2515 - 3.0605 1.00 2603 123 0.1919 0.2772 REMARK 3 7 3.0605 - 2.9077 1.00 2568 138 0.2018 0.3140 REMARK 3 8 2.9077 - 2.7815 1.00 2577 154 0.2320 0.3313 REMARK 3 9 2.7815 - 2.6747 1.00 2574 128 0.2590 0.3426 REMARK 3 10 2.6747 - 2.5826 1.00 2555 148 0.2815 0.3797 REMARK 3 11 2.5826 - 2.5020 0.98 2545 140 0.3085 0.3781 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 49.57 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.910 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.67630 REMARK 3 B22 (A**2) : 13.73560 REMARK 3 B33 (A**2) : -5.05920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.65260 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5029 REMARK 3 ANGLE : 1.083 6821 REMARK 3 CHIRALITY : 0.069 753 REMARK 3 PLANARITY : 0.004 905 REMARK 3 DIHEDRAL : 15.298 1909 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9191 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32100 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 34% PEG 3350, 0.1M LITHIUM SULFATE, REMARK 280 0.1M TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.10900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.88450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.10900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 56.88450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 438 REMARK 465 MET A 515 REMARK 465 GLY A 516 REMARK 465 HIS A 517 REMARK 465 ASN A 518 REMARK 465 ALA A 519 REMARK 465 GLY A 520 REMARK 465 ASP A 748 REMARK 465 VAL A 749 REMARK 465 ASN A 750 REMARK 465 ASP A 751 REMARK 465 ASN A 752 REMARK 465 ALA A 753 REMARK 465 SER B 438 REMARK 465 VAL B 749 REMARK 465 ASN B 750 REMARK 465 ASP B 751 REMARK 465 ASN B 752 REMARK 465 ALA B 753 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 469 CG CD CE NZ REMARK 470 LYS B 522 CG CD CE NZ REMARK 470 ARG B 630 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 631 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 688 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 247 O HOH A 290 2.11 REMARK 500 NH1 ARG B 601 O HOH B 350 2.12 REMARK 500 OD1 ASP B 669 NZ LYS B 707 2.15 REMARK 500 NH1 ARG B 475 O HOH B 2 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 492 -85.93 -100.88 REMARK 500 ASP A 538 11.13 -146.89 REMARK 500 ASN A 577 84.66 -154.49 REMARK 500 ARG A 630 -65.02 -94.42 REMARK 500 ASP A 667 -1.89 71.90 REMARK 500 ASP A 732 31.41 -86.92 REMARK 500 LYS B 492 -80.09 -92.74 REMARK 500 ASP B 538 14.99 -151.76 REMARK 500 ASP B 611 1.21 57.24 REMARK 500 GLN B 664 124.60 -37.77 REMARK 500 THR B 747 -157.15 -123.