data_3UF5 # _entry.id 3UF5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3UF5 RCSB RCSB068676 WWPDB D_1000068676 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3EJJ . unspecified PDB 3UEZ . unspecified PDB 3UF2 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UF5 _pdbx_database_status.recvd_initial_deposition_date 2011-10-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Elegheert, J.' 1 'Bracke, N.' 2 'Bekaert, A.' 3 'Savvides, S.N.' 4 # _citation.id primary _citation.title 'Allosteric competitive inactivation of hematopoietic CSF-1 signaling by the viral decoy receptor BARF1' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 19 _citation.page_first 938 _citation.page_last 947 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22902366 _citation.pdbx_database_id_DOI 10.1038/nsmb.2367 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Elegheert, J.' 1 primary 'Bracke, N.' 2 primary 'Pouliot, P.' 3 primary 'Gutsche, I.' 4 primary 'Shkumatov, A.V.' 5 primary 'Tarbouriech, N.' 6 primary 'Verstraete, K.' 7 primary 'Bekaert, A.' 8 primary 'Burmeister, W.P.' 9 primary 'Svergun, D.I.' 10 primary 'Lambrecht, B.N.' 11 primary 'Vergauwen, B.' 12 primary 'Savvides, S.N.' 13 # _cell.entry_id 3UF5 _cell.length_a 36.320 _cell.length_b 68.690 _cell.length_c 144.620 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UF5 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Macrophage colony-stimulating factor 1' 17872.107 2 ? ? 'UNP RESIDUES 33-181' ? 2 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 3 water nat water 18.015 28 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CSF-1, MCSF, Processed macrophage colony-stimulating factor 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMKEVSEHCSHMIGNGHLKVLQQLIDSQMETSCQIAFEFVDQEQLDDPVCYLKKAFFLVQDIIDETMRFKDNTPNANA TERLQELSNNLNSCFTKDYEEQNKACVRTFHETPLQLLEKIKNFFNETKNLLEKDWNIFTKNCNNSFAKCSSR ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMKEVSEHCSHMIGNGHLKVLQQLIDSQMETSCQIAFEFVDQEQLDDPVCYLKKAFFLVQDIIDETMRFKDNTPNANA TERLQELSNNLNSCFTKDYEEQNKACVRTFHETPLQLLEKIKNFFNETKNLLEKDWNIFTKNCNNSFAKCSSR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 LYS n 1 6 GLU n 1 7 VAL n 1 8 SER n 1 9 GLU n 1 10 HIS n 1 11 CYS n 1 12 SER n 1 13 HIS n 1 14 MET n 1 15 ILE n 1 16 GLY n 1 17 ASN n 1 18 GLY n 1 19 HIS n 1 20 LEU n 1 21 LYS n 1 22 VAL n 1 23 LEU n 1 24 GLN n 1 25 GLN n 1 26 LEU n 1 27 ILE n 1 28 ASP n 1 29 SER n 1 30 GLN n 1 31 MET n 1 32 GLU n 1 33 THR n 1 34 SER n 1 35 CYS n 1 36 GLN n 1 37 ILE n 1 38 ALA n 1 39 PHE n 1 40 GLU n 1 41 PHE n 1 42 VAL n 1 43 ASP n 1 44 GLN n 1 45 GLU n 1 46 GLN n 1 47 LEU n 1 48 ASP n 1 49 ASP n 1 50 PRO n 1 51 VAL n 1 52 CYS n 1 53 TYR n 1 54 LEU n 1 55 LYS n 1 56 LYS n 1 57 ALA n 1 58 PHE n 1 59 PHE n 1 60 LEU n 1 61 VAL n 1 62 GLN n 1 63 ASP n 1 64 ILE n 1 65 ILE n 1 66 ASP n 1 67 GLU n 1 68 THR n 1 69 MET n 1 70 ARG n 1 71 PHE n 1 72 LYS n 1 73 ASP n 1 74 ASN n 1 75 THR n 1 76 PRO n 1 77 ASN n 1 78 ALA n 1 79 ASN n 1 80 ALA n 1 81 THR n 1 82 GLU n 1 83 ARG n 1 84 LEU n 1 85 GLN n 1 86 GLU n 1 87 LEU n 1 88 SER n 1 89 ASN