HEADER HYDROLASE 30-OCT-11 3UEK TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF RAT POLY (ADP-RIBOSE) TITLE 2 GLYCOHYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(ADP-RIBOSE) GLYCOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 385-972; COMPND 5 EC: 3.2.1.143; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PARG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MAMMALIAN PARG, MACRODOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.K.KIM,J.R.KIEFER,R.A.STEGEMANN,S.CLASSEN,J.A.TAINER,T.ELLENBERGER REVDAT 3 28-FEB-24 3UEK 1 REMARK REVDAT 2 18-JUL-12 3UEK 1 JRNL REVDAT 1 23-MAY-12 3UEK 0 JRNL AUTH I.K.KIM,J.R.KIEFER,C.M.HO,R.A.STEGEMAN,S.CLASSEN,J.A.TAINER, JRNL AUTH 2 T.ELLENBERGER JRNL TITL STRUCTURE OF MAMMALIAN POLY(ADP-RIBOSE) GLYCOHYDROLASE JRNL TITL 2 REVEALS A FLEXIBLE TYROSINE CLASP AS A SUBSTRATE-BINDING JRNL TITL 3 ELEMENT. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 653 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22609859 JRNL DOI 10.1038/NSMB.2305 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 43903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2343 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4151 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.97000 REMARK 3 B22 (A**2) : -3.03000 REMARK 3 B33 (A**2) : 1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.187 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4260 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2935 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5789 ; 1.619 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7112 ; 0.986 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 520 ; 6.211 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;36.801 ;23.300 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 700 ;15.791 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;16.379 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4752 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 913 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 438 A 958 REMARK 3 ORIGIN FOR THE GROUP (A): -43.6159 -32.3660 5.2803 REMARK 3 T TENSOR REMARK 3 T11: 0.0264 T22: 0.0860 REMARK 3 T33: 0.0399 T12: 0.0246 REMARK 3 T13: 0.0216 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.5508 L22: 3.2706 REMARK 3 L33: 0.7098 L12: -0.0495 REMARK 3 L13: -0.1847 L23: 0.5809 REMARK 3 S TENSOR REMARK 3 S11: -0.0481 S12: 0.0244 S13: -0.1266 REMARK 3 S21: 0.0649 S22: -0.0274 S23: 0.0359 REMARK 3 S31: -0.0204 S32: 0.0747 S33: 0.0755 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): -46.4766 -29.9700 5.3097 REMARK 3 T TENSOR REMARK 3 T11: 0.0405 T22: 0.1168 REMARK 3 T33: 0.0434 T12: 0.0238 REMARK 3 T13: 0.0239 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.5398 L22: 2.5177 REMARK 3 L33: 0.6491 L12: 0.2968 REMARK 3 L13: 0.0384 L23: 0.4469 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: 0.0010 S13: -0.0700 REMARK 3 S21: 0.0263 S22: -0.0473 S23: 0.0899 REMARK 3 S31: -0.0777 S32: 0.0406 S33: 0.0541 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12712 REMARK 200 MONOCHROMATOR : CRYO-COOLED SI(111) DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-20% PEG2000 MONOMETHYLETHER, 0.1M REMARK 280 TRIS-HCL PH7.5, 0.1M NACL, 0.2M POTASSIUM THIOCYANATE., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.25550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 25.25550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 63.26850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 99.74850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 63.26850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 99.74850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.25550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 63.26850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 99.74850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 25.25550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 63.26850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 99.74850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 465 SER A 387 REMARK 465 SER A 388 REMARK 465 LEU A 389 REMARK 465 ASN A 390 REMARK 465 VAL A 391 REMARK 465 ASP A 392 REMARK 465 GLY A 393 REMARK 465 ARG A 394 REMARK 465 SER A 395 REMARK 465 SER A 396 REMARK 465 LYS A 397 REMARK 465 GLN A 398 REMARK 465 HIS A 399 REMARK 465 GLY A 400 REMARK 465 LYS A 401 REMARK 465 ARG A 402 REMARK 465 ASP A 403 REMARK 465 SER A 404 REMARK 465 LYS A 405 REMARK 465 ILE A 406 REMARK 465 THR A 407 REMARK 465 ASP A 408 REMARK 465 HIS A 409 REMARK 465 PHE A 410 REMARK 465 VAL A 411 REMARK 465 ARG A 412 REMARK 465 ILE A 413 REMARK 465 PRO A 414 REMARK 465 LYS A 415 REMARK 465 SER A 416 REMARK 465 GLU A 417 REMARK 465 ASP A 418 REMARK 465 LYS A 419 REMARK 465 ARG A 420 REMARK 465 LYS A 421 REMARK 465 GLU A 422 REMARK 465 GLN A 423 REMARK 465 CYS A 424 REMARK 465 GLU A 425 REMARK 465 VAL A 426 REMARK 465 ARG A 427 REMARK 465 HIS A 428 REMARK 465 GLN A 429 REMARK 465 ARG A 430 REMARK 465 ALA A 431 REMARK 465 GLU A 432 REMARK 465 ARG A 433 REMARK 465 LYS A 434 REMARK 465 ILE A 435 REMARK 465 PRO A 436 REMARK 465 LYS A 437 REMARK 465 SER A 959 REMARK 465 ALA A 960 REMARK 465 GLU A 961 REMARK 465 THR A 962 REMARK 465 SER A 963 REMARK 465 ASP A 964 REMARK 465 GLN A 965 REMARK 465 PRO A 966 REMARK 465 GLY A 967 REMARK 465 GLN A 968 REMARK 465 ARG A 969 REMARK 465 THR A 970 REMARK 465 GLY A 971 REMARK 465 THR A 972 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 446 CG OD1 OD2 REMARK 470 ARG A 466 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 469 CG CD1 CD2 REMARK 470 GLU A 525 CG CD OE1 OE2 REMARK 470 ARG A 526 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 542 CG CD CE NZ REMARK 470 LYS A 575 CG CD CE NZ REMARK 470 GLU A 579 CG CD OE1 OE2 REMARK 470 GLN A 583 CG CD OE1 NE2 REMARK 470 LYS A 644 CG CD CE NZ REMARK 470 MET A 645 CG SD CE REMARK 470 LYS A 646 CG CD CE NZ REMARK 470 ARG A 664 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 727 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 826 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 827 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 957 CG CD OE1 OE2 REMARK 470 SER A 958 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 103 O HOH A 206 4556 1.48 REMARK 500 O HOH A 195 O HOH A 200 4556 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 824 CG HIS A 824 CD2 0.054 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 659 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 695 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 695 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 891 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 540 56.37 -91.43 REMARK 500 SER A 588 -57.36 -127.18 REMARK 500 CYS A 604 78.08 -102.99 REMARK 500 LYS A 614 -10.88 84.26 REMARK 500 LYS A 646 137.14 -174.33 REMARK 500 THR A 712 -167.67 -104.47 REMARK 500 LEU A 748 45.68 -150.78 REMARK 500 VAL A 749 -156.06 -100.68 REMARK 500 ASN A 758 76.32 -115.55 REMARK 500 ALA A 792 -115.89 45.29 REMARK 500 GLN A 811 51.01 34.36 REMARK 500 ASN A 865 79.64 -65.47 REMARK 500 ASP A 938 51.49 -117.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UEL RELATED DB: PDB DBREF 3UEK A 385 972 UNP Q9QYM2 PARG_RAT 385 972 SEQRES 1 A 588 ASN SER SER SER LEU ASN VAL ASP GLY ARG SER SER LYS SEQRES 2 A 588 GLN HIS GLY LYS ARG ASP SER LYS ILE THR ASP HIS PHE SEQRES 3 A 588 VAL ARG ILE PRO LYS SER GLU ASP LYS ARG LYS GLU GLN SEQRES 4 A 588 CYS GLU VAL ARG HIS GLN ARG ALA GLU ARG LYS ILE PRO SEQRES 5 A 588 LYS TYR VAL PRO PRO ASN LEU PRO PRO ASP LYS LYS TRP SEQRES 6 A 588 LEU GLY THR PRO ILE GLU GLU MET ARG LYS MET PRO ARG SEQRES 7 A 588 CYS GLY VAL ARG LEU PRO LEU LEU ARG PRO SER ALA SER SEQRES 8 A 588 HIS THR VAL THR VAL ARG VAL ASP LEU LEU ARG ALA GLY SEQRES 9 A 588 GLU VAL PRO LYS PRO PHE PRO THR HIS TYR LYS ASP LEU SEQRES 10 A 588 TRP ASP ASN LYS HIS VAL LYS MET PRO CYS SER GLU GLN SEQRES 11 A 588 ASN LEU TYR PRO VAL GLU ASP GLU ASN GLY GLU ARG THR SEQRES 12 A 588 ALA GLY SER ARG TRP GLU LEU ILE GLN THR ALA LEU LEU SEQRES 13 A 588 ASN LYS PHE THR ARG PRO GLN ASN LEU LYS ASP ALA ILE SEQRES 14 A 588 LEU LYS TYR ASN VAL ALA TYR SER LYS LYS TRP ASP PHE SEQRES 15 A 588 THR ALA LEU VAL ASP PHE TRP ASP LYS VAL LEU GLU GLU SEQRES 16 A 588 ALA GLU ALA GLN HIS LEU TYR GLN SER ILE LEU PRO ASP SEQRES 17 A 588 MET VAL LYS ILE ALA LEU CYS LEU PRO ASN ILE CYS THR SEQRES 18 A 588 GLN PRO ILE PRO LEU LEU LYS GLN LYS MET ASN HIS SER SEQRES 19 A 588 VAL THR MET SER GLN GLU GLN ILE ALA SER LEU LEU ALA SEQRES 20 A 588 ASN ALA PHE PHE CYS THR PHE PRO ARG ARG ASN ALA LYS SEQRES 21 A 588 MET LYS SER GLU TYR SER SER TYR PRO ASP ILE ASN PHE SEQRES 22 A 588 ASN ARG LEU PHE GLU GLY ARG SER SER ARG LYS PRO GLU SEQRES 23 A 588 LYS LEU LYS THR LEU PHE CYS TYR PHE ARG ARG VAL THR SEQRES 24 A 588 GLU LYS LYS PRO THR GLY LEU VAL THR PHE THR ARG GLN SEQRES 25 A 588 SER LEU GLU ASP PHE PRO GLU TRP GLU ARG CYS ASP LYS SEQRES 26 A 588 PRO LEU THR ARG LEU HIS VAL THR TYR GLU GLY THR ILE SEQRES 27 A 588 GLU GLY ASN GLY ARG GLY MET LEU GLN VAL ASP PHE ALA SEQRES 28 A 588 ASN ARG PHE VAL GLY GLY GLY VAL THR GLY ALA GLY LEU SEQRES 29 A 588 VAL GLN GLU GLU ILE ARG PHE LEU ILE ASN PRO GLU LEU SEQRES 30 A 588 ILE VAL SER ARG LEU PHE THR GLU VAL LEU ASP HIS ASN SEQRES 31 A 588 GLU CYS LEU ILE ILE THR GLY THR GLU GLN TYR SER GLU SEQRES 32 A 588 TYR THR GLY TYR ALA GLU THR TYR ARG TRP ALA ARG SER SEQRES 33 A 588 HIS GLU ASP GLY SER GLU LYS ASP ASP TRP GLN ARG CYS SEQRES 34 A 588 CYS THR GLU ILE VAL ALA ILE ASP ALA LEU HIS PHE ARG SEQRES 35 A 588 ARG TYR LEU ASP GLN PHE VAL PRO GLU LYS VAL ARG ARG SEQRES 36 A 588 GLU LEU ASN LYS ALA TYR CYS GLY PHE LEU ARG PRO GLY SEQRES 37 A 588 VAL PRO PRO GLU ASN LEU SER ALA VAL ALA THR GLY ASN SEQRES 38 A 588 TRP GLY CYS GLY ALA PHE GLY GLY ASP ALA ARG LEU LYS SEQRES 39 A 588 ALA LEU ILE GLN LEU LEU ALA ALA ALA ALA ALA GLU ARG SEQRES 40 A 588 ASP VAL VAL TYR PHE THR PHE GLY ASP SER GLU LEU MET SEQRES 41 A 588 ARG ASP ILE TYR SER MET HIS THR PHE LEU THR GLU ARG SEQRES 42 A 588 LYS LEU ASN VAL GLY LYS VAL TYR ARG LEU LEU LEU ARG SEQRES 43 A 588 TYR TYR ARG GLU GLU CYS ARG ASP CYS SER SER PRO GLY SEQRES 44 A 588 PRO ASP THR LYS LEU TYR PRO PHE ILE TYR HIS ALA ALA SEQRES 45 A 588 GLU SER SER ALA GLU THR SER ASP GLN PRO GLY GLN ARG SEQRES 46 A 588 THR GLY THR FORMUL 2 HOH *203(H2 O) HELIX 1 1 PRO A 453 MET A 457 5 5 HELIX 2 2 ARG A 481 LEU A 485 5 5 HELIX 3 3 ARG A 531 LEU A 540 1 10 HELIX 4 4 ARG A 545 TYR A 556 1 12 HELIX 5 5 ASN A 557 SER A 561 5 5 HELIX 6 6 PHE A 566 LYS A 575 1 10 HELIX 7 7 GLU A 578 SER A 588 1 11 HELIX 8 8 SER A 588 CYS A 599 1 12 HELIX 9 9 CYS A 599 CYS A 604 1 6 HELIX 10 10 GLN A 623 PHE A 635 1 13 HELIX 11 11 PHE A 657 GLU A 662 5 6 HELIX 12 12 ARG A 667 LYS A 685 1 19 HELIX 13 13 GLU A 703 CYS A 707 5 5 HELIX 14 14 THR A 721 GLY A 726 1 6 HELIX 15 15 VAL A 749 ASN A 758 1 10 HELIX 16 16 PRO A 759 ILE A 762 5 4 HELIX 17 17 VAL A 763 THR A 768 1 6 HELIX 18 18 TYR A 791 TYR A 795 5 5 HELIX 19 19 ARG A 827 PHE A 832 5 6 HELIX 20 20 VAL A 833 LEU A 849 1 17 HELIX 21 21 PRO A 854 LEU A 858 5 5 HELIX 22 22 ASP A 874 ALA A 889 1 16 HELIX 23 23 ASP A 900 ARG A 917 1 18 HELIX 24 24 ASN A 920 CYS A 936 1 17 HELIX 25 25 LYS A 947 SER A 958 1 12 SHEET 1 A10 TRP A 449 GLY A 451 0 SHEET 2 A10 LEU A 714 THR A 717 -1 O VAL A 716 N LEU A 450 SHEET 3 A10 VAL A 893 PHE A 896 1 O TYR A 895 N THR A 717 SHEET 4 A10 VAL A 861 GLY A 864 1 N VAL A 861 O VAL A 894 SHEET 5 A10 LEU A 730 ALA A 735 1 N LEU A 730 O ALA A 862 SHEET 6 A10 GLU A 816 ASP A 821 1 O VAL A 818 N ASP A 733 SHEET 7 A10 GLU A 775 THR A 780 -1 N ILE A 779 O ILE A 817 SHEET 8 A10 LEU A 690 SER A 697 -1 N THR A 694 O ILE A 778 SHEET 9 A10 HIS A 617 SER A 622 -1 N HIS A 617 O ARG A 695 SHEET 10 A10 HIS A 476 VAL A 478 1 N THR A 477 O THR A 620 SHEET 1 B 2 LEU A 516 GLU A 520 0 SHEET 2 B 2 ARG A 526 SER A 530 -1 O GLY A 529 N TYR A 517 SHEET 1 C 2 SER A 786 THR A 789 0 SHEET 2 C 2 ARG A 796 SER A 800 -1 O ALA A 798 N GLU A 787 CISPEP 1 MET A 460 PRO A 461 0 -0.41 CISPEP 2 PHE A 494 PRO A 495 0 -2.11 CRYST1 126.537 199.497 50.511 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007903 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019798 0.00000