data_3UDE
#
_entry.id 3UDE
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3UDE pdb_00003ude 10.2210/pdb3ude/pdb
RCSB RCSB068613 ? ?
WWPDB D_1000068613 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 3UD5 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1A' unspecified
PDB 3UDV 'CRYSTAL STRUCTURE OF E. COLI HPPK IN COMPLEX WITH BISUBSTRATE ANALOGUE INHIBITOR J1C' unspecified
#
_pdbx_database_status.entry_id 3UDE
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2011-10-28
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Shaw, G.' 1 ?
'Shi, G.' 2 ?
'Ji, X.' 3 0000-0001-6942-1514
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary
'Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New design with improved properties.'
Bioorg.Med.Chem. 20 47 57 2012 BMECEP UK 0968-0896 1200 ? 22169600 10.1016/j.bmc.2011.11.032
1
;Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: synthesis and biochemical and crystallographic studies.
;
J.Med.Chem. 44 1364 1371 2001 JMCMAR US 0022-2623 0151 ? 11311059 ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Shi, G.' 1 ?
primary 'Shaw, G.' 2 ?
primary 'Liang, Y.H.' 3 ?
primary 'Subburaman, P.' 4 ?
primary 'Li, Y.' 5 ?
primary 'Wu, Y.' 6 ?
primary 'Yan, H.' 7 ?
primary 'Ji, X.' 8 0000-0001-6942-1514
1 'Shi, G.' 9 ?
1 'Blaszczyk, J.' 10 ?
1 'Ji, X.' 11 ?
1 'Yan, H.' 12 ?
#
_cell.length_a 52.91
_cell.length_b 70.98
_cell.length_c 36.38
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.entry_id 3UDE
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'P 21 21 2'
_symmetry.entry_id 3UDE
_symmetry.Int_Tables_number 18
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man '2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase' 17966.535 1 2.7.6.3 ? ? ?
2 non-polymer syn
"5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)methyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine"
614.723 1 ? ? ? ?
3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ?
4 water nat water 18.015 88 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
'6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, PPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_entity_poly.pdbx_seq_one_letter_code_can
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 THR n
1 2 VAL n
1 3 ALA n
1 4 TYR n
1 5 ILE n
1 6 ALA n
1 7 ILE n
1 8 GLY n
1 9 SER n
1 10 ASN n
1 11 LEU n
1 12 ALA n
1 13 SER n
1 14 PRO n
1 15 LEU n
1 16 GLU n
1 17 GLN n
1 18 VAL n
1 19 ASN n
1 20 ALA n
1 21 ALA n
1 22 LEU n
1 23 LYS n
1 24 ALA n
1 25 LEU n
1 26 GLY n
1 27 ASP n
1 28 ILE n
1 29 PRO n
1 30 GLU n
1 31 SER n
1 32 HIS n
1 33 ILE n
1 34 LEU n
1 35 THR n
1 36 VAL n
1 37 SER n
1 38 SER n
1 39 PHE n
1 40 TYR n
1 41 ARG n
1 42 THR n
1 43 PRO n
1 44 PRO n
1 45 LEU n
1 46 GLY n
1 47 PRO n
1 48 GLN n
1 49 ASP n
1 50 GLN n
1 51 PRO n
1 52 ASP n
1 53 TYR n
1 54 LEU n
1 55 ASN n
1 56 ALA n
1 57 ALA n
1 58 VAL n
1 59 ALA n
1 60 LEU n
1 61 GLU n
1 62 THR n
1 63 SER n
1 64 LEU n
1 65 ALA n
1 66 PRO n
1 67 GLU n
1 68 GLU n
1 69 LEU n
1 70 LEU n
1 71 ASN n
1 72 HIS n
1 73 THR n
1 74 GLN n
1 75 ARG n
1 76 ILE n
1 77 GLU n
1 78 LEU n
1 79 GLN n
1 80 GLN n
1 81 GLY n
1 82 ARG n
1 83 VAL n
1 84 ARG n
1 85 LYS n
1 86 ALA n
1 87 GLU n
1 88 ARG n
1 89 TRP n
1 90 GLY n
1 91 PRO n
1 92 ARG n
1 93 THR n
1 94 LEU n
1 95 ASP n
1 96 LEU n
1 97 ASP n
1 98 ILE n
1 99 MET n
1 100 LEU n
1 101 PHE n
1 102 GLY n
1 103 ASN n
1 104 GLU n
1 105 VAL n
1 106 ILE n
1 107 ASN n
1 108 THR n
1 109 GLU n
1 110 ARG n
1 111 LEU n
1 112 THR n
1 113 VAL n
1 114 PRO n
1 115 HIS n
1 116 TYR n
1 117 ASP n
1 118 MET n
1 119 LYS n
1 120 ASN n
1 121 ARG n
1 122 GLY n
1 123 PHE n
1 124 MET n
1 125 LEU n
1 126 TRP n
1 127 PRO n
1 128 LEU n
1 129 PHE n
1 130 GLU n
1 131 ILE n
1 132 ALA n
1 133 PRO n
1 134 GLU n
1 135 LEU n
1 136 VAL n
1 137 PHE n
1 138 PRO n
1 139 ASP n
1 140 GLY n
1 141 GLU n
1 142 MET n
1 143 LEU n
1 144 ARG n
1 145 GLN n
1 146 ILE n
1 147 LEU n
1 148 HIS n
1 149 THR n
1 150 ARG n
1 151 ALA n
1 152 PHE n
1 153 ASP n
1 154 LYS n
1 155 LEU n
1 156 ASN n
1 157 LYS n
1 158 TRP n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name ?
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'b0142, foIK, folK, JW0138'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain K12
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain 'BL21(DE3)'
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type plasmid
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name pET17b
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code HPPK_ECOLI
_struct_ref.pdbx_db_accession P26281
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_struct_ref.pdbx_align_begin 2
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3UDE
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 158
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P26281
_struct_ref_seq.db_align_beg 2
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 159
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 158
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
J1B non-polymer .
"5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)methyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine" ?
'C26 H38 N12 O4 S' 614.723
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.crystals_number 1
_exptl.entry_id 3UDE
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 1.90
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 35.30
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.pH 8.5
_exptl_crystal_grow.temp 292
_exptl_crystal_grow.pdbx_details 'PEG 3350, ammonium acetate, Bis-Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 292K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MARMOSAIC 225 mm CCD'
_diffrn_detector.pdbx_collection_date 2009-08-18
_diffrn_detector.details mirrors
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator GRAPHITE
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.00000
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 22-BM'
_diffrn_source.pdbx_wavelength_list 1.00000
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 22-BM
#
_reflns.entry_id 3UDE
_reflns.d_resolution_high 1.820
_reflns.d_resolution_low 30.000
_reflns.number_obs 11525
_reflns.pdbx_Rmerge_I_obs 0.084
_reflns.pdbx_netI_over_sigmaI 8.200
_reflns.pdbx_chi_squared 0.916
_reflns.pdbx_redundancy 6.100
_reflns.percent_possible_obs 89.700
_reflns.observed_criterion_sigma_F -6
_reflns.observed_criterion_sigma_I -3
_reflns.number_all 11525
_reflns.pdbx_Rsym_value ?
_reflns.B_iso_Wilson_estimate 20.0
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
1.820 1.890 ? ? ? 0.561 ? ? 0.964 2.500 ? 650 51.900 1 1
1.890 1.960 ? ? ? 0.456 ? ? 0.986 3.500 ? 900 72.000 2 1
1.960 2.050 ? ? ? 0.378 ? ? 0.969 4.700 ? 1061 84.100 3 1
2.050 2.160 ? ? ? 0.289 ? ? 0.784 5.800 ? 1184 93.300 4 1
2.160 2.290 ? ? ? 0.234 ? ? 0.920 6.500 ? 1231 96.800 5 1
2.290 2.470 ? ? ? 0.181 ? ? 1.006 7.000 ? 1242 98.600 6 1
2.470 2.720 ? ? ? 0.142 ? ? 0.889 7.200 ? 1263 99.400 7 1
2.720 3.110 ? ? ? 0.107 ? ? 1.028 7.200 ? 1292 99.200 8 1
3.110 3.920 ? ? ? 0.057 ? ? 0.907 7.100 ? 1298 99.500 9 1
3.920 30.000 ? ? ? 0.033 ? ? 0.798 6.700 ? 1404 99.500 10 1
#
_refine.entry_id 3UDE
_refine.ls_d_res_high 1.8810
_refine.ls_d_res_low 29.4730
_refine.pdbx_ls_sigma_F 1.340
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_percent_reflns_obs 93.5100
_refine.ls_number_reflns_obs 10902
_refine.ls_number_reflns_all 10902
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details Random
_refine.details ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1837
_refine.ls_R_factor_R_work 0.1784
_refine.ls_wR_factor_R_work ?
