data_3UCH # _entry.id 3UCH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UCH pdb_00003uch 10.2210/pdb3uch/pdb RCSB RCSB068580 ? ? WWPDB D_1000068580 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 422541 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3UCH _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-10-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for T-Cell Biology (TCELL)' 2 # _citation.id primary _citation.title 'Crystal structure of a Hypotherical Peptidyl-prolyl cis-trans isomerase E (PPIE) from Homo sapiens at 2.50 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joint Center for Structural Genomics (JCSG)' 1 ? primary 'Partnership for T-Cell Biology' 2 ? # _cell.entry_id 3UCH _cell.length_a 116.232 _cell.length_b 116.232 _cell.length_c 116.232 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UCH _symmetry.Int_Tables_number 199 _symmetry.space_group_name_H-M 'I 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-prolyl cis-trans isomerase E' 19319.230 1 5.2.1.8 ? 'residues 129-301' ? 2 water nat water 18.015 49 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PPIase E, Cyclophilin E, Cyclophilin-33, Rotamase E' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GGEPIAKKARSNPQVY(MSE)DIKIGNKPAGRIQ(MSE)LLRSDVVP(MSE)TAENFRCLCTHEKGFGFKGSSFHRIIPQ F(MSE)CQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLS(MSE)ANSGPNTNGSQFFLTCDKTDWLDGKHVVFGE VTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEYV ; _entity_poly.pdbx_seq_one_letter_code_can ;GGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHN GTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK PKQKVIIADCGEYV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 422541 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 GLU n 1 4 PRO n 1 5 ILE n 1 6 ALA n 1 7 LYS n 1 8 LYS n 1 9 ALA n 1 10 ARG n 1 11 SER n 1 12 ASN n 1 13 PRO n 1 14 GLN n 1 15 VAL n 1 16 TYR n 1 17 MSE n 1 18 ASP n 1 19 ILE n 1 20 LYS n 1 21 ILE n 1 22 GLY n 1 23 ASN n 1 24 LYS n 1 25 PRO n 1 26 ALA n 1 27 GLY n 1 28 ARG n 1 29 ILE n 1 30 GLN n 1 31 MSE n 1 32 LEU n 1 33 LEU n 1 34 ARG n 1 35 SER n 1 36 ASP n 1 37 VAL n 1 38 VAL n 1 39 PRO n 1 40 MSE n 1 41 THR n 1 42 ALA n 1 43 GLU n 1 44 ASN n 1 45 PHE n 1 46 ARG n 1 47 CYS n 1 48 LEU n 1 49 CYS n 1 50 THR n 1 51 HIS n 1 52 GLU n 1 53 LYS n 1 54 GLY n 1 55 PHE n 1 56 GLY n 1 57 PHE n 1 58 LYS n 1 59 GLY n 1 60 SER n 1 61 SER n 1 62 PHE n 1 63 HIS n 1 64 ARG n 1 65 ILE n 1 66 ILE n 1 67 PRO n 1 68 GLN n 1 69 PHE n 1 70 MSE n 1 71 CYS n 1 72 GLN n 1 73 GLY n 1 74 GLY n 1 75 ASP n 1 76 PHE n 1 77 THR n 1 78 ASN n 1 79 HIS n 1 80 ASN n 1 81 GLY n 1 82 THR n 1 83 GLY n 1 84 GLY n 1 85 LYS n 1 86 SER n 1 87 ILE n 1 88 TYR n 1 89 GLY n 1 90 LYS n 1 91 LYS n 1 92 PHE n 1 93 ASP n 1 94 ASP n 1 95 GLU n 1 96 ASN n 1 97 PHE n 1 98 ILE n 1 99 LEU n 1 100 LYS n 1 101 HIS n 1 102 THR n 1 103 GLY n 1 104 PRO n 1 105 GLY n 1 106 LEU n 1 107 LEU n 1 108 SER n 1 109 MSE n 1 110 ALA n 1 111 ASN n 1 112 SER n 1 113 GLY n 1 114 PRO n 1 115 ASN n 1 116 THR n 1 117 ASN n 1 118 GLY n 1 119 SER n 1 120 GLN n 1 121 PHE n 1 122 PHE n 1 123 LEU n 1 124 THR n 1 125 CYS n 1 126 ASP n 1 127 LYS n 1 128 THR n 1 129 ASP n 1 130 TRP n 1 131 LEU n 1 132 ASP n 1 133 GLY n 1 134 LYS n 1 135 HIS n 1 136 VAL n 1 137 VAL n 1 138 PHE n 1 139 GLY n 1 140 GLU n 1 141 VAL n 1 142 THR n 1 143 GLU n 1 144 GLY n 1 145 LEU n 1 146 ASP n 1 147 VAL n 1 148 LEU n 1 149 ARG n 1 150 GLN n 1 151 ILE n 1 152 GLU n 1 153 ALA n 1 154 GLN n 1 155 GLY n 1 156 SER n 1 157 LYS n 1 158 ASP n 1 159 GLY n 1 160 LYS n 1 161 PRO n 1 162 LYS n 1 163 GLN n 1 164 LYS n 1 165 VAL n 1 166 ILE n 1 167 ILE n 1 168 ALA n 1 169 ASP n 1 170 CYS n 1 171 GLY n 1 172 GLU n 1 173 TYR n 1 174 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC008451, CYP33, PPIE' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PPIE_HUMAN _struct_ref.pdbx_db_accession Q9UNP9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNG TGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKP KQKVIIADCGEYV ; _struct_ref.pdbx_align_begin 129 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3UCH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 174 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UNP9 _struct_ref_seq.db_align_beg 129 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 301 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 129 _struct_ref_seq.pdbx_auth_seq_align_end 301 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3UCH _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9UNP9 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3UCH # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.39 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 63.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '20.0% PEG-1000, 0.1M TRIS pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (ho rizontal focusing)' _diffrn_detector.pdbx_collection_date 2011-07-21 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97894 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength 0.97894 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3UCH _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 29.058 _reflns.number_all 9184 _reflns.number_obs 9184 _reflns.pdbx_netI_over_sigmaI 17.200 _reflns.pdbx_Rsym_value 0.149 _reflns.pdbx_redundancy 23.200 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.500 2.570 ? 7119 ? 0.801 2.7 0.801 ? 12.000 ? 593 100.000 1 1 2.570 2.640 ? 15292 ? 1.168 4.3 1.168 ? 23.700 ? 646 100.000 2 1 2.640 2.710 ? 15869 ? 1.024 5.1 1.024 ? 24.200 ? 655 100.000 3 1 2.710 2.800 ? 15157 ? 0.677 6.5 0.677 ? 24.400 ? 622 100.000 4 1 2.800 2.890 ? 14774 ? 0.454 9.0 0.454 ? 24.300 ? 608 100.000 5 1 2.890 2.990 ? 14302 ? 0.345 10.8 0.345 ? 24.200 ? 590 100.000 6 1 2.990 3.100 ? 13458 ? 0.284 12.8 0.284 ? 24.200 ? 555 100.000 7 1 3.100 3.230 ? 13203 ? 0.221 16.3 0.221 ? 24.300 ? 543 100.000 8 1 3.230 3.370 ? 12710 ? 0.188 19.8 0.188 ? 24.200 ? 526 100.000 9 1 3.370 3.540 ? 12008 ? 0.151 22.2 0.151 ? 24.100 ? 499 100.000 10 1 3.540 3.730 ? 11624 ? 0.133 24.6 0.133 ? 24.200 ? 481 100.000 11 1 3.730 3.950 ? 10920 ? 0.114 26.1 0.114 ? 23.900 ? 457 100.000 12 1 3.950 4.230 ? 10260 ? 0.113 27.9 0.113 ? 24.000 ? 428 100.000 13 1 4.230 4.570 ? 9540 ? 0.099 31.0 0.099 ? 23.900 ? 399 100.000 14 1 4.570 5.000 ? 8793 ? 0.116 31.3 0.116 ? 23.600 ? 373 100.000 15 1 5.000 5.590 ? 7858 ? 0.124 30.0 0.124 ? 23.600 ? 333 100.000 16 1 5.590 6.460 ? 6904 ? 0.114 29.7 0.114 ? 23.300 ? 296 100.000 17 1 6.460 7.910 ? 6040 ? 0.105 30.7 0.105 ? 23.000 ? 263 100.000 18 1 7.910 11.180 ? 4577 ? 0.088 34.5 0.088 ? 22.500 ? 203 100.000 19 1 11.180 29.058 ? 2303 ? 0.089 31.4 0.089 ? 20.200 ? 114 94.200 20 1 # _refine.entry_id 3UCH _refine.ls_d_res_high 2.5000 _refine.ls_d_res_low 29.058 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 100.0000 _refine.ls_number_reflns_obs 9184 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1912 _refine.ls_R_factor_R_work 0.1901 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2142 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 437 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 59.8690 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc 0.9520 _refine.correlation_coeff_Fo_to_Fc_free 0.9390 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.2160 _refine.overall_SU_ML 0.1690 _refine.overall_SU_B 14.6170 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 110.330 _refine.B_iso_min 38.200 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1326 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 49 _refine_hist.number_atoms_total 1375 _refine_hist.d_res_high 2.5000 _refine_hist.d_res_low 29.058 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1361 0.016 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 948 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1831 1.510 1.951 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2316 0.864 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 174 6.598 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 63 32.570 24.921 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 238 15.075 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 12.347 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 191 0.090 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1542 0.005 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 271 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 854 0.651 1.500 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 360 0.118 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1368 1.256 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 507 1.946 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 462 3.213 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.5020 _refine_ls_shell.d_res_low 2.5670 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 