HEADER TRANSFERASE/TRANSFERASE INHIBITOR 28-OCT-11 3UE4 TITLE STRUCTURAL AND SPECTROSCOPIC ANALYSIS OF THE KINASE INHIBITOR TITLE 2 BOSUTINIB BINDING TO THE ABL TYROSINE KINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1, ABELSON COMPND 5 TYROSINE-PROTEIN KINASE 1, PROTO-ONCOGENE C-ABL, P150; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL1, ABL, JTK7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 KEYWDS PROTEIN KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.G.BOXER,N.M.LEVINSON REVDAT 3 28-FEB-24 3UE4 1 REMARK SEQADV REVDAT 2 25-APR-12 3UE4 1 JRNL REVDAT 1 18-APR-12 3UE4 0 JRNL AUTH N.M.LEVINSON,S.G.BOXER JRNL TITL STRUCTURAL AND SPECTROSCOPIC ANALYSIS OF THE KINASE JRNL TITL 2 INHIBITOR BOSUTINIB AND AN ISOMER OF BOSUTINIB BINDING TO JRNL TITL 3 THE ABL TYROSINE KINASE DOMAIN. JRNL REF PLOS ONE V. 7 29828 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22493660 JRNL DOI 10.1371/JOURNAL.PONE.0029828 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.740 REMARK 3 FREE R VALUE TEST SET COUNT : 2033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.8421 - 5.9766 0.93 2018 147 0.2097 0.2482 REMARK 3 2 5.9766 - 4.7443 0.94 1904 133 0.1722 0.2186 REMARK 3 3 4.7443 - 4.1447 0.91 1872 136 0.1514 0.1956 REMARK 3 4 4.1447 - 3.7658 0.90 1803 130 0.1685 0.2362 REMARK 3 5 3.7658 - 3.4959 0.90 1800 134 0.1679 0.2251 REMARK 3 6 3.4959 - 3.2898 0.90 1815 134 0.1729 0.2160 REMARK 3 7 3.2898 - 3.1250 0.92 1827 128 0.1916 0.2762 REMARK 3 8 3.1250 - 2.9890 0.94 1868 136 0.1836 0.2745 REMARK 3 9 2.9890 - 2.8739 0.95 1892 137 0.1865 0.2227 REMARK 3 10 2.8739 - 2.7748 0.96 1879 139 0.1937 0.2906 REMARK 3 11 2.7748 - 2.6880 0.97 1914 136 0.2109 0.2861 REMARK 3 12 2.6880 - 2.6112 0.96 1918 129 0.2262 0.2994 REMARK 3 13 2.6112 - 2.5424 0.96 1880 148 0.2227 0.3357 REMARK 3 14 2.5424 - 2.4804 0.96 1901 135 0.2410 0.3006 REMARK 3 15 2.4804 - 2.4240 0.92 1834 131 0.2573 0.3202 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 37.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.09290 REMARK 3 B22 (A**2) : 14.19010 REMARK 3 B33 (A**2) : -11.09720 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4551 REMARK 3 ANGLE : 1.059 6159 REMARK 3 CHIRALITY : 0.075 648 REMARK 3 PLANARITY : 0.004 769 REMARK 3 DIHEDRAL : 18.749 1693 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 233:247) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0077 19.7929 -40.7157 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.3537 REMARK 3 T33: 0.2871 T12: -0.0558 REMARK 3 T13: -0.0566 T23: -0.1749 REMARK 3 L TENSOR REMARK 3 L11: 0.5047 L22: 1.1004 REMARK 3 L33: 0.8042 L12: -0.6494 REMARK 3 L13: 0.5779 L23: -0.7418 REMARK 3 S TENSOR REMARK 3 S11: -0.0654 S12: -0.1151 S13: 0.2504 REMARK 3 S21: 0.0303 S22: -0.1344 S23: -0.0686 REMARK 3 S31: -0.1277 S32: 0.0046 S33: -0.2349 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 248:264) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9109 17.8621 -46.6071 REMARK 3 T TENSOR REMARK 3 T11: 0.1236 T22: 0.4464 REMARK 3 T33: 0.3108 T12: -0.0446 REMARK 3 T13: -0.0293 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.3802 L22: 0.7839 REMARK 3 L33: 3.6243 L12: 0.2840 REMARK 3 L13: -0.6747 L23: 0.6769 REMARK 3 S TENSOR REMARK 3 S11: 0.1206 S12: -0.4419 S13: 0.3482 REMARK 3 S21: 0.0044 S22: 0.0189 S23: 0.1786 REMARK 3 S31: -0.3510 S32: -0.9388 S33: 0.3723 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 265:292) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6781 23.7842 -40.3064 REMARK 3 T TENSOR REMARK 3 T11: 0.1460 T22: 0.1385 REMARK 3 T33: 0.2002 T12: -0.0538 REMARK 3 T13: 0.0571 T23: -0.0977 REMARK 3 L TENSOR REMARK 3 L11: 0.6859 L22: 1.5762 REMARK 3 L33: 0.3772 L12: -0.0799 REMARK 3 L13: -0.1437 L23: 0.1438 REMARK 3 S TENSOR REMARK 3 S11: 0.2192 S12: -0.1879 S13: 0.1596 REMARK 3 S21: -0.0007 S22: -0.0498 S23: -0.2195 REMARK 3 S31: -0.0848 S32: 0.0691 S33: 0.0744 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 293:379) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3965 8.1578 -44.6191 REMARK 3 T TENSOR REMARK 3 T11: 0.0558 T22: 0.1644 REMARK 3 T33: 0.1027 T12: -0.0047 REMARK 3 T13: -0.0016 T23: -0.0668 REMARK 3 L TENSOR REMARK 3 L11: 0.3779 L22: 0.4844 REMARK 3 L33: 0.1890 L12: 0.0816 REMARK 3 L13: -0.0335 L23: -0.0220 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: -0.1211 S13: 0.0300 REMARK 3 S21: -0.0987 S22: 0.0633 S23: -0.0139 REMARK 3 S31: 0.0284 S32: 0.1045 S33: 0.0245 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 380:396) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7894 19.6390 -33.8596 REMARK 3 T TENSOR REMARK 3 T11: 0.2223 T22: 0.3586 REMARK 3 T33: 0.2663 T12: -0.0507 REMARK 3 T13: 0.0253 T23: -0.1411 REMARK 3 L TENSOR REMARK 3 L11: 0.2206 L22: 0.3339 REMARK 3 L33: 0.0713 L12: -0.2656 REMARK 3 L13: 0.1201 L23: -0.1521 REMARK 3 S TENSOR REMARK 3 S11: -0.1614 S12: 0.1299 S13: 0.1542 REMARK 3 S21: 0.0679 S22: 0.0105 S23: -0.2109 REMARK 3 S31: -0.0494 S32: 0.1874 S33: -0.0552 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 397:444) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8154 14.1276 -47.8644 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.0882 REMARK 3 T33: 0.1043 T12: -0.0172 REMARK 3 T13: -0.0160 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 0.2737 L22: 0.0436 REMARK 3 L33: 0.3016 L12: -0.0986 REMARK 3 L13: 0.0304 L23: -0.0681 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.0182 S13: -0.0056 REMARK 3 S21: -0.1015 S22: 0.0077 S23: 0.0946 REMARK 3 S31: -0.0754 S32: 0.1537 S33: -0.0041 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 445:502) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3342 3.3920 -46.3026 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.0925 REMARK 3 T33: 0.1068 T12: -0.0343 REMARK 3 T13: -0.0087 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.5991 L22: 0.5034 REMARK 3 L33: 0.4050 L12: 0.0211 REMARK 3 L13: 0.0130 L23: 0.0335 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: -0.1604 S13: -0.0753 REMARK 3 S21: -0.1013 S22: 0.0746 S23: 0.0380 REMARK 3 S31: 0.0820 S32: -0.1914 S33: 0.0571 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 233:264) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2073 46.6767 -41.1119 REMARK 3 T TENSOR REMARK 3 T11: 0.5669 T22: 0.4181 REMARK 3 T33: 0.1362 T12: 0.1672 REMARK 3 T13: 0.0321 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.5151 L22: 0.5207 REMARK 3 L33: 0.2368 L12: 0.0482 REMARK 3 L13: -0.2221 L23: 0.0995 REMARK 3 S TENSOR REMARK 3 S11: 0.1838 S12: 0.3131 S13: 0.2349 REMARK 3 S21: -0.5112 S22: 0.0622 S23: -0.0285 REMARK 3 S31: -0.4472 S32: -0.1237 S33: 0.0361 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 265:279) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6468 53.3572 -34.8924 REMARK 3 T TENSOR REMARK 3 T11: 0.3813 T22: 0.2361 REMARK 3 T33: 0.3455 T12: 0.0981 REMARK 3 T13: -0.1532 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.0174 L22: 0.0757 REMARK 3 L33: 0.9115 L12: 0.2776 REMARK 3 L13: -0.9634 L23: -0.2627 REMARK 3 S TENSOR REMARK 3 S11: -0.0933 S12: 0.3369 S13: 0.3587 REMARK 3 S21: -0.1991 S22: 0.1577 S23: 0.0539 REMARK 3 S31: -0.0899 S32: -0.3133 S33: 0.0491 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 280:292) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6172 50.5038 -29.2736 REMARK 3 T TENSOR REMARK 3 T11: 0.4550 T22: 0.2676 REMARK 3 T33: 0.2176 T12: 0.0001 REMARK 3 T13: -0.0306 T23: -0.0608 REMARK 3 L TENSOR REMARK 3 L11: 0.5926 L22: 0.2297 REMARK 3 L33: 0.1955 L12: 0.3694 REMARK 3 L13: -0.3411 L23: -0.2120 REMARK 3 S TENSOR REMARK 3 S11: -0.0594 S12: -0.6094 S13: 0.1578 REMARK 3 S21: 0.1226 S22: -0.0303 S23: -0.2308 REMARK 3 S31: -0.4857 S32: 0.3372 S33: -0.0088 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 293:336) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2415 39.2946 -29.6233 REMARK 3 T TENSOR REMARK 3 T11: 0.2423 T22: 0.2807 REMARK 3 T33: 0.1884 T12: 0.0301 REMARK 3 T13: -0.0364 T23: -0.0636 REMARK 3 L TENSOR REMARK 3 L11: 0.2989 L22: 0.3894 REMARK 3 L33: 0.5765 L12: 0.1468 REMARK 3 L13: 0.3573 L23: 0.0584 REMARK 3 S TENSOR REMARK 3 S11: -0.0718 S12: 0.1502 S13: -0.0164 REMARK 3 S21: -0.3281 S22: -0.0614 S23: 0.0774 REMARK 3 S31: -0.0546 S32: -0.1535 S33: -0.0125 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 337:417) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8469 40.7904 -16.4203 REMARK 3 T TENSOR REMARK 3 T11: 0.1593 T22: 0.0964 REMARK 3 T33: 0.1571 T12: 0.0252 REMARK 3 T13: 0.0395 T23: -0.0722 REMARK 3 L TENSOR REMARK 3 L11: 0.5678 L22: 0.0997 REMARK 3 L33: 0.7727 L12: 0.1649 REMARK 3 L13: -0.1808 L23: 0.1396 REMARK 3 S TENSOR REMARK 3 S11: 0.1793 S12: 0.0780 S13: 0.0833 REMARK 3 S21: 0.0231 S22: 0.0180 S23: -0.0605 REMARK 3 S31: -0.2248 S32: -0.0460 S33: 0.0983 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 418:485) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9325 36.6269 -4.2105 REMARK 3 T TENSOR REMARK 3 T11: 0.1455 T22: 0.1230 REMARK 3 T33: 0.1691 T12: -0.0432 REMARK 3 T13: 0.0229 T23: -0.0749 REMARK 3 L TENSOR REMARK 3 L11: 0.1738 L22: 0.2416 REMARK 3 L33: 0.7386 L12: -0.1891 REMARK 3 L13: -0.2549 L23: 0.1528 REMARK 3 S TENSOR REMARK 3 S11: 0.0872 S12: 0.0002 S13: -0.0469 REMARK 3 S21: 0.0384 S22: -0.0772 S23: 0.0024 REMARK 3 S31: 0.0187 S32: -0.1420 S33: -0.0012 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 486:502) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5970 21.9439 -14.5513 REMARK 3 T TENSOR REMARK 3 T11: 0.3214 T22: 0.1098 REMARK 3 T33: 0.2184 T12: 0.0792 REMARK 3 T13: -0.0280 T23: -0.0564 REMARK 3 L TENSOR REMARK 3 L11: 0.1032 L22: 0.0600 REMARK 3 L33: 0.0969 L12: 0.0147 REMARK 3 L13: -0.0485 L23: -0.0725 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: 0.0997 S13: -0.2565 REMARK 3 S21: -0.1443 S22: 0.0707 S23: -0.2925 REMARK 3 S31: 0.3592 S32: 0.0817 S33: 0.0249 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068639. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18506 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.424 REMARK 200 RESOLUTION RANGE LOW (A) : 63.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM ACETATE 0.1M BISTRIS PH REMARK 280 5.5 11% PEG 10K, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.82000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.82000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 226 REMARK 465 HIS A 227 REMARK 465 MET A 228 REMARK 465 SER A 229 REMARK 465 PRO A 230 REMARK 465 ASN A 231 REMARK 465 TYR A 232 REMARK 465 SER A 503 REMARK 465 ASP A 504 REMARK 465 GLU A 505 REMARK 465 VAL A 506 REMARK 465 GLU A 507 REMARK 465 LYS A 508 REMARK 465 GLU A 509 REMARK 465 LEU A 510 REMARK 465 GLY A 511 REMARK 465 LYS A 512 REMARK 465 GLY B 226 REMARK 465 HIS B 227 REMARK 465 MET B 228 REMARK 465 SER B 229 REMARK 465 PRO B 230 REMARK 465 ASN B 231 REMARK 465 TYR B 232 REMARK 465 GLN B 252 REMARK 465 TYR B 253 REMARK 465 SER B 503 REMARK 465 ASP B 504 REMARK 465 GLU B 505 REMARK 465 VAL B 506 REMARK 465 GLU B 507 REMARK 465 LYS B 508 REMARK 465 GLU B 509 REMARK 465 LEU B 510 REMARK 465 GLY B 511 REMARK 465 LYS B 512 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 252 CG CD OE1 NE2 REMARK 470 TYR A 253 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 750 O HOH A 757 1.99 REMARK 500 OG SER A 417 O HOH A 743 2.02 REMARK 500 OD1 ASN A 479 O HOH A 761 2.08 REMARK 500 O HOH A 744 O HOH A 759 2.11 REMARK 500 O HOH B 748 O HOH B 759 2.14 REMARK 500 O HOH A 745 O HOH A 756 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 234 -21.26 90.43 REMARK 500 GLN A 252 -94.71 -178.19 REMARK 500 LYS A 274 -72.13 -46.24 REMARK 500 GLU A 275 -160.33 -113.99 REMARK 500 THR A 277 178.45 47.49 REMARK 500 ASP A 363 58.93 -154.00 REMARK 500 PRO A 402 97.57 -69.93 REMARK 500 LYS B 245 -137.94 -128.74 REMARK 500 LYS B 274 175.73 -58.39 REMARK 500 GLU B 275 -160.57 -105.51 REMARK 500 GLU B 279 -3.15 -51.50 REMARK 500 ARG B 307 -53.15 -123.78 REMARK 500 ASN B 336 -166.91 -101.48 REMARK 500 ARG B 362 -0.41 76.68 REMARK 500 ASP B 363 43.81 -151.10 REMARK 500 ALA B 397 -73.23 -155.88 REMARK 500 ASP B 455 7.64 84.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 252 TYR A 253 146.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DB8 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DB8 B 601 DBREF 3UE4 A 229 512 UNP P00519 ABL1_HUMAN 229 512 DBREF 3UE4 B 229 512 UNP P00519 ABL1_HUMAN 229 512 SEQADV 3UE4 GLY A 226 UNP P00519 EXPRESSION TAG SEQADV 3UE4 HIS A 227 UNP P00519 EXPRESSION TAG SEQADV 3UE4 MET A 228 UNP P00519 EXPRESSION TAG SEQADV 3UE4 GLY B 226 UNP P00519 EXPRESSION TAG SEQADV 3UE4 HIS B 227 UNP P00519 EXPRESSION TAG SEQADV 3UE4 MET B 228 UNP P00519 EXPRESSION TAG SEQRES 1 A 287 GLY HIS MET SER PRO ASN TYR ASP LYS TRP GLU MET GLU SEQRES 2 A 287 ARG THR ASP ILE THR MET LYS HIS LYS LEU GLY GLY GLY SEQRES 3 A 287 GLN TYR GLY GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SEQRES 4 A 287 SER LEU THR VAL ALA VAL LYS THR LEU LYS GLU ASP THR SEQRES 5 A 287 MET GLU VAL GLU GLU PHE LEU LYS GLU ALA ALA VAL MET SEQRES 6 A 287 LYS GLU ILE LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY SEQRES 7 A 287 VAL CYS THR ARG GLU PRO PRO PHE TYR ILE ILE THR GLU SEQRES 8 A 287 PHE MET THR TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU SEQRES 9 A 287 CYS ASN ARG GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR SEQRES 10 A 287 MET ALA THR GLN ILE SER SER ALA MET GLU TYR LEU GLU SEQRES 11 A 287 LYS LYS ASN PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN SEQRES 12 A 287 CYS LEU VAL GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP SEQRES 13 A 287 PHE GLY LEU SER ARG LEU MET THR GLY ASP THR TYR THR SEQRES 14 A 287 ALA HIS ALA GLY ALA LYS PHE PRO ILE LYS TRP THR ALA SEQRES 15 A 287 PRO GLU SER LEU ALA TYR ASN LYS PHE SER ILE LYS SER SEQRES 16 A 287 ASP VAL TRP ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA SEQRES 17 A 287 THR TYR GLY MET SER PRO TYR PRO GLY ILE ASP LEU SER SEQRES 18 A 287 GLN VAL TYR GLU LEU LEU GLU LYS ASP TYR ARG MET GLU SEQRES 19 A 287 ARG PRO GLU GLY CYS PRO GLU LYS VAL TYR GLU LEU MET SEQRES 20 A 287 ARG ALA CYS TRP GLN TRP ASN PRO SER ASP ARG PRO SER SEQRES 21 A 287 PHE ALA GLU ILE HIS GLN ALA PHE GLU THR MET PHE GLN SEQRES 22 A 287 GLU SER SER ILE SER ASP GLU VAL GLU LYS GLU LEU GLY SEQRES 23 A 287 LYS SEQRES 1 B 287 GLY HIS MET SER PRO ASN TYR ASP LYS TRP GLU MET GLU SEQRES 2 B 287 ARG THR ASP ILE THR MET LYS HIS LYS LEU GLY GLY GLY SEQRES 3 B 287 GLN TYR GLY GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SEQRES 4 B 287 SER LEU THR VAL ALA VAL LYS THR LEU LYS GLU ASP THR SEQRES 5 B 287 MET GLU VAL GLU GLU PHE LEU LYS GLU ALA ALA VAL MET SEQRES 6 B 287 LYS GLU ILE LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY SEQRES 7 B 287 VAL CYS THR ARG GLU PRO PRO PHE TYR ILE ILE THR GLU SEQRES 8 B 287 PHE MET THR TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU SEQRES 9 B 287 CYS ASN ARG GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR SEQRES 10 B 287 MET ALA THR GLN ILE SER SER ALA MET GLU TYR LEU GLU SEQRES 11 B 287 LYS LYS ASN PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN SEQRES 12 B 287 CYS LEU VAL GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP SEQRES 13 B 287 PHE GLY LEU SER ARG LEU MET THR GLY ASP THR TYR THR SEQRES 14 B 287 ALA HIS ALA GLY ALA LYS PHE PRO ILE LYS TRP THR ALA SEQRES 15 B 287 PRO GLU SER LEU ALA TYR ASN LYS PHE SER ILE LYS SER SEQRES 16 B 287 ASP VAL TRP ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA SEQRES 17 B 287 THR TYR GLY MET SER PRO TYR PRO GLY ILE ASP LEU SER SEQRES 18 B 287 GLN VAL TYR GLU LEU LEU GLU LYS ASP TYR ARG MET GLU SEQRES 19 B 287 ARG PRO GLU GLY CYS PRO GLU LYS VAL TYR GLU LEU MET SEQRES 20 B 287 ARG ALA CYS TRP GLN TRP ASN PRO SER ASP ARG PRO SER SEQRES 21 B 287 PHE ALA GLU ILE HIS GLN ALA PHE GLU THR MET PHE GLN SEQRES 22 B 287 GLU SER SER ILE SER ASP GLU VAL GLU LYS GLU LEU GLY SEQRES 23 B 287 LYS HET DB8 A 601 36 HET DB8 B 601 36 HETNAM DB8 4-[(2,4-DICHLORO-5-METHOXYPHENYL)AMINO]-6-METHOXY-7-[3- HETNAM 2 DB8 (4-METHYLPIPERAZIN-1-YL)PROPOXY]QUINOLINE-3- HETNAM 3 DB8 CARBONITRILE HETSYN DB8 BOSUTINIB FORMUL 3 DB8 2(C26 H29 CL2 N5 O3) FORMUL 5 HOH *152(H2 O) HELIX 1 1 GLU A 238 THR A 240 5 3 HELIX 2 2 LYS A 263 SER A 265 5 3 HELIX 3 3 GLU A 279 GLU A 292 1 14 HELIX 4 4 LEU A 323 CYS A 330 1 8 HELIX 5 5 ASN A 336 LYS A 357 1 22 HELIX 6 6 ALA A 365 ARG A 367 5 3 HELIX 7 7 GLU A 373 HIS A 375 5 3 HELIX 8 8 PRO A 402 THR A 406 5 5 HELIX 9 9 ALA A 407 ASN A 414 1 8 HELIX 10 10 SER A 417 THR A 434 1 18 HELIX 11 11 ASP A 444 SER A 446 5 3 HELIX 12 12 GLN A 447 LYS A 454 1 8 HELIX 13 13 PRO A 465 TRP A 476 1 12 HELIX 14 14 ASN A 479 ARG A 483 5 5 HELIX 15 15 SER A 485 SER A 501 1 17 HELIX 16 16 GLU B 238 THR B 240 5 3 HELIX 17 17 LYS B 263 SER B 265 5 3 HELIX 18 18 GLU B 279 ILE B 293 1 15 HELIX 19 19 ASN B 322 CYS B 330 1 9 HELIX 20 20 ASN B 336 LYS B 357 1 22 HELIX 21 21 ALA B 365 ARG B 367 5 3 HELIX 22 22 GLU B 373 HIS B 375 5 3 HELIX 23 23 PRO B 402 THR B 406 5 5 HELIX 24 24 ALA B 407 ASN B 414 1 8 HELIX 25 25 SER B 417 TYR B 435 1 19 HELIX 26 26 ASP B 444 SER B 446 5 3 HELIX 27 27 GLN B 447 LYS B 454 1 8 HELIX 28 28 PRO B 465 TRP B 476 1 12 HELIX 29 29 ASN B 479 ARG B 483 5 5 HELIX 30 30 SER B 485 ILE B 502 1 18 SHEET 1 A 5 ILE A 242 GLY A 250 0 SHEET 2 A 5 GLU A 255 TRP A 261 -1 O VAL A 256 N LEU A 248 SHEET 3 A 5 LEU A 266 LEU A 273 -1 O VAL A 268 N GLY A 259 SHEET 4 A 5 PHE A 311 GLU A 316 -1 O ILE A 313 N LYS A 271 SHEET 5 A 5 LEU A 301 CYS A 305 -1 N LEU A 302 O ILE A 314 SHEET 1 B 3 GLY A 321 ASN A 322 0 SHEET 2 B 3 CYS A 369 VAL A 371 -1 O VAL A 371 N GLY A 321 SHEET 3 B 3 VAL A 377 VAL A 379 -1 O LYS A 378 N LEU A 370 SHEET 1 C 2 PHE A 359 HIS A 361 0 SHEET 2 C 2 LEU A 384 ARG A 386 -1 O SER A 385 N ILE A 360 SHEET 1 D 2 TYR A 393 THR A 394 0 SHEET 2 D 2 LYS A 415 PHE A 416 -1 O PHE A 416 N TYR A 393 SHEET 1 E 5 ILE B 242 GLY B 249 0 SHEET 2 E 5 GLU B 255 TRP B 261 -1 O VAL B 256 N LEU B 248 SHEET 3 E 5 LEU B 266 LEU B 273 -1 O LEU B 266 N TRP B 261 SHEET 4 E 5 PHE B 311 GLU B 316 -1 O ILE B 313 N LYS B 271 SHEET 5 E 5 LEU B 301 CYS B 305 -1 N LEU B 302 O ILE B 314 SHEET 1 F 2 PHE B 359 ILE B 360 0 SHEET 2 F 2 SER B 385 ARG B 386 -1 O SER B 385 N ILE B 360 SHEET 1 G 2 CYS B 369 VAL B 371 0 SHEET 2 G 2 VAL B 377 VAL B 379 -1 O LYS B 378 N LEU B 370 SHEET 1 H 2 TYR B 393 THR B 394 0 SHEET 2 H 2 LYS B 415 PHE B 416 -1 O PHE B 416 N TYR B 393 CISPEP 1 GLY A 251 GLN A 252 0 -4.06 CISPEP 2 PRO A 309 PRO A 310 0 -2.43 CISPEP 3 PRO B 309 PRO B 310 0 0.85 SITE 1 AC1 14 LEU A 248 ALA A 269 LYS A 271 VAL A 299 SITE 2 AC1 14 ILE A 313 THR A 315 GLU A 316 PHE A 317 SITE 3 AC1 14 MET A 318 THR A 319 LEU A 370 PHE A 382 SITE 4 AC1 14 HOH A 752 HOH A 775 SITE 1 AC2 15 LEU B 248 ALA B 269 LYS B 271 VAL B 299 SITE 2 AC2 15 ILE B 313 THR B 315 GLU B 316 PHE B 317 SITE 3 AC2 15 MET B 318 THR B 319 GLY B 321 LEU B 370 SITE 4 AC2 15 PHE B 382 HOH B 744 HOH B 747 CRYST1 56.860 113.760 127.640 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017587 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007835 0.00000