_refine.ls_R_factor_R_free 0.2370
_refine.ls_wR_factor_R_free ?
_refine.ls_percent_reflns_R_free 8.7000
_refine.ls_number_reflns_R_free 949
_refine.ls_R_factor_R_free_error ?
_refine.B_iso_mean 28.7289
_refine.solvent_model_param_bsol 47.7040
_refine.solvent_model_param_ksol 0.3840
_refine.pdbx_isotropic_thermal_model Isotropic
_refine.aniso_B[1][1] -6.7882
_refine.aniso_B[2][2] 3.3626
_refine.aniso_B[3][3] -4.7153
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][3] 0.0000
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML 0.5000
_refine.overall_SU_B ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.pdbx_starting_model 'PDB entry 3ILJ'
_refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS'
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.overall_FOM_work_R_set ?
_refine.B_iso_max 84.200
_refine.B_iso_min 9.540
_refine.pdbx_overall_phase_error 23.6100
_refine.occupancy_max 1.000
_refine.occupancy_min 0.330
_refine.pdbx_ls_sigma_I ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1235
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 47
_refine_hist.number_atoms_solvent 88
_refine_hist.number_atoms_total 1370
_refine_hist.d_res_high 1.8810
_refine_hist.d_res_low 29.4730
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
f_bond_d 1355 0.012 ? ? ? 'X-RAY DIFFRACTION'
f_angle_d 1857 1.382 ? ? ? 'X-RAY DIFFRACTION'
f_chiral_restr 203 0.076 ? ? ? 'X-RAY DIFFRACTION'
f_plane_restr 239 0.008 ? ? ? 'X-RAY DIFFRACTION'
f_dihedral_angle_d 519 14.552 ? ? ? 'X-RAY DIFFRACTION'
#
loop_
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.pdbx_refine_id
1.8810 1.9796 7 73.0000 1076 . 0.2426 0.3092 . 104 . 1180 1180 . 'X-RAY DIFFRACTION'
1.9796 2.1036 7 89.0000 1329 . 0.1918 0.2638 . 126 . 1455 1455 . 'X-RAY DIFFRACTION'
2.1036 2.2660 7 96.0000 1426 . 0.1795 0.2538 . 135 . 1561 1561 . 'X-RAY DIFFRACTION'
2.2660 2.4939 7 98.0000 1473 . 0.1724 0.2182 . 141 . 1614 1614 . 'X-RAY DIFFRACTION'
2.4939 2.8546 7 99.0000 1504 . 0.1567 0.2387 . 144 . 1648 1648 . 'X-RAY DIFFRACTION'
2.8546 3.5954 7 99.0000 1531 . 0.1613 0.2204 . 145 . 1676 1676 . 'X-RAY DIFFRACTION'
3.5954 29.4768 7 100.0000 1614 . 0.1878 0.2333 . 154 . 1768 1768 . 'X-RAY DIFFRACTION'
#
_struct.entry_id 3UDE
_struct.title 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1B'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3UDE
_struct_keywords.text
'Alpha Beta, Kinase, ATP Binding, Pyrophosphoryl Transfer, TRANSFERASE-TRANSFERASE INHIBITOR complex'
_struct_keywords.pdbx_keywords 'TRANSFERASE/TRANSFERASE INHIBITOR'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 PRO A 14 ? ASP A 27 ? PRO A 14 ASP A 27 1 ? 14
HELX_P HELX_P2 2 ALA A 65 ? GLY A 81 ? ALA A 65 GLY A 81 1 ? 17
HELX_P HELX_P3 3 ASP A 117 ? ASN A 120 ? ASP A 117 ASN A 120 5 ? 4
HELX_P HELX_P4 4 ARG A 121 ? ALA A 132 ? ARG A 121 ALA A 132 1 ? 12
HELX_P HELX_P5 5 MET A 142 ? ALA A 151 ? MET A 142 ALA A 151 1 ? 10
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 GLY 90 A . ? GLY 90 A PRO 91 A ? PRO 91 A 1 0.66
2 VAL 113 A . ? VAL 113 A PRO 114 A ? PRO 114 A 1 -0.15
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 4 ?
B ? 4 ?
C ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
C 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 SER A 31 ? VAL A 36 ? SER A 31 VAL A 36
A 2 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62
A 3 VAL A 2 ? SER A 9 ? VAL A 2 SER A 9
A 4 ASP A 95 ? PHE A 101 ? ASP A 95 PHE A 101
B 1 SER A 31 ? VAL A 36 ? SER A 31 VAL A 36
B 2 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62
B 3 TYR A 40 ? THR A 42 ? TYR A 40 THR A 42
B 4 ASN A 156 ? LYS A 157 ? ASN A 156 LYS A 157
C 1 ILE A 106 ? ASN A 107 ? ILE A 106 ASN A 107
C 2 THR A 112 ? VAL A 113 ? THR A 112 VAL A 113
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N HIS A 32 ? N HIS A 32 O GLU A 61 ? O GLU A 61
A 2 3 O LEU A 60 ? O LEU A 60 N ALA A 3 ? N ALA A 3
A 3 4 N ALA A 6 ? N ALA A 6 O ASP A 97 ? O ASP A 97
B 1 2 N HIS A 32 ? N HIS A 32 O GLU A 61 ? O GLU A 61
B 2 3 O TYR A 53 ? O TYR A 53 N THR A 42 ? N THR A 42
B 3 4 N ARG A 41 ? N ARG A 41 O ASN A 156 ? O ASN A 156
C 1 2 N ILE A 106 ? N ILE A 106 O VAL A 113 ? O VAL A 113
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A J1B 171 ? 22 'BINDING SITE FOR RESIDUE J1B A 171'
AC2 Software A ACT 191 ? 7 'BINDING SITE FOR RESIDUE ACT A 191'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 22 LYS A 23 ? LYS A 23 . ? 4_456 ?
2 AC1 22 THR A 42 ? THR A 42 . ? 1_555 ?
3 AC1 22 PRO A 43 ? PRO A 43 . ? 1_555 ?
4 AC1 22 LEU A 45 ? LEU A 45 . ? 1_555 ?
5 AC1 22 TYR A 53 ? TYR A 53 . ? 1_555 ?
6 AC1 22 ASN A 55 ? ASN A 55 . ? 1_555 ?
7 AC1 22 LEU A 70 ? LEU A 70 . ? 1_555 ?
8 AC1 22 GLN A 74 ? GLN A 74 . ? 1_555 ?
9 AC1 22 TRP A 89 ? TRP A 89 . ? 1_555 ?
10 AC1 22 GLY A 90 ? GLY A 90 . ? 1_555 ?
11 AC1 22 ASP A 95 ? ASP A 95 . ? 1_555 ?
12 AC1 22 ASP A 97 ? ASP A 97 . ? 1_555 ?
13 AC1 22 ILE A 98 ? ILE A 98 . ? 1_555 ?
14 AC1 22 ARG A 110 ? ARG A 110 . ? 1_555 ?
15 AC1 22 LEU A 111 ? LEU A 111 . ? 1_555 ?
16 AC1 22 THR A 112 ? THR A 112 . ? 1_555 ?
17 AC1 22 TYR A 116 ? TYR A 116 . ? 1_555 ?
18 AC1 22 PHE A 123 ? PHE A 123 . ? 1_555 ?
19 AC1 22 HIS A 148 ? HIS A 148 . ? 1_556 ?
20 AC1 22 ACT C . ? ACT A 191 . ? 1_555 ?
21 AC1 22 HOH D . ? HOH A 221 . ? 1_555 ?
22 AC1 22 HOH D . ? HOH A 236 . ? 1_555 ?
23 AC2 7 GLY A 8 ? GLY A 8 . ? 1_555 ?
24 AC2 7 ASN A 55 ? ASN A 55 . ? 1_555 ?
25 AC2 7 ASP A 95 ? ASP A 95 . ? 1_555 ?
26 AC2 7 ASP A 97 ? ASP A 97 . ? 1_555 ?
27 AC2 7 PHE A 123 ? PHE A 123 . ? 1_555 ?
28 AC2 7 J1B B . ? J1B A 171 . ? 1_555 ?
29 AC2 7 HOH D . ? HOH A 284 . ? 1_555 ?
#
_database_PDB_matrix.entry_id 3UDE
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.000000
_database_PDB_matrix.origx_vector[2] 0.000000
_database_PDB_matrix.origx_vector[3] 0.000000
#
_atom_sites.entry_id 3UDE
_atom_sites.fract_transf_matrix[1][1] 0.018900
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.014089
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.027491
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 THR 1 1 1 THR THR A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 ALA 3 3 3 ALA ALA A . n
A 1 4 TYR 4 4 4 TYR TYR A . n
A 1 5 ILE 5 5 5 ILE ILE A . n
A 1 6 ALA 6 6 6 ALA ALA A . n
A 1 7 ILE 7 7 7 ILE ILE A . n
A 1 8 GLY 8 8 8 GLY GLY A . n
A 1 9 SER 9 9 9 SER SER A . n
A 1 10 ASN 10 10 10 ASN ASN A . n
A 1 11 LEU 11 11 11 LEU LEU A . n
A 1 12 ALA 12 12 12 ALA ALA A . n
A 1 13 SER 13 13 13 SER SER A . n
A 1 14 PRO 14 14 14 PRO PRO A . n
A 1 15 LEU 15 15 15 LEU LEU A . n
A 1 16 GLU 16 16 16 GLU GLU A . n
A 1 17 GLN 17 17 17 GLN GLN A . n
A 1 18 VAL 18 18 18 VAL VAL A . n
A 1 19 ASN 19 19 19 ASN ASN A . n
A 1 20 ALA 20 20 20 ALA ALA A . n
A 1 21 ALA 21 21 21 ALA ALA A . n
A 1 22 LEU 22 22 22 LEU LEU A . n
A 1 23 LYS 23 23 23 LYS LYS A . n
A 1 24 ALA 24 24 24 ALA ALA A . n
A 1 25 LEU 25 25 25 LEU LEU A . n
A 1 26 GLY 26 26 26 GLY GLY A . n
A 1 27 ASP 27 27 27 ASP ASP A . n
A 1 28 ILE 28 28 28 ILE ILE A . n
A 1 29 PRO 29 29 29 PRO PRO A . n
A 1 30 GLU 30 30 30 GLU GLU A . n
A 1 31 SER 31 31 31 SER SER A . n
A 1 32 HIS 32 32 32 HIS HIS A . n
A 1 33 ILE 33 33 33 ILE ILE A . n
A 1 34 LEU 34 34 34 LEU LEU A . n
A 1 35 THR 35 35 35 THR THR A . n
A 1 36 VAL 36 36 36 VAL VAL A . n
A 1 37 SER 37 37 37 SER SER A . n
A 1 38 SER 38 38 38 SER SER A . n
A 1 39 PHE 39 39 39 PHE PHE A . n
A 1 40 TYR 40 40 40 TYR TYR A . n
A 1 41 ARG 41 41 41 ARG ARG A . n
A 1 42 THR 42 42 42 THR THR A . n
A 1 43 PRO 43 43 43 PRO PRO A . n
A 1 44 PRO 44 44 44 PRO PRO A . n
A 1 45 LEU 45 45 45 LEU LEU A . n
A 1 46 GLY 46 46 46 GLY GLY A . n
A 1 47 PRO 47 47 47 PRO PRO A . n
A 1 48 GLN 48 48 48 GLN GLN A . n
A 1 49 ASP 49 49 49 ASP ASP A . n
A 1 50 GLN 50 50 50 GLN GLN A . n
A 1 51 PRO 51 51 51 PRO PRO A . n
A 1 52 ASP 52 52 52 ASP ASP A . n
A 1 53 TYR 53 53 53 TYR TYR A . n
A 1 54 LEU 54 54 54 LEU LEU A . n
A 1 55 ASN 55 55 55 ASN ASN A . n
A 1 56 ALA 56 56 56 ALA ALA A . n
A 1 57 ALA 57 57 57 ALA ALA A . n
A 1 58 VAL 58 58 58 VAL VAL A . n
A 1 59 ALA 59 59 59 ALA ALA A . n
A 1 60 LEU 60 60 60 LEU LEU A . n
A 1 61 GLU 61 61 61 GLU GLU A . n
A 1 62 THR 62 62 62 THR THR A . n
A 1 63 SER 63 63 63 SER SER A . n
A 1 64 LEU 64 64 64 LEU LEU A . n
A 1 65 ALA 65 65 65 ALA ALA A . n
A 1 66 PRO 66 66 66 PRO PRO A . n
A 1 67 GLU 67 67 67 GLU GLU A . n
A 1 68 GLU 68 68 68 GLU GLU A . n
A 1 69 LEU 69 69 69 LEU LEU A . n
A 1 70 LEU 70 70 70 LEU LEU A . n
A 1 71 ASN 71 71 71 ASN ASN A . n
A 1 72 HIS 72 72 72 HIS HIS A . n
A 1 73 THR 73 73 73 THR THR A . n
A 1 74 GLN 74 74 74 GLN GLN A . n
A 1 75 ARG 75 75 75 ARG ARG A . n
A 1 76 ILE 76 76 76 ILE ILE A . n
A 1 77 GLU 77 77 77 GLU GLU A . n
A 1 78 LEU 78 78 78 LEU LEU A . n
A 1 79 GLN 79 79 79 GLN GLN A . n
A 1 80 GLN 80 80 80 GLN GLN A . n
A 1 81 GLY 81 81 81 GLY GLY A . n
A 1 82 ARG 82 82 82 ARG ARG A . n
A 1 83 VAL 83 83 ? ? ? A . n
A 1 84 ARG 84 84 ? ? ? A . n
A 1 85 LYS 85 85 ? ? ? A . n
A 1 86 ALA 86 86 ? ? ? A . n
A 1 87 GLU 87 87 87 GLU GLU A . n
A 1 88 ARG 88 88 88 ARG ARG A . n
A 1 89 TRP 89 89 89 TRP TRP A . n
A 1 90 GLY 90 90 90 GLY GLY A . n
A 1 91 PRO 91 91 91 PRO PRO A . n
A 1 92 ARG 92 92 92 ARG ARG A . n
A 1 93 THR 93 93 93 THR THR A . n
A 1 94 LEU 94 94 94 LEU LEU A . n
A 1 95 ASP 95 95 95 ASP ASP A . n
A 1 96 LEU 96 96 96 LEU LEU A . n
A 1 97 ASP 97 97 97 ASP ASP A . n
A 1 98 ILE 98 98 98 ILE ILE A . n
A 1 99 MET 99 99 99 MET MET A . n
A 1 100 LEU 100 100 100 LEU LEU A . n
A 1 101 PHE 101 101 101 PHE PHE A . n
A 1 102 GLY 102 102 102 GLY GLY A . n
A 1 103 ASN 103 103 103 ASN ASN A . n
A 1 104 GLU 104 104 104 GLU GLU A . n
A 1 105 VAL 105 105 105 VAL VAL A . n
A 1 106 ILE 106 106 106 ILE ILE A . n
A 1 107 ASN 107 107 107 ASN ASN A . n
A 1 108 THR 108 108 108 THR THR A . n
A 1 109 GLU 109 109 109 GLU GLU A . n
A 1 110 ARG 110 110 110 ARG ARG A . n
A 1 111 LEU 111 111 111 LEU LEU A . n
A 1 112 THR 112 112 112 THR THR A . n
A 1 113 VAL 113 113 113 VAL VAL A . n
A 1 114 PRO 114 114 114 PRO PRO A . n
A 1 115 HIS 115 115 115 HIS HIS A . n
A 1 116 TYR 116 116 116 TYR TYR A . n
A 1 117 ASP 117 117 117 ASP ASP A . n
A 1 118 MET 118 118 118 MET MET A . n
A 1 119 LYS 119 119 119 LYS LYS A . n
A 1 120 ASN 120 120 120 ASN ASN A . n
A 1 121 ARG 121 121 121 ARG ARG A . n
A 1 122 GLY 122 122 122 GLY GLY A . n
A 1 123 PHE 123 123 123 PHE PHE A . n
A 1 124 MET 124 124 124 MET MET A . n
A 1 125 LEU 125 125 125 LEU LEU A . n
A 1 126 TRP 126 126 126 TRP TRP A . n
A 1 127 PRO 127 127 127 PRO PRO A . n
A 1 128 LEU 128 128 128 LEU LEU A . n
A 1 129 PHE 129 129 129 PHE PHE A . n
A 1 130 GLU 130 130 130 GLU GLU A . n
A 1 131 ILE 131 131 131 ILE ILE A . n
A 1 132 ALA 132 132 132 ALA ALA A . n
A 1 133 PRO 133 133 133 PRO PRO A . n
A 1 134 GLU 134 134 134 GLU GLU A . n
A 1 135 LEU 135 135 135 LEU LEU A . n
A 1 136 VAL 136 136 136 VAL VAL A . n
A 1 137 PHE 137 137 137 PHE PHE A . n
A 1 138 PRO 138 138 138 PRO PRO A . n
A 1 139 ASP 139 139 139 ASP ASP A . n
A 1 140 GLY 140 140 140 GLY GLY A . n
A 1 141 GLU 141 141 141 GLU GLU A . n
A 1 142 MET 142 142 142 MET MET A . n
A 1 143 LEU 143 143 143 LEU LEU A . n
A 1 144 ARG 144 144 144 ARG ARG A . n
A 1 145 GLN 145 145 145 GLN GLN A . n
A 1 146 ILE 146 146 146 ILE ILE A . n
A 1 147 LEU 147 147 147 LEU LEU A . n
A 1 148 HIS 148 148 148 HIS HIS A . n
A 1 149 THR 149 149 149 THR THR A . n
A 1 150 ARG 150 150 150 ARG ARG A . n
A 1 151 ALA 151 151 151 ALA ALA A . n
A 1 152 PHE 152 152 152 PHE PHE A . n
A 1 153 ASP 153 153 153 ASP ASP A . n
A 1 154 LYS 154 154 154 LYS LYS A . n
A 1 155 LEU 155 155 155 LEU LEU A . n
A 1 156 ASN 156 156 156 ASN ASN A . n
A 1 157 LYS 157 157 157 LYS LYS A . n
A 1 158 TRP 158 158 158 TRP TRP A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 J1B 1 171 171 J1B J1B A .
C 3 ACT 1 191 191 ACT ACT A .
D 4 HOH 1 201 201 HOH HOH A .
D 4 HOH 2 202 202 HOH HOH A .
D 4 HOH 3 203 203 HOH HOH A .
D 4 HOH 4 204 204 HOH HOH A .
D 4 HOH 5 205 205 HOH HOH A .
D 4 HOH 6 206 206 HOH HOH A .
D 4 HOH 7 207 207 HOH HOH A .
D 4 HOH 8 208 208 HOH HOH A .
D 4 HOH 9 209 209 HOH HOH A .
D 4 HOH 10 210 210 HOH HOH A .
D 4 HOH 11 211 211 HOH HOH A .
D 4 HOH 12 212 212 HOH HOH A .
D 4 HOH 13 213 213 HOH HOH A .
D 4 HOH 14 214 214 HOH HOH A .
D 4 HOH 15 215 215 HOH HOH A .
D 4 HOH 16 216 216 HOH HOH A .
D 4 HOH 17 217 217 HOH HOH A .
D 4 HOH 18 218 218 HOH HOH A .
D 4 HOH 19 219 219 HOH HOH A .
D 4 HOH 20 220 220 HOH HOH A .
D 4 HOH 21 221 221 HOH HOH A .
D 4 HOH 22 222 222 HOH HOH A .
D 4 HOH 23 223 223 HOH HOH A .
D 4 HOH 24 224 224 HOH HOH A .
D 4 HOH 25 225 225 HOH HOH A .
D 4 HOH 26 226 226 HOH HOH A .
D 4 HOH 27 227 227 HOH HOH A .
D 4 HOH 28 228 228 HOH HOH A .
D 4 HOH 29 229 229 HOH HOH A .
D 4 HOH 30 230 230 HOH HOH A .
D 4 HOH 31 231 231 HOH HOH A .
D 4 HOH 32 232 232 HOH HOH A .
D 4 HOH 33 233 233 HOH HOH A .
D 4 HOH 34 234 234 HOH HOH A .
D 4 HOH 35 235 235 HOH HOH A .
D 4 HOH 36 236 236 HOH HOH A .
D 4 HOH 37 237 237 HOH HOH A .
D 4 HOH 38 238 238 HOH HOH A .
D 4 HOH 39 239 239 HOH HOH A .
D 4 HOH 40 240 240 HOH HOH A .
D 4 HOH 41 241 241 HOH HOH A .
D 4 HOH 42 242 242 HOH HOH A .
D 4 HOH 43 243 243 HOH HOH A .
D 4 HOH 44 244 244 HOH HOH A .
D 4 HOH 45 245 245 HOH HOH A .
D 4 HOH 46 246 246 HOH HOH A .
D 4 HOH 47 247 247 HOH HOH A .
D 4 HOH 48 248 248 HOH HOH A .
D 4 HOH 49 249 249 HOH HOH A .
D 4 HOH 50 250 250 HOH HOH A .
D 4 HOH 51 251 251 HOH HOH A .
D 4 HOH 52 252 252 HOH HOH A .
D 4 HOH 53 253 253 HOH HOH A .
D 4 HOH 54 254 254 HOH HOH A .
D 4 HOH 55 255 255 HOH HOH A .
D 4 HOH 56 256 256 HOH HOH A .
D 4 HOH 57 257 257 HOH HOH A .
D 4 HOH 58 258 258 HOH HOH A .
D 4 HOH 59 259 259 HOH HOH A .
D 4 HOH 60 260 260 HOH HOH A .
D 4 HOH 61 261 261 HOH HOH A .
D 4 HOH 62 262 262 HOH HOH A .
D 4 HOH 63 263 263 HOH HOH A .
D 4 HOH 64 264 264 HOH HOH A .
D 4 HOH 65 265 265 HOH HOH A .
D 4 HOH 66 266 266 HOH HOH A .
D 4 HOH 67 267 267 HOH HOH A .
D 4 HOH 68 268 268 HOH HOH A .
D 4 HOH 69 269 269 HOH HOH A .
D 4 HOH 70 270 270 HOH HOH A .
D 4 HOH 71 271 271 HOH HOH A .
D 4 HOH 72 272 272 HOH HOH A .
D 4 HOH 73 273 273 HOH HOH A .
D 4 HOH 74 274 274 HOH HOH A .
D 4 HOH 75 275 275 HOH HOH A .
D 4 HOH 76 276 276 HOH HOH A .
D 4 HOH 77 277 277 HOH HOH A .
D 4 HOH 78 278 278 HOH HOH A .
D 4 HOH 79 279 279 HOH HOH A .
D 4 HOH 80 280 280 HOH HOH A .
D 4 HOH 81 281 281 HOH HOH A .
D 4 HOH 82 282 282 HOH HOH A .
D 4 HOH 83 283 283 HOH HOH A .
D 4 HOH 84 284 284 HOH HOH A .
D 4 HOH 85 285 285 HOH HOH A .
D 4 HOH 86 286 286 HOH HOH A .
D 4 HOH 87 287 287 HOH HOH A .
D 4 HOH 88 288 288 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2012-01-04
2 'Structure model' 1 1 2012-01-18
3 'Structure model' 1 2 2023-08-30
4 'Structure model' 1 3 2023-09-13
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
5 3 'Structure model' 'Structure summary'
6 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' audit_author
2 3 'Structure model' chem_comp_atom
3 3 'Structure model' chem_comp_bond
4 3 'Structure model' citation_author
5 3 'Structure model' database_2
6 3 'Structure model' struct_site
7 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_audit_author.identifier_ORCID'
2 3 'Structure model' '_citation_author.identifier_ORCID'
3 3 'Structure model' '_database_2.pdbx_DOI'
4 3 'Structure model' '_database_2.pdbx_database_accession'
5 3 'Structure model' '_struct_site.pdbx_auth_asym_id'
6 3 'Structure model' '_struct_site.pdbx_auth_comp_id'
7 3 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling'
http://www.hkl-xray.com/ ? ?
2 PHENIX 1.7.2_869 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement
http://www.phenix-online.org/ C++ ?
3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
4 MAR345dtb . ? ? ? ? 'data collection' ? ? ?
5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ?
6 PHENIX . ? ? ? ? phasing ? ? ?
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 GLN A 48 ? ? -68.16 4.29
2 1 ASP A 49 ? ? -111.06 51.37
3 1 LEU A 94 ? ? -162.94 117.93
4 1 ALA A 132 ? ? -151.04 58.25
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A VAL 83 ? A VAL 83
2 1 Y 1 A ARG 84 ? A ARG 84
3 1 Y 1 A LYS 85 ? A LYS 85
4 1 Y 1 A ALA 86 ? A ALA 86
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ACT C C N N 1
ACT O O N N 2
ACT OXT O N N 3
ACT CH3 C N N 4
ACT H1 H N N 5
ACT H2 H N N 6
ACT H3 H N N 7
ALA N N N N 8
ALA CA C N S 9
ALA C C N N 10
ALA O O N N 11
ALA CB C N N 12
ALA OXT O N N 13
ALA H H N N 14
ALA H2 H N N 15
ALA HA H N N 16
ALA HB1 H N N 17
ALA HB2 H N N 18
ALA HB3 H N N 19
ALA HXT H N N 20
ARG N N N N 21
ARG CA C N S 22
ARG C C N N 23
ARG O O N N 24
ARG CB C N N 25
ARG CG C N N 26
ARG CD C N N 27
ARG NE N N N 28
ARG CZ C N N 29
ARG NH1 N N N 30
ARG NH2 N N N 31
ARG OXT O N N 32
ARG H H N N 33
ARG H2 H N N 34
ARG HA H N N 35
ARG HB2 H N N 36
ARG HB3 H N N 37
ARG HG2 H N N 38
ARG HG3 H N N 39
ARG HD2 H N N 40
ARG HD3 H N N 41
ARG HE H N N 42
ARG HH11 H N N 43
ARG HH12 H N N 44
ARG HH21 H N N 45
ARG HH22 H N N 46
ARG HXT H N N 47
ASN N N N N 48
ASN CA C N S 49
ASN C C N N 50
ASN O O N N 51
ASN CB C N N 52
ASN CG C N N 53
ASN OD1 O N N 54
ASN ND2 N N N 55
ASN OXT O N N 56
ASN H H N N 57
ASN H2 H N N 58
ASN HA H N N 59
ASN HB2 H N N 60
ASN HB3 H N N 61
ASN HD21 H N N 62
ASN HD22 H N N 63
ASN HXT H N N 64
ASP N N N N 65
ASP CA C N S 66
ASP C C N N 67
ASP O O N N 68
ASP CB C N N 69
ASP CG C N N 70
ASP OD1 O N N 71
ASP OD2 O N N 72
ASP OXT O N N 73
ASP H H N N 74
ASP H2 H N N 75
ASP HA H N N 76
ASP HB2 H N N 77
ASP HB3 H N N 78
ASP HD2 H N N 79
ASP HXT H N N 80
GLN N N N N 81
GLN CA C N S 82
GLN C C N N 83
GLN O O N N 84
GLN CB C N N 85
GLN CG C N N 86
GLN CD C N N 87
GLN OE1 O N N 88
GLN NE2 N N N 89
GLN OXT O N N 90
GLN H H N N 91
GLN H2 H N N 92
GLN HA H N N 93
GLN HB2 H N N 94
GLN HB3 H N N 95
GLN HG2 H N N 96
GLN HG3 H N N 97
GLN HE21 H N N 98
GLN HE22 H N N 99
GLN HXT H N N 100
GLU N N N N 101
GLU CA C N S 102
GLU C C N N 103
GLU O O N N 104
GLU CB C N N 105
GLU CG C N N 106
GLU CD C N N 107
GLU OE1 O N N 108
GLU OE2 O N N 109
GLU OXT O N N 110
GLU H H N N 111
GLU H2 H N N 112
GLU HA H N N 113
GLU HB2 H N N 114
GLU HB3 H N N 115
GLU HG2 H N N 116
GLU HG3 H N N 117
GLU HE2 H N N 118
GLU HXT H N N 119
GLY N N N N 120
GLY CA C N N 121
GLY C C N N 122
GLY O O N N 123
GLY OXT O N N 124
GLY H H N N 125
GLY H2 H N N 126
GLY HA2 H N N 127
GLY HA3 H N N 128
GLY HXT H N N 129
HIS N N N N 130
HIS CA C N S 131
HIS C C N N 132
HIS O O N N 133
HIS CB C N N 134
HIS CG C Y N 135
HIS ND1 N Y N 136
HIS CD2 C Y N 137
HIS CE1 C Y N 138
HIS NE2 N Y N 139
HIS OXT O N N 140
HIS H H N N 141
HIS H2 H N N 142
HIS HA H N N 143
HIS HB2 H N N 144
HIS HB3 H N N 145
HIS HD1 H N N 146
HIS HD2 H N N 147
HIS HE1 H N N 148
HIS HE2 H N N 149
HIS HXT H N N 150
HOH O O N N 151
HOH H1 H N N 152
HOH H2 H N N 153
ILE N N N N 154
ILE CA C N S 155
ILE C C N N 156
ILE O O N N 157
ILE CB C N S 158
ILE CG1 C N N 159
ILE CG2 C N N 160
ILE CD1 C N N 161
ILE OXT O N N 162
ILE H H N N 163
ILE H2 H N N 164
ILE HA H N N 165
ILE HB H N N 166
ILE HG12 H N N 167
ILE HG13 H N N 168
ILE HG21 H N N 169
ILE HG22 H N N 170
ILE HG23 H N N 171
ILE HD11 H N N 172
ILE HD12 H N N 173
ILE HD13 H N N 174
ILE HXT H N N 175
J1B C1 C N S 176
J1B N1 N Y N 177
J1B O1 O N N 178
J1B S1 S N N 179
J1B C2 C N S 180
J1B N2 N Y N 181
J1B O2 O N N 182
J1B C3 C N R 183
J1B N3 N N N 184
J1B O3 O N N 185
J1B C4 C N R 186
J1B N4 N Y N 187
J1B C5 C Y N 188
J1B N5 N Y N 189
J1B O5 O N N 190
J1B C6 C Y N 191
J1B N6 N N N 192
J1B C7 C Y N 193
J1B C8 C Y N 194
J1B N8 N N N 195
J1B C9 C Y N 196
J1B N9 N N N 197
J1B C10 C N N 198
J1B N10 N N N 199
J1B C11 C N N 200
J1B N11 N N N 201
J1B C12 C N N 202
J1B N12 N N N 203
J1B C13 C N N 204
J1B C14 C N N 205
J1B C15 C N N 206
J1B C16 C N N 207
J1B C18 C N N 208
J1B C19 C N N 209
J1B C20 C N N 210
J1B C21 C N N 211
J1B C22 C N N 212
J1B C23 C N N 213
J1B C24 C N N 214
J1B C25 C N N 215
J1B C26 C N N 216
J1B C27 C N N 217
J1B N28 N N N 218
J1B H1 H N N 219
J1B H2 H N N 220
J1B HO2 H N N 221
J1B H3 H N N 222
J1B HN3 H N N 223
J1B HN3A H N N 224
J1B HO3 H N N 225
J1B H4 H N N 226
J1B H5 H N N 227
J1B H8 H N N 228
J1B HN9 H N N 229
J1B HN9A H N N 230
J1B H10 H N N 231
J1B H10A H N N 232
J1B HN10 H N N 233
J1B H11 H N N 234
J1B H12 H N N 235
J1B H12A H N N 236
J1B HN12 H N N 237
J1B H13 H N N 238
J1B H13A H N N 239
J1B H14 H N N 240
J1B H14A H N N 241
J1B H15 H N N 242
J1B H15A H N N 243
J1B H16 H N N 244
J1B H16A H N N 245
J1B H18 H N N 246
J1B H18A H N N 247
J1B H23 H N N 248
J1B H23A H N N 249
J1B H23B H N N 250
J1B H24 H N N 251
J1B H24A H N N 252
J1B H24B H N N 253
J1B H27 H N N 254
J1B H27A H N N 255
J1B HN28 H N N 256
LEU N N N N 257
LEU CA C N S 258
LEU C C N N 259
LEU O O N N 260
LEU CB C N N 261
LEU CG C N N 262
LEU CD1 C N N 263
LEU CD2 C N N 264
LEU OXT O N N 265
LEU H H N N 266
LEU H2 H N N 267
LEU HA H N N 268
LEU HB2 H N N 269
LEU HB3 H N N 270
LEU HG H N N 271
LEU HD11 H N N 272
LEU HD12 H N N 273
LEU HD13 H N N 274
LEU HD21 H N N 275
LEU HD22 H N N 276
LEU HD23 H N N 277
LEU HXT H N N 278
LYS N N N N 279
LYS CA C N S 280
LYS C C N N 281
LYS O O N N 282
LYS CB C N N 283
LYS CG C N N 284
LYS CD C N N 285
LYS CE C N N 286
LYS NZ N N N 287
LYS OXT O N N 288
LYS H H N N 289
LYS H2 H N N 290
LYS HA H N N 291
LYS HB2 H N N 292
LYS HB3 H N N 293
LYS HG2 H N N 294
LYS HG3 H N N 295
LYS HD2 H N N 296
LYS HD3 H N N 297
LYS HE2 H N N 298
LYS HE3 H N N 299
LYS HZ1 H N N 300
LYS HZ2 H N N 301
LYS HZ3 H N N 302
LYS HXT H N N 303
MET N N N N 304
MET CA C N S 305
MET C C N N 306
MET O O N N 307
MET CB C N N 308
MET CG C N N 309
MET SD S N N 310
MET CE C N N 311
MET OXT O N N 312
MET H H N N 313
MET H2 H N N 314
MET HA H N N 315
MET HB2 H N N 316
MET HB3 H N N 317
MET HG2 H N N 318
MET HG3 H N N 319
MET HE1 H N N 320
MET HE2 H N N 321
MET HE3 H N N 322
MET HXT H N N 323
PHE N N N N 324
PHE CA C N S 325
PHE C C N N 326
PHE O O N N 327
PHE CB C N N 328
PHE CG C Y N 329
PHE CD1 C Y N 330
PHE CD2 C Y N 331
PHE CE1 C Y N 332
PHE CE2 C Y N 333
PHE CZ C Y N 334
PHE OXT O N N 335
PHE H H N N 336
PHE H2 H N N 337
PHE HA H N N 338
PHE HB2 H N N 339
PHE HB3 H N N 340
PHE HD1 H N N 341
PHE HD2 H N N 342
PHE HE1 H N N 343
PHE HE2 H N N 344
PHE HZ H N N 345
PHE HXT H N N 346
PRO N N N N 347
PRO CA C N S 348
PRO C C N N 349
PRO O O N N 350
PRO CB C N N 351
PRO CG C N N 352
PRO CD C N N 353
PRO OXT O N N 354
PRO H H N N 355
PRO HA H N N 356
PRO HB2 H N N 357
PRO HB3 H N N 358
PRO HG2 H N N 359
PRO HG3 H N N 360
PRO HD2 H N N 361
PRO HD3 H N N 362
PRO HXT H N N 363
SER N N N N 364
SER CA C N S 365
SER C C N N 366
SER O O N N 367
SER CB C N N 368
SER OG O N N 369
SER OXT O N N 370
SER H H N N 371
SER H2 H N N 372
SER HA H N N 373
SER HB2 H N N 374
SER HB3 H N N 375
SER HG H N N 376
SER HXT H N N 377
THR N N N N 378
THR CA C N S 379
THR C C N N 380
THR O O N N 381
THR CB C N R 382
THR OG1 O N N 383
THR CG2 C N N 384
THR OXT O N N 385
THR H H N N 386
THR H2 H N N 387
THR HA H N N 388
THR HB H N N 389
THR HG1 H N N 390
THR HG21 H N N 391
THR HG22 H N N 392
THR HG23 H N N 393
THR HXT H N N 394
TRP N N N N 395
TRP CA C N S 396
TRP C C N N 397
TRP O O N N 398
TRP CB C N N 399
TRP CG C Y N 400
TRP CD1 C Y N 401
TRP CD2 C Y N 402
TRP NE1 N Y N 403
TRP CE2 C Y N 404
TRP CE3 C Y N 405
TRP CZ2 C Y N 406
TRP CZ3 C Y N 407
TRP CH2 C Y N 408
TRP OXT O N N 409
TRP H H N N 410
TRP H2 H N N 411
TRP HA H N N 412
TRP HB2 H N N 413
TRP HB3 H N N 414
TRP HD1 H N N 415
TRP HE1 H N N 416
TRP HE3 H N N 417
TRP HZ2 H N N 418
TRP HZ3 H N N 419
TRP HH2 H N N 420
TRP HXT H N N 421
TYR N N N N 422
TYR CA C N S 423
TYR C C N N 424
TYR O O N N 425
TYR CB C N N 426
TYR CG C Y N 427
TYR CD1 C Y N 428
TYR CD2 C Y N 429
TYR CE1 C Y N 430
TYR CE2 C Y N 431
TYR CZ C Y N 432
TYR OH O N N 433
TYR OXT O N N 434
TYR H H N N 435
TYR H2 H N N 436
TYR HA H N N 437
TYR HB2 H N N 438
TYR HB3 H N N 439
TYR HD1 H N N 440
TYR HD2 H N N 441
TYR HE1 H N N 442
TYR HE2 H N N 443
TYR HH H N N 444
TYR HXT H N N 445
VAL N N N N 446
VAL CA C N S 447
VAL C C N N 448
VAL O O N N 449
VAL CB C N N 450
VAL CG1 C N N 451
VAL CG2 C N N 452
VAL OXT O N N 453
VAL H H N N 454
VAL H2 H N N 455
VAL HA H N N 456
VAL HB H N N 457
VAL HG11 H N N 458
VAL HG12 H N N 459
VAL HG13 H N N 460
VAL HG21 H N N 461
VAL HG22 H N N 462
VAL HG23 H N N 463
VAL HXT H N N 464
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ACT C O doub N N 1
ACT C OXT sing N N 2
ACT C CH3 sing N N 3
ACT CH3 H1 sing N N 4
ACT CH3 H2 sing N N 5
ACT CH3 H3 sing N N 6
ALA N CA sing N N 7
ALA N H sing N N 8
ALA N H2 sing N N 9
ALA CA C sing N N 10
ALA CA CB sing N N 11
ALA CA HA sing N N 12
ALA C O doub N N 13
ALA C OXT sing N N 14
ALA CB HB1 sing N N 15
ALA CB HB2 sing N N 16
ALA CB HB3 sing N N 17
ALA OXT HXT sing N N 18
ARG N CA sing N N 19
ARG N H sing N N 20
ARG N H2 sing N N 21
ARG CA C sing N N 22
ARG CA CB sing N N 23
ARG CA HA sing N N 24
ARG C O doub N N 25
ARG C OXT sing N N 26
ARG CB CG sing N N 27
ARG CB HB2 sing N N 28
ARG CB HB3 sing N N 29
ARG CG CD sing N N 30
ARG CG HG2 sing N N 31
ARG CG HG3 sing N N 32
ARG CD NE sing N N 33
ARG CD HD2 sing N N 34
ARG CD HD3 sing N N 35
ARG NE CZ sing N N 36
ARG NE HE sing N N 37
ARG CZ NH1 sing N N 38
ARG CZ NH2 doub N N 39
ARG NH1 HH11 sing N N 40
ARG NH1 HH12 sing N N 41
ARG NH2 HH21 sing N N 42
ARG NH2 HH22 sing N N 43
ARG OXT HXT sing N N 44
ASN N CA sing N N 45
ASN N H sing N N 46
ASN N H2 sing N N 47
ASN CA C sing N N 48
ASN CA CB sing N N 49
ASN CA HA sing N N 50
ASN C O doub N N 51
ASN C OXT sing N N 52
ASN CB CG sing N N 53
ASN CB HB2 sing N N 54
ASN CB HB3 sing N N 55
ASN CG OD1 doub N N 56
ASN CG ND2 sing N N 57
ASN ND2 HD21 sing N N 58
ASN ND2 HD22 sing N N 59
ASN OXT HXT sing N N 60
ASP N CA sing N N 61
ASP N H sing N N 62
ASP N H2 sing N N 63
ASP CA C sing N N 64
ASP CA CB sing N N 65
ASP CA HA sing N N 66
ASP C O doub N N 67
ASP C OXT sing N N 68
ASP CB CG sing N N 69
ASP CB HB2 sing N N 70
ASP CB HB3 sing N N 71
ASP CG OD1 doub N N 72
ASP CG OD2 sing N N 73
ASP OD2 HD2 sing N N 74
ASP OXT HXT sing N N 75
GLN N CA sing N N 76
GLN N H sing N N 77
GLN N H2 sing N N 78
GLN CA C sing N N 79
GLN CA CB sing N N 80
GLN CA HA sing N N 81
GLN C O doub N N 82
GLN C OXT sing N N 83
GLN CB CG sing N N 84
GLN CB HB2 sing N N 85
GLN CB HB3 sing N N 86
GLN CG CD sing N N 87
GLN CG HG2 sing N N 88
GLN CG HG3 sing N N 89
GLN CD OE1 doub N N 90
GLN CD NE2 sing N N 91
GLN NE2 HE21 sing N N 92
GLN NE2 HE22 sing N N 93
GLN OXT HXT sing N N 94
GLU N CA sing N N 95
GLU N H sing N N 96
GLU N H2 sing N N 97
GLU CA C sing N N 98
GLU CA CB sing N N 99
GLU CA HA sing N N 100
GLU C O doub N N 101
GLU C OXT sing N N 102
GLU CB CG sing N N 103
GLU CB HB2 sing N N 104
GLU CB HB3 sing N N 105
GLU CG CD sing N N 106
GLU CG HG2 sing N N 107
GLU CG HG3 sing N N 108
GLU CD OE1 doub N N 109
GLU CD OE2 sing N N 110
GLU OE2 HE2 sing N N 111
GLU OXT HXT sing N N 112
GLY N CA sing N N 113
GLY N H sing N N 114
GLY N H2 sing N N 115
GLY CA C sing N N 116
GLY CA HA2 sing N N 117
GLY CA HA3 sing N N 118
GLY C O doub N N 119
GLY C OXT sing N N 120
GLY OXT HXT sing N N 121
HIS N CA sing N N 122
HIS N H sing N N 123
HIS N H2 sing N N 124
HIS CA C sing N N 125
HIS CA CB sing N N 126
HIS CA HA sing N N 127
HIS C O doub N N 128
HIS C OXT sing N N 129
HIS CB CG sing N N 130
HIS CB HB2 sing N N 131
HIS CB HB3 sing N N 132
HIS CG ND1 sing Y N 133
HIS CG CD2 doub Y N 134
HIS ND1 CE1 doub Y N 135
HIS ND1 HD1 sing N N 136
HIS CD2 NE2 sing Y N 137
HIS CD2 HD2 sing N N 138
HIS CE1 NE2 sing Y N 139
HIS CE1 HE1 sing N N 140
HIS NE2 HE2 sing N N 141
HIS OXT HXT sing N N 142
HOH O H1 sing N N 143
HOH O H2 sing N N 144
ILE N CA sing N N 145
ILE N H sing N N 146
ILE N H2 sing N N 147
ILE CA C sing N N 148
ILE CA CB sing N N 149
ILE CA HA sing N N 150
ILE C O doub N N 151
ILE C OXT sing N N 152
ILE CB CG1 sing N N 153
ILE CB CG2 sing N N 154
ILE CB HB sing N N 155
ILE CG1 CD1 sing N N 156
ILE CG1 HG12 sing N N 157
ILE CG1 HG13 sing N N 158
ILE CG2 HG21 sing N N 159
ILE CG2 HG22 sing N N 160
ILE CG2 HG23 sing N N 161
ILE CD1 HD11 sing N N 162
ILE CD1 HD12 sing N N 163
ILE CD1 HD13 sing N N 164
ILE OXT HXT sing N N 165
J1B C1 O1 sing N N 166
J1B C1 C2 sing N N 167
J1B C1 C10 sing N N 168
J1B N1 C4 sing N N 169
J1B N1 C5 sing Y N 170
J1B N1 C9 sing Y N 171
J1B O1 C4 sing N N 172
J1B S1 C10 sing N N 173
J1B S1 C11 sing N N 174
J1B C2 O2 sing N N 175
J1B C2 C3 sing N N 176
J1B N2 C5 doub Y N 177
J1B N2 C6 sing Y N 178
J1B C3 O3 sing N N 179
J1B C3 C4 sing N N 180
J1B N3 C7 sing N N 181
J1B N4 C7 doub Y N 182
J1B N4 C8 sing Y N 183
J1B N5 C8 doub Y N 184
J1B N5 C9 sing Y N 185
J1B O5 C20 doub N N 186
J1B C6 C7 sing Y N 187
J1B C6 C9 doub Y N 188
J1B N6 C13 sing N N 189
J1B N6 C14 sing N N 190
J1B N6 C16 sing N N 191
J1B N8 C19 doub N N 192
J1B N8 C25 sing N N 193
J1B N9 C19 sing N N 194
J1B N10 C19 sing N N 195
J1B N10 C20 sing N N 196
J1B C11 C12 sing N N 197
J1B C11 C15 sing N N 198
J1B N11 C21 doub N N 199
J1B N11 C26 sing N N 200
J1B C12 C13 sing N N 201
J1B N12 C22 sing N N 202
J1B N12 C25 sing N N 203
J1B C14 C15 sing N N 204
J1B C16 C27 sing N N 205
J1B C18 C21 sing N N 206
J1B C18 N28 sing N N 207
J1B C20 C26 sing N N 208
J1B C21 C22 sing N N 209
J1B C22 C23 sing N N 210
J1B C22 C24 sing N N 211
J1B C25 C26 doub N N 212
J1B C27 N28 sing N N 213
J1B C1 H1 sing N N 214
J1B C2 H2 sing N N 215
J1B O2 HO2 sing N N 216
J1B C3 H3 sing N N 217
J1B N3 HN3 sing N N 218
J1B N3 HN3A sing N N 219
J1B O3 HO3 sing N N 220
J1B C4 H4 sing N N 221
J1B C5 H5 sing N N 222
J1B C8 H8 sing N N 223
J1B N9 HN9 sing N N 224
J1B N9 HN9A sing N N 225
J1B C10 H10 sing N N 226
J1B C10 H10A sing N N 227
J1B N10 HN10 sing N N 228
J1B C11 H11 sing N N 229
J1B C12 H12 sing N N 230
J1B C12 H12A sing N N 231
J1B N12 HN12 sing N N 232
J1B C13 H13 sing N N 233
J1B C13 H13A sing N N 234
J1B C14 H14 sing N N 235
J1B C14 H14A sing N N 236
J1B C15 H15 sing N N 237
J1B C15 H15A sing N N 238
J1B C16 H16 sing N N 239
J1B C16 H16A sing N N 240
J1B C18 H18 sing N N 241
J1B C18 H18A sing N N 242
J1B C23 H23 sing N N 243
J1B C23 H23A sing N N 244
J1B C23 H23B sing N N 245
J1B C24 H24 sing N N 246
J1B C24 H24A sing N N 247
J1B C24 H24B sing N N 248
J1B C27 H27 sing N N 249
J1B C27 H27A sing N N 250
J1B N28 HN28 sing N N 251
LEU N CA sing N N 252
LEU N H sing N N 253
LEU N H2 sing N N 254
LEU CA C sing N N 255
LEU CA CB sing N N 256
LEU CA HA sing N N 257
LEU C O doub N N 258
LEU C OXT sing N N 259
LEU CB CG sing N N 260
LEU CB HB2 sing N N 261
LEU CB HB3 sing N N 262
LEU CG CD1 sing N N 263
LEU CG CD2 sing N N 264
LEU CG HG sing N N 265
LEU CD1 HD11 sing N N 266
LEU CD1 HD12 sing N N 267
LEU CD1 HD13 sing N N 268
LEU CD2 HD21 sing N N 269
LEU CD2 HD22 sing N N 270
LEU CD2 HD23 sing N N 271
LEU OXT HXT sing N N 272
LYS N CA sing N N 273
LYS N H sing N N 274
LYS N H2 sing N N 275
LYS CA C sing N N 276
LYS CA CB sing N N 277
LYS CA HA sing N N 278
LYS C O doub N N 279
LYS C OXT sing N N 280
LYS CB CG sing N N 281
LYS CB HB2 sing N N 282
LYS CB HB3 sing N N 283
LYS CG CD sing N N 284
LYS CG HG2 sing N N 285
LYS CG HG3 sing N N 286
LYS CD CE sing N N 287
LYS CD HD2 sing N N 288
LYS CD HD3 sing N N 289
LYS CE NZ sing N N 290
LYS CE HE2 sing N N 291
LYS CE HE3 sing N N 292
LYS NZ HZ1 sing N N 293
LYS NZ HZ2 sing N N 294
LYS NZ HZ3 sing N N 295
LYS OXT HXT sing N N 296
MET N CA sing N N 297
MET N H sing N N 298
MET N H2 sing N N 299
MET CA C sing N N 300
MET CA CB sing N N 301
MET CA HA sing N N 302
MET C O doub N N 303
MET C OXT sing N N 304
MET CB CG sing N N 305
MET CB HB2 sing N N 306
MET CB HB3 sing N N 307
MET CG SD sing N N 308
MET CG HG2 sing N N 309
MET CG HG3 sing N N 310
MET SD CE sing N N 311
MET CE HE1 sing N N 312
MET CE HE2 sing N N 313
MET CE HE3 sing N N 314
MET OXT HXT sing N N 315
PHE N CA sing N N 316
PHE N H sing N N 317
PHE N H2 sing N N 318
PHE CA C sing N N 319
PHE CA CB sing N N 320
PHE CA HA sing N N 321
PHE C O doub N N 322
PHE C OXT sing N N 323
PHE CB CG sing N N 324
PHE CB HB2 sing N N 325
PHE CB HB3 sing N N 326
PHE CG CD1 doub Y N 327
PHE CG CD2 sing Y N 328
PHE CD1 CE1 sing Y N 329
PHE CD1 HD1 sing N N 330
PHE CD2 CE2 doub Y N 331
PHE CD2 HD2 sing N N 332
PHE CE1 CZ doub Y N 333
PHE CE1 HE1 sing N N 334
PHE CE2 CZ sing Y N 335
PHE CE2 HE2 sing N N 336
PHE CZ HZ sing N N 337
PHE OXT HXT sing N N 338
PRO N CA sing N N 339
PRO N CD sing N N 340
PRO N H sing N N 341
PRO CA C sing N N 342
PRO CA CB sing N N 343
PRO CA HA sing N N 344
PRO C O doub N N 345
PRO C OXT sing N N 346
PRO CB CG sing N N 347
PRO CB HB2 sing N N 348
PRO CB HB3 sing N N 349
PRO CG CD sing N N 350
PRO CG HG2 sing N N 351
PRO CG HG3 sing N N 352
PRO CD HD2 sing N N 353
PRO CD HD3 sing N N 354
PRO OXT HXT sing N N 355
SER N CA sing N N 356
SER N H sing N N 357
SER N H2 sing N N 358
SER CA C sing N N 359
SER CA CB sing N N 360
SER CA HA sing N N 361
SER C O doub N N 362
SER C OXT sing N N 363
SER CB OG sing N N 364
SER CB HB2 sing N N 365
SER CB HB3 sing N N 366
SER OG HG sing N N 367
SER OXT HXT sing N N 368
THR N CA sing N N 369
THR N H sing N N 370
THR N H2 sing N N 371
THR CA C sing N N 372
THR CA CB sing N N 373
THR CA HA sing N N 374
THR C O doub N N 375
THR C OXT sing N N 376
THR CB OG1 sing N N 377
THR CB CG2 sing N N 378
THR CB HB sing N N 379
THR OG1 HG1 sing N N 380
THR CG2 HG21 sing N N 381
THR CG2 HG22 sing N N 382
THR CG2 HG23 sing N N 383
THR OXT HXT sing N N 384
TRP N CA sing N N 385
TRP N H sing N N 386
TRP N H2 sing N N 387
TRP CA C sing N N 388
TRP CA CB sing N N 389
TRP CA HA sing N N 390
TRP C O doub N N 391
TRP C OXT sing N N 392
TRP CB CG sing N N 393
TRP CB HB2 sing N N 394
TRP CB HB3 sing N N 395
TRP CG CD1 doub Y N 396
TRP CG CD2 sing Y N 397
TRP CD1 NE1 sing Y N 398
TRP CD1 HD1 sing N N 399
TRP CD2 CE2 doub Y N 400
TRP CD2 CE3 sing Y N 401
TRP NE1 CE2 sing Y N 402
TRP NE1 HE1 sing N N 403
TRP CE2 CZ2 sing Y N 404
TRP CE3 CZ3 doub Y N 405
TRP CE3 HE3 sing N N 406
TRP CZ2 CH2 doub Y N 407
TRP CZ2 HZ2 sing N N 408
TRP CZ3 CH2 sing Y N 409
TRP CZ3 HZ3 sing N N 410
TRP CH2 HH2 sing N N 411
TRP OXT HXT sing N N 412
TYR N CA sing N N 413
TYR N H sing N N 414
TYR N H2 sing N N 415
TYR CA C sing N N 416
TYR CA CB sing N N 417
TYR CA HA sing N N 418
TYR C O doub N N 419
TYR C OXT sing N N 420
TYR CB CG sing N N 421
TYR CB HB2 sing N N 422
TYR CB HB3 sing N N 423
TYR CG CD1 doub Y N 424
TYR CG CD2 sing Y N 425
TYR CD1 CE1 sing Y N 426
TYR CD1 HD1 sing N N 427
TYR CD2 CE2 doub Y N 428
TYR CD2 HD2 sing N N 429
TYR CE1 CZ doub Y N 430
TYR CE1 HE1 sing N N 431
TYR CE2 CZ sing Y N 432
TYR CE2 HE2 sing N N 433
TYR CZ OH sing N N 434
TYR OH HH sing N N 435
TYR OXT HXT sing N N 436
VAL N CA sing N N 437
VAL N H sing N N 438
VAL N H2 sing N N 439
VAL CA C sing N N 440
VAL CA CB sing N N 441
VAL CA HA sing N N 442
VAL C O doub N N 443
VAL C OXT sing N N 444
VAL CB CG1 sing N N 445
VAL CB CG2 sing N N 446
VAL CB HB sing N N 447
VAL CG1 HG11 sing N N 448
VAL CG1 HG12 sing N N 449
VAL CG1 HG13 sing N N 450
VAL CG2 HG21 sing N N 451
VAL CG2 HG22 sing N N 452
VAL CG2 HG23 sing N N 453
VAL OXT HXT sing N N 454
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 "5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)methyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine"
J1B
3 'ACETATE ION'
ACT
4 water
HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3ILJ
_pdbx_initial_refinement_model.details 'PDB entry 3ILJ'
#