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 576 NE2 REMARK 620 2 HOH B 115 O 101.9 REMARK 620 3 HOH B 145 O 93.2 159.7 REMARK 620 4 HIS B 576 NE2 95.7 89.6 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 903 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 126 O REMARK 620 2 GLU A 450 OE2 91.0 REMARK 620 3 ASP A 496 OD1 80.6 91.2 REMARK 620 4 GLU A 498 OE1 153.6 80.5 74.6 REMARK 620 5 ASP A 538 OD2 77.6 84.5 157.7 125.8 REMARK 620 6 ASP A 538 OD1 123.0 95.1 155.3 82.9 47.0 REMARK 620 7 GLU A 539 OE2 92.2 176.4 90.8 97.2 94.7 81.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 902 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 450 OE1 REMARK 620 2 GLU A 498 OE2 115.6 REMARK 620 3 GLU A 498 OE1 90.9 48.8 REMARK 620 4 ASP A 535 OD1 77.1 74.3 108.8 REMARK 620 5 VAL A 536 O 74.1 150.1 160.0 81.1 REMARK 620 6 ASP A 538 OD1 84.9 125.9 84.0 157.9 81.7 REMARK 620 7 ASP A 573 OD1 163.9 80.5 101.0 108.7 91.7 85.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 537 OD1 REMARK 620 2 GLU A 539 O 125.6 REMARK 620 3 ASP A 571 OD2 150.9 81.1 REMARK 620 4 ASP A 571 OD1 124.7 96.9 52.5 REMARK 620 5 ASP A 573 OD2 62.4 90.7 136.1 86.4 REMARK 620 6 ASP A 622 OD2 69.6 149.8 81.3 91.6 118.8 REMARK 620 7 GLN A 633 OE1 73.4 80.3 104.1 156.4 117.0 80.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 904 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 10 O REMARK 620 2 GLU B 450 OE2 87.4 REMARK 620 3 ASP B 496 OD1 69.4 68.6 REMARK 620 4 GLU B 498 OE1 136.0 67.3 68.0 REMARK 620 5 ASP B 538 OD1 129.8 107.7 160.8 93.0 REMARK 620 6 ASP B 538 OD2 81.4 100.8 149.0 136.5 49.2 REMARK 620 7 GLU B 539 OE2 89.2 155.8 87.8 99.6 92.8 102.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 905 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 450 OE1 REMARK 620 2 GLU B 498 OE2 122.0 REMARK 620 3 GLU B 498 OE1 86.4 49.1 REMARK 620 4 ASP B 535 OD1 80.8 87.8 116.0 REMARK 620 5 VAL B 536 O 82.9 145.7 165.2 72.3 REMARK 620 6 ASP B 538 OD1 79.3 125.7 89.4 146.5 78.6 REMARK 620 7 ASP B 573 OD1 160.9 75.7 103.3 108.6 84.4 84.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 906 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 537 OD1 REMARK 620 2 GLU B 539 O 120.2 REMARK 620 3 ASP B 571 OD2 164.6 75.2 REMARK 620 4 ASP B 571 OD1 123.9 91.3 51.9 REMARK 620 5 ASP B 573 OD2 58.9 81.4 129.5 85.3 REMARK 620 6 ASP B 622 OD2 72.7 157.4 92.5 95.9 120.4 REMARK 620 7 GLN B 633 OE1 71.5 85.4 111.3 163.0 110.6 81.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 906 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UBF RELATED DB: PDB REMARK 900 RELATED ID: 3UBH RELATED DB: PDB DBREF 3UBG A 439 753 UNP O15943 CADN_DROME 439 753 DBREF 3UBG B 439 753 UNP O15943 CADN_DROME 439 753 SEQADV 3UBG SER A 438 UNP O15943 EXPRESSION TAG SEQADV 3UBG SER B 438 UNP O15943 EXPRESSION TAG SEQRES 1 A 316 SER ALA VAL ARG PRO THR LYS ARG ILE GLU PHE THR GLU SEQRES 2 A 316 ALA ASP GLY ASP THR GLU GLY LYS SER VAL PHE GLN LEU SEQRES 3 A 316 GLU LYS GLU THR ASP LYS GLU THR PHE LYS ILE ARG ASP SEQRES 4 A 316 ASP ASN PRO TRP VAL THR VAL GLU THR ASN GLY ALA VAL SEQRES 5 A 316 ARG VAL LYS LYS LYS TRP ASP TYR GLU GLU LEU GLY PRO SEQRES 6 A 316 GLU LYS THR ILE ASP PHE TRP VAL ILE ILE THR ASN MET SEQRES 7 A 316 GLY HIS ASN ALA GLY ILE LYS TYR THR ASP ASN GLN ARG SEQRES 8 A 316 VAL ILE ILE LEU VAL LYS ASP VAL ASN ASP GLU PRO PRO SEQRES 9 A 316 TYR PHE ILE ASN ARG PRO LEU PRO MET GLN ALA VAL VAL SEQRES 10 A 316 GLN LEU ASN ALA PRO PRO ASN THR PRO VAL PHE THR LEU SEQRES 11 A 316 GLN ALA ARG ASP PRO ASP THR ASP HIS ASN ILE HIS TYR SEQRES 12 A 316 PHE ILE VAL ARG ASP ARG THR GLY GLY ARG PHE GLU VAL SEQRES 13 A 316 ASP GLU ARG SER GLY VAL VAL ARG THR ARG GLY THR ASP SEQRES 14 A 316 LEU PHE GLN LEU ASP MET GLU TYR VAL LEU TYR VAL LYS SEQRES 15 A 316 ALA GLU ASP GLN ASN GLY LYS VAL ASP ASP ARG ARG PHE SEQRES 16 A 316 GLN SER THR PRO GLU GLU ARG LEU SER ILE VAL GLY GLY SEQRES 17 A 316 LYS ARG ALA PRO GLN PHE TYR MET PRO SER TYR GLU ALA SEQRES 18 A 316 GLU ILE PRO GLU ASN GLN LYS LYS ASP SER ASP ILE ILE SEQRES 19 A 316 SER ILE LYS ALA LYS SER PHE ALA ASP ARG GLU ILE ARG SEQRES 20 A 316 TYR THR LEU LYS ALA GLN GLY GLN GLY ALA GLY THR PHE SEQRES 21 A 316 ASN ILE GLY PRO THR SER GLY ILE VAL LYS LEU ALA LYS SEQRES 22 A 316 GLU LEU ASP PHE GLU ASP LEU ARG GLN PRO HIS VAL TYR SEQRES 23 A 316 SER LEU ILE VAL THR ALA THR GLU ASP SER GLY GLY PHE SEQRES 24 A 316 SER THR SER VAL ASP LEU THR ILE ARG VAL THR ASP VAL SEQRES 25 A 316 ASN ASP ASN ALA SEQRES 1 B 316 SER ALA VAL ARG PRO THR LYS ARG ILE GLU PHE THR GLU SEQRES 2 B 316 ALA ASP GLY ASP THR GLU GLY LYS SER VAL PHE GLN LEU SEQRES 3 B 316 GLU LYS GLU THR ASP LYS GLU THR PHE LYS ILE ARG ASP SEQRES 4 B 316 ASP ASN PRO TRP VAL THR VAL GLU THR ASN GLY ALA VAL SEQRES 5 B 316 ARG VAL LYS LYS LYS TRP ASP TYR GLU GLU LEU GLY PRO SEQRES 6 B 316 GLU LYS THR ILE ASP PHE TRP VAL ILE ILE THR ASN MET SEQRES 7 B 316 GLY HIS ASN ALA GLY ILE LYS TYR THR ASP ASN GLN ARG SEQRES 8 B 316 VAL ILE ILE LEU VAL LYS ASP VAL ASN ASP GLU PRO PRO SEQRES 9 B 316 TYR PHE ILE ASN ARG PRO LEU PRO MET GLN ALA VAL VAL SEQRES 10 B 316 GLN LEU ASN ALA PRO PRO ASN THR PRO VAL PHE THR LEU SEQRES 11 B 316 GLN ALA ARG ASP PRO ASP THR ASP HIS ASN ILE HIS TYR SEQRES 12 B 316 PHE ILE VAL ARG ASP ARG THR GLY GLY ARG PHE GLU VAL SEQRES 13 B 316 ASP GLU ARG SER GLY VAL VAL ARG THR ARG GLY THR ASP SEQRES 14 B 316 LEU PHE GLN LEU ASP MET GLU TYR VAL LEU TYR VAL LYS SEQRES 15 B 316 ALA GLU ASP GLN ASN GLY LYS VAL ASP ASP ARG ARG PHE SEQRES 16 B 316 GLN SER THR PRO GLU GLU ARG LEU SER ILE VAL GLY GLY SEQRES 17 B 316 LYS ARG ALA PRO GLN PHE TYR MET PRO SER TYR GLU ALA SEQRES 18 B 316 GLU ILE PRO GLU ASN GLN LYS LYS ASP SER ASP ILE ILE SEQRES 19 B 316 SER ILE LYS ALA LYS SER PHE ALA ASP ARG GLU ILE ARG SEQRES 20 B 316 TYR THR LEU LYS ALA GLN GLY GLN GLY ALA GLY THR PHE SEQRES 21 B 316 ASN ILE GLY PRO THR SER GLY ILE VAL LYS LEU ALA LYS SEQRES 22 B 316 GLU LEU ASP PHE GLU ASP LEU ARG GLN PRO HIS VAL TYR SEQRES 23 B 316 SER LEU ILE VAL THR ALA THR GLU ASP SER GLY GLY PHE SEQRES 24 B 316 SER THR SER VAL ASP LEU THR ILE ARG VAL THR ASP VAL SEQRES 25 B 316 ASN ASP ASN ALA HET ZN A 1 1 HET CA A 901 1 HET CA A 902 1 HET CA A 903 1 HET CA B 904 1 HET CA B 905 1 HET CA B 906 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 3 ZN ZN 2+ FORMUL 4 CA 6(CA 2+) FORMUL 10 HOH *396(H2 O) HELIX 1 1 ALA A 451 ASP A 454 5 4 HELIX 2 2 ASP A 496 LEU A 500 5 5 HELIX 3 3 ALA B 451 ASP B 454 5 4 HELIX 4 4 ASP B 496 LEU B 500 5 5 SHEET 1 A 4 VAL A 440 THR A 449 0 SHEET 2 A 4 THR A 524 LYS A 534 1 O ILE A 530 N LYS A 444 SHEET 3 A 4 THR A 505 THR A 513 -1 N PHE A 508 O VAL A 529 SHEET 4 A 4 THR A 471 ILE A 474 -1 N LYS A 473 O ILE A 511 SHEET 1 B 3 SER A 459 GLN A 462 0 SHEET 2 B 3 ALA A 488 VAL A 491 -1 O VAL A 489 N PHE A 461 SHEET 3 B 3 VAL A 481 VAL A 483 -1 N THR A 482 O ARG A 490 SHEET 1 C 2 TYR A 542 PHE A 543 0 SHEET 2 C 2 ALA A 569 ARG A 570 -1 O ARG A 570 N TYR A 542 SHEET 1 D 4 MET A 550 VAL A 554 0 SHEET 2 D 4 GLU A 638 GLY A 644 1 O VAL A 643 N ALA A 552 SHEET 3 D 4 GLU A 613 LYS A 626 -1 N TYR A 614 O ILE A 642 SHEET 4 D 4 ILE A 578 ASP A 585 -1 N VAL A 583 O TYR A 617 SHEET 1 E 4 MET A 550 VAL A 554 0 SHEET 2 E 4 GLU A 638 GLY A 644 1 O VAL A 643 N ALA A 552 SHEET 3 E 4 GLU A 613 LYS A 626 -1 N TYR A 614 O ILE A 642 SHEET 4 E 4 PHE A 632 SER A 634 -1 O GLN A 633 N GLY A 625 SHEET 1 F 3 PRO A 563 THR A 566 0 SHEET 2 F 3 VAL A 599 THR A 602 -1 O VAL A 600 N VAL A 564 SHEET 3 F 3 PHE A 591 VAL A 593 -1 N GLU A 592 O ARG A 601 SHEET 1 G 2 GLN A 650 PHE A 651 0 SHEET 2 G 2 ALA A 675 LYS A 676 -1 O LYS A 676 N GLN A 650 SHEET 1 H 4 TYR A 656 PRO A 661 0 SHEET 2 H 4 SER A 737 THR A 747 1 O THR A 743 N TYR A 656 SHEET 3 H 4 VAL A 722 GLU A 731 -1 N ALA A 729 O THR A 738 SHEET 4 H 4 ILE A 683 ALA A 689 -1 N THR A 686 O THR A 728 SHEET 1 I 3 ASP A 669 SER A 672 0 SHEET 2 I 3 ILE A 705 LEU A 708 -1 O VAL A 706 N ILE A 670 SHEET 3 I 3 PHE A 697 ILE A 699 -1 N ASN A 698 O LYS A 707 SHEET 1 J 4 VAL B 440 THR B 449 0 SHEET 2 J 4 THR B 524 LYS B 534 1 O ASN B 526 N ARG B 441 SHEET 3 J 4 THR B 505 ASN B 514 -1 N ILE B 506 O ILE B 531 SHEET 4 J 4 GLU B 470 ILE B 474 -1 N LYS B 473 O ILE B 511 SHEET 1 K 3 SER B 459 GLN B 462 0 SHEET 2 K 3 ALA B 488 VAL B 491 -1 O VAL B 489 N PHE B 461 SHEET 3 K 3 VAL B 481 VAL B 483 -1 N THR B 482 O ARG B 490 SHEET 1 L 2 TYR B 542 PHE B 543 0 SHEET 2 L 2 ALA B 569 ARG B 570 -1 O ARG B 570 N TYR B 542 SHEET 1 M 4 GLN B 551 VAL B 554 0 SHEET 2 M 4 GLU B 638 GLY B 644 1 O VAL B 643 N ALA B 552 SHEET 3 M 4 GLU B 613 LYS B 626 -1 N TYR B 614 O ILE B 642 SHEET 4 M 4 ILE B 578 ASP B 585 -1 N VAL B 583 O TYR B 617 SHEET 1 N 4 GLN B 551 VAL B 554 0 SHEET 2 N 4 GLU B 638 GLY B 644 1 O VAL B 643 N ALA B 552 SHEET 3 N 4 GLU B 613 LYS B 626 -1 N TYR B 614 O ILE B 642 SHEET 4 N 4 PHE B 632 SER B 634 -1 O GLN B 633 N GLY B 625 SHEET 1 O 3 PRO B 563 THR B 566 0 SHEET 2 O 3 VAL B 599 THR B 602 -1 O VAL B 600 N VAL B 564 SHEET 3 O 3 PHE B 591 VAL B 593 -1 N GLU B 592 O ARG B 601 SHEET 1 P 2 GLN B 650 PHE B 651 0 SHEET 2 P 2 ALA B 675 LYS B 676 -1 O LYS B 676 N GLN B 650 SHEET 1 Q 4 SER B 655 PRO B 661 0 SHEET 2 Q 4 SER B 737 THR B 747 1 O THR B 747 N ILE B 660 SHEET 3 Q 4 VAL B 722 GLU B 731 -1 N ALA B 729 O THR B 738 SHEET 4 Q 4 ILE B 683 ALA B 689 -1 N THR B 686 O THR B 728 SHEET 1 R 3 ASP B 669 SER B 672 0 SHEET 2 R 3 ILE B 705 LEU B 708 -1 O VAL B 706 N ILE B 670 SHEET 3 R 3 PHE B 697 ILE B 699 -1 N ASN B 698 O LYS B 707 LINK ZN ZN A 1 NE2 HIS A 576 1555 1555 2.18 LINK ZN ZN A 1 O HOH B 115 1555 1555 2.37 LINK ZN ZN A 1 O HOH B 145 1555 1555 2.56 LINK ZN ZN A 1 NE2 HIS B 576 1555 1555 2.10 LINK O HOH A 126 CA CA A 903 1555 1555 2.75 LINK OE1 GLU A 450 CA CA A 902 1555 1555 2.55 LINK OE2 GLU A 450 CA CA A 903 1555 1555 2.54 LINK OD1 ASP A 496 CA CA A 903 1555 1555 2.54 LINK OE2 GLU A 498 CA CA A 902 1555 1555 2.58 LINK OE1 GLU A 498 CA CA A 902 1555 1555 2.74 LINK OE1 GLU A 498 CA CA A 903 1555 1555 2.51 LINK OD1 ASP A 535 CA CA A 902 1555 1555 2.36 LINK O VAL A 536 CA CA A 902 1555 1555 2.39 LINK OD1 ASN A 537 CA CA A 901 1555 1555 2.50 LINK OD1 ASP A 538 CA CA A 902 1555 1555 2.54 LINK OD2 ASP A 538 CA CA A 903 1555 1555 2.64 LINK OD1 ASP A 538 CA CA A 903 1555 1555 2.82 LINK O GLU A 539 CA CA A 901 1555 1555 2.37 LINK OE2 GLU A 539 CA CA A 903 1555 1555 2.48 LINK OD2 ASP A 571 CA CA A 901 1555 1555 2.45 LINK OD1 ASP A 571 CA CA A 901 1555 1555 2.57 LINK OD2 ASP A 573 CA CA A 901 1555 1555 2.40 LINK OD1 ASP A 573 CA CA A 902 1555 1555 2.52 LINK OD2 ASP A 622 CA CA A 901 1555 1555 2.44 LINK OE1 GLN A 633 CA CA A 901 1555 1555 2.62 LINK O HOH B 10 CA CA B 904 1555 1555 2.72 LINK OE2 GLU B 450 CA CA B 904 1555 1555 2.33 LINK OE1 GLU B 450 CA CA B 905 1555 1555 2.83 LINK OD1 ASP B 496 CA CA B 904 1555 1555 2.57 LINK OE1 GLU B 498 CA CA B 904 1555 1555 2.56 LINK OE2 GLU B 498 CA CA B 905 1555 1555 2.58 LINK OE1 GLU B 498 CA CA B 905 1555 1555 2.71 LINK OD1 ASP B 535 CA CA B 905 1555 1555 2.39 LINK O VAL B 536 CA CA B 905 1555 1555 2.61 LINK OD1 ASN B 537 CA CA B 906 1555 1555 2.47 LINK OD1 ASP B 538 CA CA B 904 1555 1555 2.59 LINK OD2 ASP B 538 CA CA B 904 1555 1555 2.66 LINK OD1 ASP B 538 CA CA B 905 1555 1555 2.60 LINK OE2 GLU B 539 CA CA B 904 1555 1555 2.55 LINK O GLU B 539 CA CA B 906 1555 1555 2.43 LINK OD2 ASP B 571 CA CA B 906 1555 1555 2.51 LINK OD1 ASP B 571 CA CA B 906 1555 1555 2.60 LINK OD1 ASP B 573 CA CA B 905 1555 1555 2.58 LINK OD2 ASP B 573 CA CA B 906 1555 1555 2.54 LINK OD2 ASP B 622 CA CA B 906 1555 1555 2.38 LINK OE1 GLN B 633 CA CA B 906 1555 1555 2.45 CISPEP 1 ARG A 546 PRO A 547 0 -1.14 CISPEP 2 LEU A 548 PRO A 549 0 -0.51 CISPEP 3 ARG B 546 PRO B 547 0 0.65 CISPEP 4 LEU B 548 PRO B 549 0 -0.96 SITE 1 AC1 4 HIS A 576 HOH B 115 HOH B 145 HIS B 576 SITE 1 AC2 6 ASN A 537 GLU A 539 ASP A 571 ASP A 573 SITE 2 AC2 6 ASP A 622 GLN A 633 SITE 1 AC3 6 GLU A 450 GLU A 498 ASP A 535 VAL A 536 SITE 2 AC3 6 ASP A 538 ASP A 573 SITE 1 AC4 6 HOH A 126 GLU A 450 ASP A 496 GLU A 498 SITE 2 AC4 6 ASP A 538 GLU A 539 SITE 1 AC5 7 HOH B 10 GLU B 450 ASP B 496 GLU B 498 SITE 2 AC5 7 ASP B 538 GLU B 539 CA B 905 SITE 1 AC6 7 GLU B 450 GLU B 498 ASP B 535 VAL B 536 SITE 2 AC6 7 ASP B 538 ASP B 573 CA B 904 SITE 1 AC7 6 ASN B 537 GLU B 539 ASP B 571 ASP B 573 SITE 2 AC7 6 ASP B 622 GLN B 633 CRYST1 106.218 113.769 87.872 90.00 123.57 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009415 0.000000 0.006247 0.00000 SCALE2 0.000000 0.008790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013658 0.00000