649 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2810 _refine_ls_shell.R_factor_R_free 0.3390 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 680 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a peptidyl-prolyl cis-trans isomerase E (PPIE) from Homo sapiens at 2.50 A resolution' _struct.entry_id 3UCH _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.text ;Cyclophilin-like, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, Partnership for T-Cell Biology, TCELL, ISOMERASE ; _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.entry_id 3UCH # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;ANALYTICAL SIZE EXCLUSION CHROMATOGRPAHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. HOWEVER, CRYSTAL PACKING ANALYSIS SUGGESTS THAT THE PROTEIN HAS ASSOCIATED INTO TRIMERS THAT ARE PREDICTED TO BE STABLE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 38 ? HIS A 51 ? VAL A 165 HIS A 178 1 ? 14 HELX_P HELX_P2 2 THR A 128 ? ASP A 132 ? THR A 255 ASP A 259 5 ? 5 HELX_P HELX_P3 3 GLY A 144 ? ALA A 153 ? GLY A 271 ALA A 280 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TYR 16 C ? ? ? 1_555 A MSE 17 N ? ? A TYR 143 A MSE 144 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A MSE 17 C ? ? ? 1_555 A ASP 18 N ? ? A MSE 144 A ASP 145 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A GLN 30 C ? ? ? 1_555 A MSE 31 N ? ? A GLN 157 A MSE 158 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale4 covale both ? A MSE 31 C ? ? ? 1_555 A LEU 32 N ? ? A MSE 158 A LEU 159 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? A PRO 39 C ? ? ? 1_555 A MSE 40 N ? ? A PRO 166 A MSE 167 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale both ? A MSE 40 C ? ? ? 1_555 A THR 41 N ? ? A MSE 167 A THR 168 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale7 covale both ? A PHE 69 C ? ? ? 1_555 A MSE 70 N ? ? A PHE 196 A MSE 197 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale8 covale both ? A MSE 70 C ? ? ? 1_555 A CYS 71 N ? ? A MSE 197 A CYS 198 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale9 covale both ? A SER 108 C ? ? ? 1_555 A MSE 109 N ? ? A SER 235 A MSE 236 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale10 covale both ? A MSE 109 C ? ? ? 1_555 A ALA 110 N ? ? A MSE 236 A ALA 237 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 62 ? ILE A 66 ? PHE A 189 ILE A 193 A 2 MSE A 70 ? GLY A 73 ? MSE A 197 GLY A 200 A 3 PHE A 121 ? THR A 124 ? PHE A 248 THR A 251 A 4 LEU A 106 ? MSE A 109 ? LEU A 233 MSE A 236 A 5 VAL A 137 ? GLU A 143 ? VAL A 264 GLU A 270 A 6 LYS A 24 ? LEU A 33 ? LYS A 151 LEU A 160 A 7 GLN A 14 ? ILE A 21 ? GLN A 141 ILE A 148 A 8 VAL A 165 ? GLU A 172 ? VAL A 292 GLU A 299 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 64 ? N ARG A 191 O GLN A 72 ? O GLN A 199 A 2 3 N GLY A 73 ? N GLY A 200 O PHE A 121 ? O PHE A 248 A 3 4 O PHE A 122 ? O PHE A 249 N SER A 108 ? N SER A 235 A 4 5 N LEU A 107 ? N LEU A 234 O PHE A 138 ? O PHE A 265 A 5 6 O GLU A 140 ? O GLU A 267 N LEU A 32 ? N LEU A 159 A 6 7 O GLY A 27 ? O GLY A 154 N ILE A 19 ? N ILE A 146 A 7 8 N ASP A 18 ? N ASP A 145 O ASP A 169 ? O ASP A 296 # _atom_sites.entry_id 3UCH _atom_sites.fract_transf_matrix[1][1] 0.008604 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008604 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008604 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLY 2 129 129 GLY GLY A . n A 1 3 GLU 3 130 130 GLU GLU A . n A 1 4 PRO 4 131 131 PRO PRO A . n A 1 5 ILE 5 132 132 ILE ILE A . n A 1 6 ALA 6 133 133 ALA ALA A . n A 1 7 LYS 7 134 134 LYS LYS A . n A 1 8 LYS 8 135 135 LYS LYS A . n A 1 9 ALA 9 136 136 ALA ALA A . n A 1 10 ARG 10 137 137 ARG ARG A . n A 1 11 SER 11 138 138 SER SER A . n A 1 12 ASN 12 139 139 ASN ASN A . n A 1 13 PRO 13 140 140 PRO PRO A . n A 1 14 GLN 14 141 141 GLN GLN A . n A 1 15 VAL 15 142 142 VAL VAL A . n A 1 16 TYR 16 143 143 TYR TYR A . n A 1 17 MSE 17 144 144 MSE MSE A . n A 1 18 ASP 18 145 145 ASP ASP A . n A 1 19 ILE 19 146 146 ILE ILE A . n A 1 20 LYS 20 147 147 LYS LYS A . n A 1 21 ILE 21 148 148 ILE ILE A . n A 1 22 GLY 22 149 149 GLY GLY A . n A 1 23 ASN 23 150 150 ASN ASN A . n A 1 24 LYS 24 151 151 LYS LYS A . n A 1 25 PRO 25 152 152 PRO PRO A . n A 1 26 ALA 26 153 153 ALA ALA A . n A 1 27 GLY 27 154 154 GLY GLY A . n A 1 28 ARG 28 155 155 ARG ARG A . n A 1 29 ILE 29 156 156 ILE ILE A . n A 1 30 GLN 30 157 157 GLN GLN A . n A 1 31 MSE 31 158 158 MSE MSE A . n A 1 32 LEU 32 159 159 LEU LEU A . n A 1 33 LEU 33 160 160 LEU LEU A . n A 1 34 ARG 34 161 161 ARG ARG A . n A 1 35 SER 35 162 162 SER SER A . n A 1 36 ASP 36 163 163 ASP ASP A . n A 1 37 VAL 37 164 164 VAL VAL A . n A 1 38 VAL 38 165 165 VAL VAL A . n A 1 39 PRO 39 166 166 PRO PRO A . n A 1 40 MSE 40 167 167 MSE MSE A . n A 1 41 THR 41 168 168 THR THR A . n A 1 42 ALA 42 169 169 ALA ALA A . n A 1 43 GLU 43 170 170 GLU GLU A . n A 1 44 ASN 44 171 171 ASN ASN A . n A 1 45 PHE 45 172 172 PHE PHE A . n A 1 46 ARG 46 173 173 ARG ARG A . n A 1 47 CYS 47 174 174 CYS CYS A . n A 1 48 LEU 48 175 175 LEU LEU A . n A 1 49 CYS 49 176 176 CYS CYS A . n A 1 50 THR 50 177 177 THR THR A . n A 1 51 HIS 51 178 178 HIS HIS A . n A 1 52 GLU 52 179 179 GLU GLU A . n A 1 53 LYS 53 180 180 LYS LYS A . n A 1 54 GLY 54 181 181 GLY GLY A . n A 1 55 PHE 55 182 182 PHE PHE A . n A 1 56 GLY 56 183 183 GLY GLY A . n A 1 57 PHE 57 184 184 PHE PHE A . n A 1 58 LYS 58 185 185 LYS LYS A . n A 1 59 GLY 59 186 186 GLY GLY A . n A 1 60 SER 60 187 187 SER SER A . n A 1 61 SER 61 188 188 SER SER A . n A 1 62 PHE 62 189 189 PHE PHE A . n A 1 63 HIS 63 190 190 HIS HIS A . n A 1 64 ARG 64 191 191 ARG ARG A . n A 1 65 ILE 65 192 192 ILE ILE A . n A 1 66 ILE 66 193 193 ILE ILE A . n A 1 67 PRO 67 194 194 PRO PRO A . n A 1 68 GLN 68 195 195 GLN GLN A . n A 1 69 PHE 69 196 196 PHE PHE A . n A 1 70 MSE 70 197 197 MSE MSE A . n A 1 71 CYS 71 198 198 CYS CYS A . n A 1 72 GLN 72 199 199 GLN GLN A . n A 1 73 GLY 73 200 200 GLY GLY A . n A 1 74 GLY 74 201 201 GLY GLY A . n A 1 75 ASP 75 202 202 ASP ASP A . n A 1 76 PHE 76 203 203 PHE PHE A . n A 1 77 THR 77 204 204 THR THR A . n A 1 78 ASN 78 205 205 ASN ASN A . n A 1 79 HIS 79 206 206 HIS HIS A . n A 1 80 ASN 80 207 207 ASN ASN A . n A 1 81 GLY 81 208 208 GLY GLY A . n A 1 82 THR 82 209 209 THR THR A . n A 1 83 GLY 83 210 210 GLY GLY A . n A 1 84 GLY 84 211 211 GLY GLY A . n A 1 85 LYS 85 212 212 LYS LYS A . n A 1 86 SER 86 213 213 SER SER A . n A 1 87 ILE 87 214 214 ILE ILE A . n A 1 88 TYR 88 215 215 TYR TYR A . n A 1 89 GLY 89 216 216 GLY GLY A . n A 1 90 LYS 90 217 217 LYS LYS A . n A 1 91 LYS 91 218 218 LYS LYS A . n A 1 92 PHE 92 219 219 PHE PHE A . n A 1 93 ASP 93 220 220 ASP ASP A . n A 1 94 ASP 94 221 221 ASP ASP A . n A 1 95 GLU 95 222 222 GLU GLU A . n A 1 96 ASN 96 223 223 ASN ASN A . n A 1 97 PHE 97 224 224 PHE PHE A . n A 1 98 ILE 98 225 225 ILE ILE A . n A 1 99 LEU 99 226 226 LEU LEU A . n A 1 100 LYS 100 227 227 LYS LYS A . n A 1 101 HIS 101 228 228 HIS HIS A . n A 1 102 THR 102 229 229 THR THR A . n A 1 103 GLY 103 230 230 GLY GLY A . n A 1 104 PRO 104 231 231 PRO PRO A . n A 1 105 GLY 105 232 232 GLY GLY A . n A 1 106 LEU 106 233 233 LEU LEU A . n A 1 107 LEU 107 234 234 LEU LEU A . n A 1 108 SER 108 235 235 SER SER A . n A 1 109 MSE 109 236 236 MSE MSE A . n A 1 110 ALA 110 237 237 ALA ALA A . n A 1 111 ASN 111 238 238 ASN ASN A . n A 1 112 SER 112 239 239 SER SER A . n A 1 113 GLY 113 240 240 GLY GLY A . n A 1 114 PRO 114 241 241 PRO PRO A . n A 1 115 ASN 115 242 242 ASN ASN A . n A 1 116 THR 116 243 243 THR THR A . n A 1 117 ASN 117 244 244 ASN ASN A . n A 1 118 GLY 118 245 245 GLY GLY A . n A 1 119 SER 119 246 246 SER SER A . n A 1 120 GLN 120 247 247 GLN GLN A . n A 1 121 PHE 121 248 248 PHE PHE A . n A 1 122 PHE 122 249 249 PHE PHE A . n A 1 123 LEU 123 250 250 LEU LEU A . n A 1 124 THR 124 251 251 THR THR A . n A 1 125 CYS 125 252 252 CYS CYS A . n A 1 126 ASP 126 253 253 ASP ASP A . n A 1 127 LYS 127 254 254 LYS LYS A . n A 1 128 THR 128 255 255 THR THR A . n A 1 129 ASP 129 256 256 ASP ASP A . n A 1 130 TRP 130 257 257 TRP TRP A . n A 1 131 LEU 131 258 258 LEU LEU A . n A 1 132 ASP 132 259 259 ASP ASP A . n A 1 133 GLY 133 260 260 GLY GLY A . n A 1 134 LYS 134 261 261 LYS LYS A . n A 1 135 HIS 135 262 262 HIS HIS A . n A 1 136 VAL 136 263 263 VAL VAL A . n A 1 137 VAL 137 264 264 VAL VAL A . n A 1 138 PHE 138 265 265 PHE PHE A . n A 1 139 GLY 139 266 266 GLY GLY A . n A 1 140 GLU 140 267 267 GLU GLU A . n A 1 141 VAL 141 268 268 VAL VAL A . n A 1 142 THR 142 269 269 THR THR A . n A 1 143 GLU 143 270 270 GLU GLU A . n A 1 144 GLY 144 271 271 GLY GLY A . n A 1 145 LEU 145 272 272 LEU LEU A . n A 1 146 ASP 146 273 273 ASP ASP A . n A 1 147 VAL 147 274 274 VAL VAL A . n A 1 148 LEU 148 275 275 LEU LEU A . n A 1 149 ARG 149 276 276 ARG ARG A . n A 1 150 GLN 150 277 277 GLN GLN A . n A 1 151 ILE 151 278 278 ILE ILE A . n A 1 152 GLU 152 279 279 GLU GLU A . n A 1 153 ALA 153 280 280 ALA ALA A . n A 1 154 GLN 154 281 281 GLN GLN A . n A 1 155 GLY 155 282 282 GLY GLY A . n A 1 156 SER 156 283 283 SER SER A . n A 1 157 LYS 157 284 284 LYS LYS A . n A 1 158 ASP 158 285 285 ASP ASP A . n A 1 159 GLY 159 286 286 GLY GLY A . n A 1 160 LYS 160 287 287 LYS LYS A . n A 1 161 PRO 161 288 288 PRO PRO A . n A 1 162 LYS 162 289 289 LYS LYS A . n A 1 163 GLN 163 290 290 GLN GLN A . n A 1 164 LYS 164 291 291 LYS LYS A . n A 1 165 VAL 165 292 292 VAL VAL A . n A 1 166 ILE 166 293 293 ILE ILE A . n A 1 167 ILE 167 294 294 ILE ILE A . n A 1 168 ALA 168 295 295 ALA ALA A . n A 1 169 ASP 169 296 296 ASP ASP A . n A 1 170 CYS 170 297 297 CYS CYS A . n A 1 171 GLY 171 298 298 GLY GLY A . n A 1 172 GLU 172 299 299 GLU GLU A . n A 1 173 TYR 173 300 300 TYR TYR A . n A 1 174 VAL 174 301 301 VAL VAL A . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for T-Cell Biology' 2 TCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 400 400 HOH HOH A . B 2 HOH 2 401 401 HOH HOH A . B 2 HOH 3 402 402 HOH HOH A . B 2 HOH 4 403 403 HOH HOH A . B 2 HOH 5 404 404 HOH HOH A . B 2 HOH 6 405 405 HOH HOH A . B 2 HOH 7 406 406 HOH HOH A . B 2 HOH 8 407 407 HOH HOH A . B 2 HOH 9 408 408 HOH HOH A . B 2 HOH 10 409 409 HOH HOH A . B 2 HOH 11 410 410 HOH HOH A . B 2 HOH 12 411 411 HOH HOH A . B 2 HOH 13 412 412 HOH HOH A . B 2 HOH 14 413 413 HOH HOH A . B 2 HOH 15 414 414 HOH HOH A . B 2 HOH 16 415 415 HOH HOH A . B 2 HOH 17 416 416 HOH HOH A . B 2 HOH 18 417 417 HOH HOH A . B 2 HOH 19 418 418 HOH HOH A . B 2 HOH 20 419 419 HOH HOH A . B 2 HOH 21 420 420 HOH HOH A . B 2 HOH 22 421 421 HOH HOH A . B 2 HOH 23 422 422 HOH HOH A . B 2 HOH 24 423 423 HOH HOH A . B 2 HOH 25 424 424 HOH HOH A . B 2 HOH 26 425 425 HOH HOH A . B 2 HOH 27 426 426 HOH HOH A . B 2 HOH 28 427 427 HOH HOH A . B 2 HOH 29 428 428 HOH HOH A . B 2 HOH 30 429 429 HOH HOH A . B 2 HOH 31 430 430 HOH HOH A . B 2 HOH 32 431 431 HOH HOH A . B 2 HOH 33 432 432 HOH HOH A . B 2 HOH 34 433 433 HOH HOH A . B 2 HOH 35 434 434 HOH HOH A . B 2 HOH 36 435 435 HOH HOH A . B 2 HOH 37 436 436 HOH HOH A . B 2 HOH 38 437 437 HOH HOH A . B 2 HOH 39 438 438 HOH HOH A . B 2 HOH 40 439 439 HOH HOH A . B 2 HOH 41 440 440 HOH HOH A . B 2 HOH 42 441 441 HOH HOH A . B 2 HOH 43 442 442 HOH HOH A . B 2 HOH 44 443 443 HOH HOH A . B 2 HOH 45 444 444 HOH HOH A . B 2 HOH 46 445 445 HOH HOH A . B 2 HOH 47 446 446 HOH HOH A . B 2 HOH 48 447 447 HOH HOH A . B 2 HOH 49 448 448 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 17 A MSE 144 ? MET SELENOMETHIONINE 2 A MSE 31 A MSE 158 ? MET SELENOMETHIONINE 3 A MSE 40 A MSE 167 ? MET SELENOMETHIONINE 4 A MSE 70 A MSE 197 ? MET SELENOMETHIONINE 5 A MSE 109 A MSE 236 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2,3 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3890 ? 2 MORE -14 ? 2 'SSA (A^2)' 21650 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_564 -z+1/2,-x+1,y-1/2 0.0000000000 0.0000000000 -1.0000000000 58.1160000000 -1.0000000000 0.0000000000 0.0000000000 116.2320000000 0.0000000000 1.0000000000 0.0000000000 -58.1160000000 3 'crystal symmetry operation' 10_655 -y+1,z+1/2,-x+1/2 0.0000000000 -1.0000000000 0.0000000000 116.2320000000 0.0000000000 0.0000000000 1.0000000000 58.1160000000 -1.0000000000 0.0000000000 0.0000000000 58.1160000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-16 2 'Structure model' 1 1 2012-08-29 3 'Structure model' 1 2 2014-12-24 4 'Structure model' 1 3 2017-10-25 5 'Structure model' 1 4 2018-01-24 6 'Structure model' 1 5 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_struct_assembly_auth_evidence 2 4 'Structure model' software 3 5 'Structure model' citation_author 4 6 'Structure model' database_2 5 6 'Structure model' struct_conn 6 6 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_citation_author.name' 4 6 'Structure model' '_database_2.pdbx_DOI' 5 6 'Structure model' '_database_2.pdbx_database_accession' 6 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 6 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 49.5850 _pdbx_refine_tls.origin_y 46.0260 _pdbx_refine_tls.origin_z 17.4370 _pdbx_refine_tls.T[1][1] 0.2353 _pdbx_refine_tls.T[2][2] 0.1617 _pdbx_refine_tls.T[3][3] 0.3707 _pdbx_refine_tls.T[1][2] 0.1036 _pdbx_refine_tls.T[1][3] -0.0535 _pdbx_refine_tls.T[2][3] 0.0220 _pdbx_refine_tls.L[1][1] 2.5346 _pdbx_refine_tls.L[2][2] 2.9722 _pdbx_refine_tls.L[3][3] 2.0849 _pdbx_refine_tls.L[1][2] 0.5213 _pdbx_refine_tls.L[1][3] 0.5308 _pdbx_refine_tls.L[2][3] -0.3649 _pdbx_refine_tls.S[1][1] 0.1602 _pdbx_refine_tls.S[2][2] -0.0794 _pdbx_refine_tls.S[3][3] -0.0808 _pdbx_refine_tls.S[1][2] 0.3125 _pdbx_refine_tls.S[1][3] -0.2949 _pdbx_refine_tls.S[2][3] 0.1046 _pdbx_refine_tls.S[2][1] -0.2731 _pdbx_refine_tls.S[3][1] 0.4224 _pdbx_refine_tls.S[3][2] 0.3861 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 129 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 301 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 SCALA 3.3.15 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 REFMAC 5.5.0110 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 3UCH _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 129-301 OF THE TARGET SEQUENCE. THE SEQUENCE NUMBERING CORRESPONDS TO ISOFORM A (UNIPROTKB ID Q9UNP9-1) ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 150 ? ? -153.35 70.43 2 1 PHE A 196 ? ? -129.28 -79.09 3 1 THR A 255 ? ? -105.78 62.74 4 1 PHE A 265 ? ? -152.01 11.69 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 217 ? CD ? A LYS 90 CD 2 1 Y 1 A LYS 217 ? CE ? A LYS 90 CE 3 1 Y 1 A LYS 217 ? NZ ? A LYS 90 NZ 4 1 Y 1 A LYS 287 ? CG ? A LYS 160 CG 5 1 Y 1 A LYS 287 ? CD ? A LYS 160 CD 6 1 Y 1 A LYS 287 ? CE ? A LYS 160 CE 7 1 Y 1 A LYS 287 ? NZ ? A LYS 160 NZ # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #