HEADER OXIDOREDUCTASE 28-OCT-11 3UDO TITLE CRYSTAL STRUCTURE OF PUTATIVE ISOPROPYLAMLATE DEHYDROGENASE FROM TITLE 2 CAMPYLOBACTER JEJUNI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-ISOPROPYLMALATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3-IPM-DH, BETA-IPM DEHYDROGENASE, IMDH; COMPND 5 EC: 1.1.1.85; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 GENE: LEUB, CJ1718C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, PUTATIVE ISOPROPYLAMLATE DEHYDROGENASE, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.L.TKACZUK,M.CHRUSZCZ,B.J.BLUS,O.ONOPRIYENKO,S.GRIMSHAW,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,W.MINOR,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS AUTHOR 3 DISEASES (CSGID) REVDAT 5 13-APR-22 3UDO 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 2 1 LINK REVDAT 4 08-NOV-17 3UDO 1 REMARK REVDAT 3 01-OCT-14 3UDO 1 AUTHOR REVDAT 2 08-FEB-12 3UDO 1 REVDAT 1 09-NOV-11 3UDO 0 JRNL AUTH K.L.TKACZUK,M.CHRUSZCZ,B.J.BLUS,O.ONOPRIYENKO,S.GRIMSHAW, JRNL AUTH 2 A.SAVCHENKO,W.F.ANDERSON,W.MINOR, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ISOPROPYLAMLATE DEHYDROGENASE JRNL TITL 2 FROM CAMPYLOBACTER JEJUNI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1091 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1290 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2723 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.94000 REMARK 3 B22 (A**2) : 2.94000 REMARK 3 B33 (A**2) : -5.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.271 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2800 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1870 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3784 ; 1.786 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4605 ; 0.987 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 6.387 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;36.863 ;25.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;15.710 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.918 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 436 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3091 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 519 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4354 35.7288 75.1829 REMARK 3 T TENSOR REMARK 3 T11: 0.1175 T22: 0.1008 REMARK 3 T33: 0.0990 T12: 0.0981 REMARK 3 T13: 0.0295 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 1.8774 L22: 0.4421 REMARK 3 L33: 2.8654 L12: 0.0951 REMARK 3 L13: -1.3151 L23: 0.0943 REMARK 3 S TENSOR REMARK 3 S11: 0.2171 S12: 0.0784 S13: 0.2826 REMARK 3 S21: -0.0625 S22: -0.0190 S23: 0.1590 REMARK 3 S31: -0.5191 S32: -0.4752 S33: -0.1981 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6516 21.0908 87.0861 REMARK 3 T TENSOR REMARK 3 T11: 0.0605 T22: 0.0443 REMARK 3 T33: 0.0497 T12: 0.0021 REMARK 3 T13: 0.0096 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.3890 L22: 1.0826 REMARK 3 L33: 15.0876 L12: -0.5635 REMARK 3 L13: -4.4629 L23: 2.5744 REMARK 3 S TENSOR REMARK 3 S11: -0.2451 S12: -0.0257 S13: -0.0268 REMARK 3 S21: 0.2081 S22: 0.0245 S23: 0.1310 REMARK 3 S31: 0.8678 S32: 0.1393 S33: 0.2206 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 355 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3906 23.0110 71.9854 REMARK 3 T TENSOR REMARK 3 T11: 0.0593 T22: 0.0153 REMARK 3 T33: 0.0509 T12: -0.0032 REMARK 3 T13: 0.0212 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.8943 L22: 0.8064 REMARK 3 L33: 1.2930 L12: -0.2282 REMARK 3 L13: -0.2799 L23: -0.2143 REMARK 3 S TENSOR REMARK 3 S11: 0.1386 S12: -0.0029 S13: 0.0108 REMARK 3 S21: -0.1436 S22: -0.0320 S23: -0.0619 REMARK 3 S31: -0.0988 S32: -0.0402 S33: -0.1066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9772 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21382 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 40.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : 0.59500 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, RESOLVE, CCP4 REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%PEG3350, 0.2M NA CHLORIDE, REMARK 280 0.1MHEPES, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.89350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.39700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.39700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.84025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.39700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.39700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.94675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.39700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.39700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 122.84025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.39700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.39700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.94675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.89350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 163.78700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 ASP A 356 REMARK 465 ASN A 357 REMARK 465 GLY A 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 LYS A 336 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 93 -60.05 -94.25 REMARK 500 ARG A 180 -127.25 -128.44 REMARK 500 ASN A 230 68.27 -162.15 REMARK 500 ASP A 235 -78.53 -115.83 REMARK 500 SER A 240 172.33 -54.72 REMARK 500 ASP A 283 -39.85 -39.47 REMARK 500 GLU A 309 78.03 -104.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 364 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP01791 RELATED DB: TARGETDB DBREF 3UDO A 1 358 UNP Q9PLW0 LEU3_CAMJE 1 358 SEQADV 3UDO SER A -2 UNP Q9PLW0 EXPRESSION TAG SEQADV 3UDO ASN A -1 UNP Q9PLW0 EXPRESSION TAG SEQADV 3UDO ALA A 0 UNP Q9PLW0 EXPRESSION TAG SEQADV 3UDO LEU A 39 UNP Q9PLW0 PHE 39 ENGINEERED MUTATION SEQRES 1 A 361 SER ASN ALA MSE LYS THR TYR LYS VAL ALA VAL LEU ALA SEQRES 2 A 361 GLY ASP GLY ILE GLY PRO LEU VAL MSE LYS GLU ALA LEU SEQRES 3 A 361 LYS ILE LEU THR PHE ILE ALA GLN LYS TYR ASN PHE SER SEQRES 4 A 361 PHE GLU LEU ASN GLU ALA LYS ILE GLY GLY ALA SER ILE SEQRES 5 A 361 ASP ALA TYR GLY VAL ALA LEU SER ASP GLU THR LEU LYS SEQRES 6 A 361 LEU CYS GLU GLN SER ASP ALA ILE LEU PHE GLY SER VAL SEQRES 7 A 361 GLY GLY PRO LYS TRP ASP ASN LEU PRO ILE ASP GLN ARG SEQRES 8 A 361 PRO GLU ARG ALA SER LEU LEU PRO LEU ARG LYS HIS PHE SEQRES 9 A 361 ASN LEU PHE ALA ASN LEU ARG PRO CYS LYS ILE TYR GLU SEQRES 10 A 361 SER LEU THR HIS ALA SER PRO LEU LYS ASN GLU ILE ILE SEQRES 11 A 361 GLN LYS GLY VAL ASP ILE LEU CYS VAL ARG GLU LEU THR SEQRES 12 A 361 GLY GLY ILE TYR PHE GLY LYS GLN ASP LEU GLY LYS GLU SEQRES 13 A 361 SER ALA TYR ASP THR GLU ILE TYR THR LYS LYS GLU ILE SEQRES 14 A 361 GLU ARG ILE ALA ARG ILE ALA PHE GLU SER ALA ARG ILE SEQRES 15 A 361 ARG LYS LYS LYS VAL HIS LEU ILE ASP LYS ALA ASN VAL SEQRES 16 A 361 LEU ALA SER SER ILE LEU TRP ARG GLU VAL VAL ALA ASN SEQRES 17 A 361 VAL ALA LYS ASP TYR GLN ASP ILE ASN LEU GLU TYR MSE SEQRES 18 A 361 TYR VAL ASP ASN ALA ALA MSE GLN ILE VAL LYS ASN PRO SEQRES 19 A 361 SER ILE PHE ASP VAL MSE LEU CYS SER ASN LEU PHE GLY SEQRES 20 A 361 ASP ILE LEU SER ASP GLU LEU ALA ALA ILE ASN GLY SER SEQRES 21 A 361 LEU GLY LEU LEU SER SER ALA SER LEU ASN ASP LYS GLY SEQRES 22 A 361 PHE GLY LEU TYR GLU PRO ALA GLY GLY SER ALA PRO ASP SEQRES 23 A 361 ILE ALA HIS LEU ASN ILE ALA ASN PRO ILE ALA GLN ILE SEQRES 24 A 361 LEU SER ALA ALA LEU MSE LEU LYS TYR SER PHE LYS GLU SEQRES 25 A 361 GLU GLN ALA ALA GLN ASP ILE GLU ASN ALA ILE SER LEU SEQRES 26 A 361 ALA LEU ALA GLN GLY LYS MSE THR LYS ASP LEU ASN ALA SEQRES 27 A 361 LYS SER TYR LEU ASN THR ASP GLU MSE GLY ASP CYS ILE SEQRES 28 A 361 LEU GLU ILE LEU LYS GLU ASN ASP ASN GLY MODRES 3UDO MSE A 1 MET SELENOMETHIONINE MODRES 3UDO MSE A 19 MET SELENOMETHIONINE MODRES 3UDO MSE A 218 MET SELENOMETHIONINE MODRES 3UDO MSE A 225 MET SELENOMETHIONINE MODRES 3UDO MSE A 237 MET SELENOMETHIONINE MODRES 3UDO MSE A 302 MET SELENOMETHIONINE MODRES 3UDO MSE A 329 MET SELENOMETHIONINE MODRES 3UDO MSE A 344 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 19 8 HET MSE A 218 8 HET MSE A 225 8 HET MSE A 237 8 HET MSE A 302 8 HET MSE A 329 8 HET MSE A 344 8 HET EDO A 359 4 HET EDO A 360 4 HET SO4 A 361 5 HET SO4 A 362 5 HET SO4 A 363 5 HET SO4 A 364 5 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 HOH *92(H2 O) HELIX 1 1 ILE A 14 TYR A 33 1 20 HELIX 2 2 GLY A 45 GLY A 53 1 9 HELIX 3 3 SER A 57 GLN A 66 1 10 HELIX 4 4 GLY A 77 ASP A 81 5 5 HELIX 5 5 PRO A 84 GLN A 87 5 4 HELIX 6 6 ARG A 88 PHE A 101 1 14 HELIX 7 7 TYR A 113 SER A 120 5 8 HELIX 8 8 LYS A 123 LYS A 129 1 7 HELIX 9 9 GLY A 141 PHE A 145 5 5 HELIX 10 10 THR A 162 ILE A 179 1 18 HELIX 11 11 LEU A 193 LYS A 208 1 16 HELIX 12 12 VAL A 220 ASN A 230 1 11 HELIX 13 13 PRO A 231 PHE A 234 5 4 HELIX 14 14 SER A 240 GLY A 256 1 17 HELIX 15 15 SER A 257 LEU A 260 5 4 HELIX 16 16 ALA A 281 ALA A 285 5 5 HELIX 17 17 PRO A 292 LYS A 308 1 17 HELIX 18 18 GLU A 309 GLN A 326 1 18 HELIX 19 19 ASN A 340 ASN A 355 1 16 SHEET 1 A10 SER A 36 ALA A 42 0 SHEET 2 A10 THR A 3 GLY A 11 1 N VAL A 6 O ASN A 40 SHEET 3 A10 ALA A 69 SER A 74 1 O GLY A 73 N LEU A 9 SHEET 4 A10 GLY A 272 PRO A 276 1 O TYR A 274 N PHE A 72 SHEET 5 A10 SER A 262 LEU A 266 -1 N SER A 265 O LEU A 273 SHEET 6 A10 ALA A 105 LYS A 111 -1 N LEU A 107 O ALA A 264 SHEET 7 A10 ASP A 132 GLU A 138 -1 O ARG A 137 N ASN A 106 SHEET 8 A10 VAL A 236 CYS A 239 1 O MSE A 237 N VAL A 136 SHEET 9 A10 LYS A 183 ASP A 188 1 N HIS A 185 O LEU A 238 SHEET 10 A10 ASN A 214 TYR A 219 1 O GLU A 216 N VAL A 184 SHEET 1 B 2 ASP A 149 LEU A 150 0 SHEET 2 B 2 ALA A 155 TYR A 156 -1 O TYR A 156 N ASP A 149 LINK C MSE A 1 N LYS A 2 1555 1555 1.34 LINK C VAL A 18 N MSE A 19 1555 1555 1.34 LINK C MSE A 19 N LYS A 20 1555 1555 1.33 LINK C TYR A 217 N MSE A 218 1555 1555 1.33 LINK C MSE A 218 N TYR A 219 1555 1555 1.32 LINK C ALA A 224 N MSE A 225 1555 1555 1.32 LINK C MSE A 225 N GLN A 226 1555 1555 1.33 LINK C VAL A 236 N MSE A 237 1555 1555 1.32 LINK C MSE A 237 N LEU A 238 1555 1555 1.34 LINK C LEU A 301 N MSE A 302 1555 1555 1.33 LINK C MSE A 302 N LEU A 303 1555 1555 1.36 LINK C LYS A 328 N MSE A 329 1555 1555 1.33 LINK C MSE A 329 N THR A 330 1555 1555 1.34 LINK C GLU A 343 N MSE A 344 1555 1555 1.34 LINK C MSE A 344 N GLY A 345 1555 1555 1.32 SITE 1 AC1 2 ASN A 291 HOH A 408 SITE 1 AC2 7 PRO A 109 CYS A 110 LYS A 111 TYR A 113 SITE 2 AC2 7 ASN A 255 LEU A 260 LEU A 261 SITE 1 AC3 6 ARG A 98 ARG A 137 ASP A 245 SO4 A 364 SITE 2 AC3 6 HOH A 424 HOH A 442 SITE 1 AC4 3 ARG A 108 ASP A 249 ALA A 277 SITE 1 AC5 2 ILE A 85 ARG A 88 SITE 1 AC6 8 ARG A 98 ASN A 106 ARG A 108 SER A 263 SITE 2 AC6 8 GLU A 275 ALA A 277 SO4 A 361 HOH A 442 CRYST1 74.794 74.794 163.787 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013370 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013370 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006105 0.00000 HETATM 1 N MSE A 1 -14.205 41.637 53.909 1.00103.06 N ANISOU 1 N MSE A 1 12828 15113 11216 3427 39 2359 N HETATM 2 CA MSE A 1 -13.219 41.713 55.036 1.00111.59 C ANISOU 2 CA MSE A 1 14128 15745 12528 3235 128 2217 C HETATM 3 C MSE A 1 -13.393 40.535 55.979 1.00105.44 C ANISOU 3 C MSE A 1 13200 15029 11832 2980 25 1983 C HETATM 4 O MSE A 1 -14.314 40.527 56.823 1.00100.34 O ANISOU 4 O MSE A 1 12447 14469 11208 3063 19 1965 O HETATM 5 CB MSE A 1 -13.357 43.039 55.805 1.00119.61 C ANISOU 5 CB MSE A 1 15349 16453 13645 3472 307 2346 C HETATM 6 CG MSE A 1 -12.335 43.137 56.952 1.00123.73 C ANISOU 6 CG MSE A 1 16082 16548 14382 3257 398 2188 C HETATM 7 SE MSE A 1 -11.931 45.018 57.424 1.00135.43 SE ANISOU 7 SE MSE A 1 17937 17540 15979 3494 680 2353 SE HETATM 8 CE MSE A 1 -10.031 44.963 57.962 1.00117.19 C ANISOU 8 CE MSE A 1 15887 14787 13853 3113 760 2154 C