n 1 90 ASN n 1 91 LEU n 1 92 ASN n 1 93 SER n 1 94 CYS n 1 95 PHE n 1 96 THR n 1 97 LYS n 1 98 ASP n 1 99 TYR n 1 100 GLU n 1 101 GLU n 1 102 GLN n 1 103 ASN n 1 104 LYS n 1 105 ALA n 1 106 CYS n 1 107 VAL n 1 108 ARG n 1 109 THR n 1 110 PHE n 1 111 HIS n 1 112 GLU n 1 113 THR n 1 114 PRO n 1 115 LEU n 1 116 GLN n 1 117 LEU n 1 118 LEU n 1 119 GLU n 1 120 LYS n 1 121 ILE n 1 122 LYS n 1 123 ASN n 1 124 PHE n 1 125 PHE n 1 126 ASN n 1 127 GLU n 1 128 THR n 1 129 LYS n 1 130 ASN n 1 131 LEU n 1 132 LEU n 1 133 GLU n 1 134 LYS n 1 135 ASP n 1 136 TRP n 1 137 ASN n 1 138 ILE n 1 139 PHE n 1 140 THR n 1 141 LYS n 1 142 ASN n 1 143 CYS n 1 144 ASN n 1 145 ASN n 1 146 SER n 1 147 PHE n 1 148 ALA n 1 149 LYS n 1 150 CYS n 1 151 SER n 1 152 SER n 1 153 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Csf1, Csfm' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) CodonPlus RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CSF1_MOUSE _struct_ref.pdbx_db_accession P07141 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KEVSEHCSHMIGNGHLKVLQQLIDSQMETSCQIAFEFVDQEQLDDPVCYLKKAFFLVQDIIDETMRFKDNTPNANATERL QELSNNLNSCFTKDYEEQNKACVRTFHETPLQLLEKIKNFFNETKNLLEKDWNIFTKNCNNSFAKCSSR ; _struct_ref.pdbx_align_begin 33 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UF5 A 5 ? 153 ? P07141 33 ? 181 ? 1 149 2 1 3UF5 B 5 ? 153 ? P07141 33 ? 181 ? 1 149 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UF5 GLY A 1 ? UNP P07141 ? ? 'EXPRESSION TAG' -3 1 1 3UF5 SER A 2 ? UNP P07141 ? ? 'EXPRESSION TAG' -2 2 1 3UF5 HIS A 3 ? UNP P07141 ? ? 'EXPRESSION TAG' -1 3 1 3UF5 MET A 4 ? UNP P07141 ? ? 'EXPRESSION TAG' 0 4 2 3UF5 GLY B 1 ? UNP P07141 ? ? 'EXPRESSION TAG' -3 5 2 3UF5 SER B 2 ? UNP P07141 ? ? 'EXPRESSION TAG' -2 6 2 3UF5 HIS B 3 ? UNP P07141 ? ? 'EXPRESSION TAG' -1 7 2 3UF5 MET B 4 ? UNP P07141 ? ? 'EXPRESSION TAG' 0 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3UF5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '0.1M Tris, 20% PEG 6000, 0.2M calcium chloride, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-05-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9726 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9726 # _reflns.entry_id 3UF5 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 40.00 _reflns.d_resolution_high 2.80 _reflns.number_obs 9314 _reflns.number_all 9314 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.95 _reflns_shell.percent_possible_all 98.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3UF5 _refine.ls_number_reflns_obs 9312 _refine.ls_number_reflns_all 9312 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.459 _refine.ls_d_res_high 2.800 _refine.ls_percent_reflns_obs 98.48 _refine.ls_R_factor_obs 0.2144 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2097 _refine.ls_R_factor_R_free 0.2578 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.00 _refine.ls_number_reflns_R_free 931 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 39.3982 _refine.aniso_B[2][2] -10.3431 _refine.aniso_B[3][3] -29.0551 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.351 _refine.solvent_model_param_bsol 42.146 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.73 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.72 _refine.pdbx_overall_phase_error 27.36 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2364 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 2396 _refine_hist.d_res_high 2.800 _refine_hist.d_res_low 39.459 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.003 ? ? 2419 'X-RAY DIFFRACTION' ? f_angle_d 0.545 ? ? 3244 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.252 ? ? 906 'X-RAY DIFFRACTION' ? f_chiral_restr 0.037 ? ? 358 'X-RAY DIFFRACTION' ? f_plane_restr 0.002 ? ? 427 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.8002 2.9477 1148 0.3099 98.00 0.3998 . . 128 . . 'X-RAY DIFFRACTION' . 2.9477 3.1324 1188 0.2811 99.00 0.3257 . . 132 . . 'X-RAY DIFFRACTION' . 3.1324 3.3741 1180 0.2371 99.00 0.3202 . . 131 . . 'X-RAY DIFFRACTION' . 3.3741 3.7134 1188 0.2050 99.00 0.2558 . . 132 . . 'X-RAY DIFFRACTION' . 3.7134 4.2502 1189 0.1746 99.00 0.2210 . . 132 . . 'X-RAY DIFFRACTION' . 4.2502 5.3527 1220 0.1785 98.00 0.2602 . . 136 . . 'X-RAY DIFFRACTION' . 5.3527 39.4629 1268 0.2053 97.00 0.2047 . . 140 . . # _struct.entry_id 3UF5 _struct.title 'Crystal structure of the mouse Colony-Stimulating Factor 1 (mCSF-1) cytokine' _struct.pdbx_descriptor 'Macrophage colony-stimulating factor 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UF5 _struct_keywords.pdbx_keywords CYTOKINE _struct_keywords.text 'Hematopoietic cytokine, RTKIII, Four-helix bundle, CYTOKINE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 8 ? HIS A 13 ? SER A 4 HIS A 9 5 ? 6 HELX_P HELX_P2 2 GLY A 16 ? SER A 29 ? GLY A 12 SER A 25 1 ? 14 HELX_P HELX_P3 3 ASP A 49 ? THR A 68 ? ASP A 45 THR A 64 1 ? 20 HELX_P HELX_P4 4 THR A 75 ? ASN A 92 ? THR A 71 ASN A 88 1 ? 18 HELX_P HELX_P5 5 SER A 93 ? PHE A 95 ? SER A 89 PHE A 91 5 ? 3 HELX_P HELX_P6 6 THR A 113 ? ASP A 135 ? THR A 109 ASP A 131 1 ? 23 HELX_P HELX_P7 7 ASN A 137 ? LYS A 141 ? ASN A 133 LYS A 137 5 ? 5 HELX_P HELX_P8 8 CYS A 143 ? CYS A 150 ? CYS A 139 CYS A 146 1 ? 8 HELX_P HELX_P9 9 SER B 8 ? MET B 14 ? SER B 4 MET B 10 5 ? 7 HELX_P HELX_P10 10 GLY B 16 ? GLN B 30 ? GLY B 12 GLN B 26 1 ? 15 HELX_P HELX_P11 11 GLN B 44 ? LEU B 47 ? GLN B 40 LEU B 43 5 ? 4 HELX_P HELX_P12 12 ASP B 49 ? THR B 68 ? ASP B 45 THR B 64 1 ? 20 HELX_P HELX_P13 13 THR B 75 ? LEU B 91 ? THR B 71 LEU B 87 1 ? 17 HELX_P HELX_P14 14 ASN B 92 ? PHE B 95 ? ASN B 88 PHE B 91 5 ? 4 HELX_P HELX_P15 15 THR B 113 ? ASP B 135 ? THR B 109 ASP B 131 1 ? 23 HELX_P HELX_P16 16 ASN B 137 ? LYS B 141 ? ASN B 133 LYS B 137 5 ? 5 HELX_P HELX_P17 17 CYS B 143 ? LYS B 149 ? CYS B 139 LYS B 145 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 11 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 7 A CYS 90 1_555 ? ? ? ? ? ? ? 2.032 ? disulf2 disulf ? ? A CYS 35 SG ? ? ? 1_555 B CYS 35 SG ? ? A CYS 31 B CYS 31 1_555 ? ? ? ? ? ? ? 2.033 ? disulf3 disulf ? ? A CYS 52 SG ? ? ? 1_555 A CYS 143 SG ? ? A CYS 48 A CYS 139 1_555 ? ? ? ? ? ? ? 2.034 ? disulf4 disulf ? ? A CYS 106 SG ? ? ? 1_555 A CYS 150 SG ? ? A CYS 102 A CYS 146 1_555 ? ? ? ? ? ? ? 2.036 ? disulf5 disulf ? ? B CYS 11 SG ? ? ? 1_555 B CYS 94 SG ? ? B CYS 7 B CYS 90 1_555 ? ? ? ? ? ? ? 2.029 ? disulf6 disulf ? ? B CYS 52 SG ? ? ? 1_555 B CYS 143 SG ? ? B CYS 48 B CYS 139 1_555 ? ? ? ? ? ? ? 2.033 ? disulf7 disulf ? ? B CYS 106 SG ? ? ? 1_555 B CYS 150 SG ? ? B CYS 102 B CYS 146 1_555 ? ? ? ? ? ? ? 2.032 ? metalc1 metalc ? ? B THR 109 OG1 ? ? ? 1_555 E CA . CA ? ? B THR 105 B CA 200 1_555 ? ? ? ? ? ? ? 2.387 ? metalc2 metalc ? ? A GLU 9 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 5 A CA 200 1_555 ? ? ? ? ? ? ? 2.403 ? metalc3 metalc ? ? B ASN 142 O ? ? ? 1_555 F CA . CA ? ? B ASN 138 B CA 201 1_555 ? ? ? ? ? ? ? 2.880 ? metalc4 metalc ? ? A GLU 9 OE2 ? ? ? 1_555 C CA . CA ? ? A GLU 5 A CA 200 1_555 ? ? ? ? ? ? ? 2.962 ? metalc5 metalc ? ? B ASN 142 OD1 ? ? ? 1_555 F CA . CA ? ? B ASN 138 B CA 201 1_555 ? ? ? ? ? ? ? 3.057 ? metalc6 metalc ? ? A HIS 13 O ? ? ? 1_555 D CA . CA ? ? A HIS 9 A CA 201 1_555 ? ? ? ? ? ? ? 3.070 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 37 ? VAL A 42 ? ILE A 33 VAL A 38 A 2 VAL A 107 ? GLU A 112 ? VAL A 103 GLU A 108 B 1 ILE B 37 ? VAL B 42 ? ILE B 33 VAL B 38 B 2 VAL B 107 ? GLU B 112 ? VAL B 103 GLU B 108 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 39 ? N PHE A 35 O PHE A 110 ? O PHE A 106 B 1 2 N PHE B 39 ? N PHE B 35 O PHE B 110 ? O PHE B 106 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CA A 200' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CA A 201' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CA B 200' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CA B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLU A 9 ? GLU A 5 . ? 1_555 ? 2 AC1 2 THR A 109 ? THR A 105 . ? 3_545 ? 3 AC2 2 HIS A 13 ? HIS A 9 . ? 1_555 ? 4 AC2 2 SER A 151 ? SER A 147 . ? 3_545 ? 5 AC3 3 ASP B 63 ? ASP B 59 . ? 4_455 ? 6 AC3 3 ASP B 66 ? ASP B 62 . ? 4_455 ? 7 AC3 3 THR B 109 ? THR B 105 . ? 1_555 ? 8 AC4 5 ASP A 135 ? ASP A 131 . ? 2_554 ? 9 AC4 5 ASN A 137 ? ASN A 133 . ? 2_554 ? 10 AC4 5 ASN B 142 ? ASN B 138 . ? 1_555 ? 11 AC4 5 ASN B 144 ? ASN B 140 . ? 1_555 ? 12 AC4 5 ASN B 145 ? ASN B 141 . ? 1_555 ? # _database_PDB_matrix.entry_id 3UF5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UF5 _atom_sites.fract_transf_matrix[1][1] 0.027533 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014558 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006915 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 SER 2 -2 ? ? ? A . n A 1 3 HIS 3 -1 ? ? ? A . n A 1 4 MET 4 0 ? ? ? A . n A 1 5 LYS 5 1 1 LYS LYS A . n A 1 6 GLU 6 2 2 GLU GLU A . n A 1 7 VAL 7 3 3 VAL VAL A . n A 1 8 SER 8 4 4 SER SER A . n A 1 9 GLU 9 5 5 GLU GLU A . n A 1 10 HIS 10 6 6 HIS HIS A . n A 1 11 CYS 11 7 7 CYS CYS A . n A 1 12 SER 12 8 8 SER SER A . n A 1 13 HIS 13 9 9 HIS HIS A . n A 1 14 MET 14 10 10 MET MET A . n A 1 15 ILE 15 11 11 ILE ILE A . n A 1 16 GLY 16 12 12 GLY GLY A . n A 1 17 ASN 17 13 13 ASN ASN A . n A 1 18 GLY 18 14 14 GLY GLY A . n A 1 19 HIS 19 15 15 HIS HIS A . n A 1 20 LEU 20 16 16 LEU LEU A . n A 1 21 LYS 21 17 17 LYS LYS A . n A 1 22 VAL 22 18 18 VAL VAL A . n A 1 23 LEU 23 19 19 LEU LEU A . n A 1 24 GLN 24 20 20 GLN GLN A . n A 1 25 GLN 25 21 21 GLN GLN A . n A 1 26 LEU 26 22 22 LEU LEU A . n A 1 27 ILE 27 23 23 ILE ILE A . n A 1 28 ASP 28 24 24 ASP ASP A . n A 1 29 SER 29 25 25 SER SER A . n A 1 30 GLN 30 26 26 GLN GLN A . n A 1 31 MET 31 27 27 MET MET A . n A 1 32 GLU 32 28 28 GLU GLU A . n A 1 33 THR 33 29 29 THR THR A . n A 1 34 SER 34 30 30 SER SER A . n A 1 35 CYS 35 31 31 CYS CYS A . n A 1 36 GLN 36 32 32 GLN GLN A . n A 1 37 ILE 37 33 33 ILE ILE A . n A 1 38 ALA 38 34 34 ALA ALA A . n A 1 39 PHE 39 35 35 PHE PHE A . n A 1 40 GLU 40 36 36 GLU GLU A . n A 1 41 PHE 41 37 37 PHE PHE A . n A 1 42 VAL 42 38 38 VAL VAL A . n A 1 43 ASP 43 39 39 ASP ASP A . n A 1 44 GLN 44 40 40 GLN GLN A . n A 1 45 GLU 45 41 41 GLU GLU A . n A 1 46 GLN 46 42 42 GLN GLN A . n A 1 47 LEU 47 43 43 LEU LEU A . n A 1 48 ASP 48 44 44 ASP ASP A . n A 1 49 ASP 49 45 45 ASP ASP A . n A 1 50 PRO 50 46 46 PRO PRO A . n A 1 51 VAL 51 47 47 VAL VAL A . n A 1 52 CYS 52 48 48 CYS CYS A . n A 1 53 TYR 53 49 49 TYR TYR A . n A 1 54 LEU 54 50 50 LEU LEU A . n A 1 55 LYS 55 51 51 LYS LYS A . n A 1 56 LYS 56 52 52 LYS LYS A . n A 1 57 ALA 57 53 53 ALA ALA A . n A 1 58 PHE 58 54 54 PHE PHE A . n A 1 59 PHE 59 55 55 PHE PHE A . n A 1 60 LEU 60 56 56 LEU LEU A . n A 1 61 VAL 61 57 57 VAL VAL A . n A 1 62 GLN 62 58 58 GLN GLN A . n A 1 63 ASP 63 59 59 ASP ASP A . n A 1 64 ILE 64 60 60 ILE ILE A . n A 1 65 ILE 65 61 61 ILE ILE A . n A 1 66 ASP 66 62 62 ASP ASP A . n A 1 67 GLU 67 63 63 GLU GLU A . n A 1 68 THR 68 64 64 THR THR A . n A 1 69 MET 69 65 65 MET MET A . n A 1 70 ARG 70 66 66 ARG ARG A . n A 1 71 PHE 71 67 67 PHE PHE A . n A 1 72 LYS 72 68 68 LYS LYS A . n A 1 73 ASP 73 69 69 ASP ASP A . n A 1 74 ASN 74 70 70 ASN ASN A . n A 1 75 THR 75 71 71 THR THR A . n A 1 76 PRO 76 72 72 PRO PRO A . n A 1 77 ASN 77 73 73 ASN ASN A . n A 1 78 ALA 78 74 74 ALA ALA A . n A 1 79 ASN 79 75 75 ASN ASN A . n A 1 80 ALA 80 76 76 ALA ALA A . n A 1 81 THR 81 77 77 THR THR A . n A 1 82 GLU 82 78 78 GLU GLU A . n A 1 83 ARG 83 79 79 ARG ARG A . n A 1 84 LEU 84 80 80 LEU LEU A . n A 1 85 GLN 85 81 81 GLN GLN A . n A 1 86 GLU 86 82 82 GLU GLU A . n A 1 87 LEU 87 83 83 LEU LEU A . n A 1 88 SER 88 84 84 SER SER A . n A 1 89 ASN 89 85 85 ASN ASN A . n A 1 90 ASN 90 86 86 ASN ASN A . n A 1 91 LEU 91 87 87 LEU LEU A . n A 1 92 ASN 92 88 88 ASN ASN A . n A 1 93 SER 93 89 89 SER SER A . n A 1 94 CYS 94 90 90 CYS CYS A . n A 1 95 PHE 95 91 91 PHE PHE A . n A 1 96 THR 96 92 92 THR THR A . n A 1 97 LYS 97 93 93 LYS LYS A . n A 1 98 ASP 98 94 94 ASP ASP A . n A 1 99 TYR 99 95 95 TYR TYR A . n A 1 100 GLU 100 96 96 GLU GLU A . n A 1 101 GLU 101 97 ? ? ? A . n A 1 102 GLN 102 98 ? ? ? A . n A 1 103 ASN 103 99 99 ASN ASN A . n A 1 104 LYS 104 100 100 LYS LYS A . n A 1 105 ALA 105 101 101 ALA ALA A . n A 1 106 CYS 106 102 102 CYS CYS A . n A 1 107 VAL 107 103 103 VAL VAL A . n A 1 108 ARG 108 104 104 ARG ARG A . n A 1 109 THR 109 105 105 THR THR A . n A 1 110 PHE 110 106 106 PHE PHE A . n A 1 111 HIS 111 107 107 HIS HIS A . n A 1 112 GLU 112 108 108 GLU GLU A . n A 1 113 THR 113 109 109 THR THR A . n A 1 114 PRO 114 110 110 PRO PRO A . n A 1 115 LEU 115 111 111 LEU LEU A . n A 1 116 GLN 116 112 112 GLN GLN A . n A 1 117 LEU 117 113 113 LEU LEU A . n A 1 118 LEU 118 114 114 LEU LEU A . n A 1 119 GLU 119 115 115 GLU GLU A . n A 1 120 LYS 120 116 116 LYS LYS A . n A 1 121 ILE 121 117 117 ILE ILE A . n A 1 122 LYS 122 118 118 LYS LYS A . n A 1 123 ASN 123 119 119 ASN ASN A . n A 1 124 PHE 124 120 120 PHE PHE A . n A 1 125 PHE 125 121 121 PHE PHE A . n A 1 126 ASN 126 122 122 ASN ASN A . n A 1 127 GLU 127 123 123 GLU GLU A . n A 1 128 THR 128 124 124 THR THR A . n A 1 129 LYS 129 125 125 LYS LYS A . n A 1 130 ASN 130 126 126 ASN ASN A . n A 1 131 LEU 131 127 127 LEU LEU A . n A 1 132 LEU 132 128 128 LEU LEU A . n A 1 133 GLU 133 129 129 GLU GLU A . n A 1 134 LYS 134 130 130 LYS LYS A . n A 1 135 ASP 135 131 131 ASP ASP A . n A 1 136 TRP 136 132 132 TRP TRP A . n A 1 137 ASN 137 133 133 ASN ASN A . n A 1 138 ILE 138 134 134 ILE ILE A . n A 1 139 PHE 139 135 135 PHE PHE A . n A 1 140 THR 140 136 136 THR THR A . n A 1 141 LYS 141 137 137 LYS LYS A . n A 1 142 ASN 142 138 138 ASN ASN A . n A 1 143 CYS 143 139 139 CYS CYS A . n A 1 144 ASN 144 140 140 ASN ASN A . n A 1 145 ASN 145 141 141 ASN ASN A . n A 1 146 SER 146 142 142 SER SER A . n A 1 147 PHE 147 143 143 PHE PHE A . n A 1 148 ALA 148 144 144 ALA ALA A . n A 1 149 LYS 149 145 145 LYS LYS A . n A 1 150 CYS 150 146 146 CYS CYS A . n A 1 151 SER 151 147 147 SER SER A . n A 1 152 SER 152 148 ? ? ? A . n A 1 153 ARG 153 149 ? ? ? A . n B 1 1 GLY 1 -3 ? ? ? B . n B 1 2 SER 2 -2 ? ? ? B . n B 1 3 HIS 3 -1 ? ? ? B . n B 1 4 MET 4 0 ? ? ? B . n B 1 5 LYS 5 1 1 LYS LYS B . n B 1 6 GLU 6 2 2 GLU GLU B . n B 1 7 VAL 7 3 3 VAL VAL B . n B 1 8 SER 8 4 4 SER SER B . n B 1 9 GLU 9 5 5 GLU GLU B . n B 1 10 HIS 10 6 6 HIS HIS B . n B 1 11 CYS 11 7 7 CYS CYS B . n B 1 12 SER 12 8 8 SER SER B . n B 1 13 HIS 13 9 9 HIS HIS B . n B 1 14 MET 14 10 10 MET MET B . n B 1 15 ILE 15 11 11 ILE ILE B . n B 1 16 GLY 16 12 12 GLY GLY B . n B 1 17 ASN 17 13 13 ASN ASN B . n B 1 18 GLY 18 14 14 GLY GLY B . n B 1 19 HIS 19 15 15 HIS HIS B . n B 1 20 LEU 20 16 16 LEU LEU B . n B 1 21 LYS 21 17 17 LYS LYS B . n B 1 22 VAL 22 18 18 VAL VAL B . n B 1 23 LEU 23 19 19 LEU LEU B . n B 1 24 GLN 24 20 20 GLN GLN B . n B 1 25 GLN 25 21 21 GLN GLN B . n B 1 26 LEU 26 22 22 LEU LEU B . n B 1 27 ILE 27 23 23 ILE ILE B . n B 1 28 ASP 28 24 24 ASP ASP B . n B 1 29 SER 29 25 25 SER SER B . n B 1 30 GLN 30 26 26 GLN GLN B . n B 1 31 MET 31 27 27 MET MET B . n B 1 32 GLU 32 28 28 GLU GLU B . n B 1 33 THR 33 29 29 THR THR B . n B 1 34 SER 34 30 30 SER SER B . n B 1 35 CYS 35 31 31 CYS CYS B . n B 1 36 GLN 36 32 32 GLN GLN B . n B 1 37 ILE 37 33 33 ILE ILE B . n B 1 38 ALA 38 34 34 ALA ALA B . n B 1 39 PHE 39 35 35 PHE PHE B . n B 1 40 GLU 40 36 36 GLU GLU B . n B 1 41 PHE 41 37 37 PHE PHE B . n B 1 42 VAL 42 38 38 VAL VAL B . n B 1 43 ASP 43 39 39 ASP ASP B . n B 1 44 GLN 44 40 40 GLN GLN B . n B 1 45 GLU 45 41 41 GLU GLU B . n B 1 46 GLN 46 42 42 GLN GLN B . n B 1 47 LEU 47 43 43 LEU LEU B . n B 1 48 ASP 48 44 44 ASP ASP B . n B 1 49 ASP 49 45 45 ASP ASP B . n B 1 50 PRO 50 46 46 PRO PRO B . n B 1 51 VAL 51 47 47 VAL VAL B . n B 1 52 CYS 52 48 48 CYS CYS B . n B 1 53 TYR 53 49 49 TYR TYR B . n B 1 54 LEU 54 50 50 LEU LEU B . n B 1 55 LYS 55 51 51 LYS LYS B . n B 1 56 LYS 56 52 52 LYS LYS B . n B 1 57 ALA 57 53 53 ALA ALA B . n B 1 58 PHE 58 54 54 PHE PHE B . n B 1 59 PHE 59 55 55 PHE PHE B . n B 1 60 LEU 60 56 56 LEU LEU B . n B 1 61 VAL 61 57 57 VAL VAL B . n B 1 62 GLN 62 58 58 GLN GLN B . n B 1 63 ASP 63 59 59 ASP ASP B . n B 1 64 ILE 64 60 60 ILE ILE B . n B 1 65 ILE 65 61 61 ILE ILE B . n B 1 66 ASP 66 62 62 ASP ASP B . n B 1 67 GLU 67 63 63 GLU GLU B . n B 1 68 THR 68 64 64 THR THR B . n B 1 69 MET 69 65 65 MET MET B . n B 1 70 ARG 70 66 66 ARG ARG B . n B 1 71 PHE 71 67 67 PHE PHE B . n B 1 72 LYS 72 68 68 LYS LYS B . n B 1 73 ASP 73 69 69 ASP ASP B . n B 1 74 ASN 74 70 70 ASN ASN B . n B 1 75 THR 75 71 71 THR THR B . n B 1 76 PRO 76 72 72 PRO PRO B . n B 1 77 ASN 77 73 73 ASN ASN B . n B 1 78 ALA 78 74 74 ALA ALA B . n B 1 79 ASN 79 75 75 ASN ASN B . n B 1 80 ALA 80 76 76 ALA ALA B . n B 1 81 THR 81 77 77 THR THR B . n B 1 82 GLU 82 78 78 GLU GLU B . n B 1 83 ARG 83 79 79 ARG ARG B . n B 1 84 LEU 84 80 80 LEU LEU B . n B 1 85 GLN 85 81 81 GLN GLN B . n B 1 86 GLU 86 82 82 GLU GLU B . n B 1 87 LEU 87 83 83 LEU LEU B . n B 1 88 SER 88 84 84 SER SER B . n B 1 89 ASN 89 85 85 ASN ASN B . n B 1 90 ASN 90 86 86 ASN ASN B . n B 1 91 LEU 91 87 87 LEU LEU B . n B 1 92 ASN 92 88 88 ASN ASN B . n B 1 93 SER 93 89 89 SER SER B . n B 1 94 CYS 94 90 90 CYS CYS B . n B 1 95 PHE 95 91 91 PHE PHE B . n B 1 96 THR 96 92 92 THR THR B . n B 1 97 LYS 97 93 93 LYS LYS B . n B 1 98 ASP 98 94 94 ASP ASP B . n B 1 99 TYR 99 95 95 TYR TYR B . n B 1 100 GLU 100 96 96 GLU GLU B . n B 1 101 GLU 101 97 ? ? ? B . n B 1 102 GLN 102 98 ? ? ? B . n B 1 103 ASN 103 99 99 ASN ASN B . n B 1 104 LYS 104 100 100 LYS LYS B . n B 1 105 ALA 105 101 101 ALA ALA B . n B 1 106 CYS 106 102 102 CYS CYS B . n B 1 107 VAL 107 103 103 VAL VAL B . n B 1 108 ARG 108 104 104 ARG ARG B . n B 1 109 THR 109 105 105 THR THR B . n B 1 110 PHE 110 106 106 PHE PHE B . n B 1 111 HIS 111 107 107 HIS HIS B . n B 1 112 GLU 112 108 108 GLU GLU B . n B 1 113 THR 113 109 109 THR THR B . n B 1 114 PRO 114 110 110 PRO PRO B . n B 1 115 LEU 115 111 111 LEU LEU B . n B 1 116 GLN 116 112 112 GLN GLN B . n B 1 117 LEU 117 113 113 LEU LEU B . n B 1 118 LEU 118 114 114 LEU LEU B . n B 1 119 GLU 119 115 115 GLU GLU B . n B 1 120 LYS 120 116 116 LYS LYS B . n B 1 121 ILE 121 117 117 ILE ILE B . n B 1 122 LYS 122 118 118 LYS LYS B . n B 1 123 ASN 123 119 119 ASN ASN B . n B 1 124 PHE 124 120 120 PHE PHE B . n B 1 125 PHE 125 121 121 PHE PHE B . n B 1 126 ASN 126 122 122 ASN ASN B . n B 1 127 GLU 127 123 123 GLU GLU B . n B 1 128 THR 128 124 124 THR THR B . n B 1 129 LYS 129 125 125 LYS LYS B . n B 1 130 ASN 130 126 126 ASN ASN B . n B 1 131 LEU 131 127 127 LEU LEU B . n B 1 132 LEU 132 128 128 LEU LEU B . n B 1 133 GLU 133 129 129 GLU GLU B . n B 1 134 LYS 134 130 130 LYS LYS B . n B 1 135 ASP 135 131 131 ASP ASP B . n B 1 136 TRP 136 132 132 TRP TRP B . n B 1 137 ASN 137 133 133 ASN ASN B . n B 1 138 ILE 138 134 134 ILE ILE B . n B 1 139 PHE 139 135 135 PHE PHE B . n B 1 140 THR 140 136 136 THR THR B . n B 1 141 LYS 141 137 137 LYS LYS B . n B 1 142 ASN 142 138 138 ASN ASN B . n B 1 143 CYS 143 139 139 CYS CYS B . n B 1 144 ASN 144 140 140 ASN ASN B . n B 1 145 ASN 145 141 141 ASN ASN B . n B 1 146 SER 146 142 142 SER SER B . n B 1 147 PHE 147 143 143 PHE PHE B . n B 1 148 ALA 148 144 144 ALA ALA B . n B 1 149 LYS 149 145 145 LYS LYS B . n B 1 150 CYS 150 146 146 CYS CYS B . n B 1 151 SER 151 147 ? ? ? B . n B 1 152 SER 152 148 ? ? ? B . n B 1 153 ARG 153 149 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA 1 200 200 CA CA A . D 2 CA 1 201 201 CA CA A . E 2 CA 1 200 200 CA CA B . F 2 CA 1 201 201 CA CA B . G 3 HOH 1 150 2 HOH HOH A . G 3 HOH 2 151 3 HOH HOH A . G 3 HOH 3 152 4 HOH HOH A . G 3 HOH 4 153 5 HOH HOH A . G 3 HOH 5 154 6 HOH HOH A . G 3 HOH 6 155 7 HOH HOH A . G 3 HOH 7 156 12 HOH HOH A . G 3 HOH 8 157 13 HOH HOH A . G 3 HOH 9 158 14 HOH HOH A . G 3 HOH 10 159 15 HOH HOH A . G 3 HOH 11 160 16 HOH HOH A . G 3 HOH 12 161 17 HOH HOH A . G 3 HOH 13 162 18 HOH HOH A . G 3 HOH 14 163 20 HOH HOH A . G 3 HOH 15 164 22 HOH HOH A . G 3 HOH 16 165 28 HOH HOH A . H 3 HOH 1 150 1 HOH HOH B . H 3 HOH 2 151 8 HOH HOH B . H 3 HOH 3 152 9 HOH HOH B . H 3 HOH 4 153 10 HOH HOH B . H 3 HOH 5 154 11 HOH HOH B . H 3 HOH 6 155 19 HOH HOH B . H 3 HOH 7 156 21 HOH HOH B . H 3 HOH 8 157 23 HOH HOH B . H 3 HOH 9 158 24 HOH HOH B . H 3 HOH 10 159 25 HOH HOH B . H 3 HOH 11 160 26 HOH HOH B . H 3 HOH 12 161 27 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1900 ? 1 MORE -35 ? 1 'SSA (A^2)' 15620 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 9 ? A GLU 5 ? 1_555 CA ? C CA . ? A CA 200 ? 1_555 OE2 ? A GLU 9 ? A GLU 5 ? 1_555 47.0 ? 2 O ? B ASN 142 ? B ASN 138 ? 1_555 CA ? F CA . ? B CA 201 ? 1_555 OD1 ? B ASN 142 ? B ASN 138 ? 1_555 76.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-22 2 'Structure model' 1 1 2013-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _software.name PHENIX _software.classification refinement _software.version '(phenix.refine: dev_874)' _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR B 64 ? ? -139.71 -40.95 2 1 CYS B 102 ? ? 78.30 -3.82 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A SER -2 ? A SER 2 3 1 Y 1 A HIS -1 ? A HIS 3 4 1 Y 1 A MET 0 ? A MET 4 5 1 Y 1 A GLU 97 ? A GLU 101 6 1 Y 1 A GLN 98 ? A GLN 102 7 1 Y 1 A SER 148 ? A SER 152 8 1 Y 1 A ARG 149 ? A ARG 153 9 1 Y 1 B GLY -3 ? B GLY 1 10 1 Y 1 B SER -2 ? B SER 2 11 1 Y 1 B HIS -1 ? B HIS 3 12 1 Y 1 B MET 0 ? B MET 4 13 1 Y 1 B GLU 97 ? B GLU 101 14 1 Y 1 B GLN 98 ? B GLN 102 15 1 Y 1 B SER 147 ? B SER 151 16 1 Y 1 B SER 148 ? B SER 152 17 1 Y 1 B ARG 149 ? B ARG 153 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH #