HEADER HYDROLASE/HYDROLASE INHIBITOR 31-OCT-11 3UFA TITLE CRYSTAL STRUCTURE OF THE STAPHYLOCOCCAL SERINE PROTEASE SPLA IN TITLE 2 COMPLEX WITH A SPECIFIC PHOSPHONATE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE SPLA; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.21.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 93061; SOURCE 4 STRAIN: NCTC 8325; SOURCE 5 GENE: SPLA, SAOUHSC_01942; SOURCE 6 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1423 KEYWDS CHYMOTRYPSIN LIKE FOLD, SERINE PROTEASE, EXTRACELLULAR PROTEASE, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.ZDZALIK,E.PIETRUSEWICZ,K.PUSTELNY,J.STEC-NIEMCZYK,G.M.POPOWICZ, AUTHOR 2 J.POTEMPA,J.OLEKSYSZYN,G.DUBIN REVDAT 4 30-OCT-24 3UFA 1 REMARK LINK REVDAT 3 05-MAR-14 3UFA 1 JRNL REVDAT 2 22-JAN-14 3UFA 1 JRNL REVDAT 1 23-JAN-13 3UFA 0 JRNL AUTH E.BURCHACKA,M.ZDZALIK,J.S.NIEMCZYK,K.PUSTELNY,G.POPOWICZ, JRNL AUTH 2 B.WLADYKA,A.DUBIN,J.POTEMPA,M.SIENCZYK,G.DUBIN,J.OLEKSYSZYN JRNL TITL DEVELOPMENT AND BINDING CHARACTERISTICS OF PHOSPHONATE JRNL TITL 2 INHIBITORS OF SPLA PROTEASE FROM STAPHYLOCOCCUS AUREUS. JRNL REF PROTEIN SCI. V. 23 179 2014 JRNL REFN ISSN 0961-8368 JRNL PMID 24375505 JRNL DOI 10.1002/PRO.2403 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 40170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2127 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2578 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : 0.57000 REMARK 3 B12 (A**2) : -0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.202 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3186 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4310 ; 2.111 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 414 ; 7.321 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;40.493 ;25.683 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 542 ;16.880 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;24.667 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.156 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2424 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1992 ; 1.435 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3219 ; 2.320 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1194 ; 3.362 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1083 ; 5.341 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42345 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 53.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 20% PEG 4000, 10% REMARK 280 ISOPROPANOL, PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 147.41533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.70767 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.56150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.85383 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 184.26917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CE NZ REMARK 470 LYS A 60 CE NZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 ASP A 176 N CB CG OD1 OD2 REMARK 470 LYS B 42 CD CE NZ REMARK 470 ASP B 45 CG OD1 OD2 REMARK 470 LYS B 58 CD CE NZ REMARK 470 LYS B 120 CE NZ REMARK 470 GLN B 123 CD OE1 NE2 REMARK 470 LYS B 175 CG CD CE NZ REMARK 470 GLU B 192 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 MET B 128 CG - SD - CE ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 90 -0.05 -179.27 REMARK 500 LYS A 110 -10.87 80.37 REMARK 500 GLU A 177 129.89 140.99 REMARK 500 LYS B 110 -1.47 84.74 REMARK 500 SER B 139 102.42 -162.28 REMARK 500 LYS B 175 -82.51 -94.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 VPF A 201 REMARK 610 VPF B 201 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: N-(3-CARBOXYPROPANOYL)-L-VALYL-N-[(1S)-2-PHENYL-1- REMARK 630 PHOSPHONOETHYL]-L-PROLINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 VPF A 201 REMARK 630 VPF B 201 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: SIN VAL PRO XPH REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VPF A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VPF B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 203 DBREF 3UFA A 1 200 UNP Q2FXC2 SPLA_STAA8 36 235 DBREF 3UFA B 1 200 UNP Q2FXC2 SPLA_STAA8 36 235 SEQRES 1 A 200 GLU LYS ASN VAL LYS GLU ILE THR ASP ALA THR LYS GLU SEQRES 2 A 200 PRO TYR ASN SER VAL VAL ALA PHE VAL GLY GLY THR GLY SEQRES 3 A 200 VAL VAL VAL GLY LYS ASN THR ILE VAL THR ASN LYS HIS SEQRES 4 A 200 ILE ALA LYS SER ASN ASP ILE PHE LYS ASN ARG VAL SER SEQRES 5 A 200 ALA HIS HIS SER SER LYS GLY LYS GLY GLY GLY ASN TYR SEQRES 6 A 200 ASP VAL LYS ASP ILE VAL GLU TYR PRO GLY LYS GLU ASP SEQRES 7 A 200 LEU ALA ILE VAL HIS VAL HIS GLU THR SER THR GLU GLY SEQRES 8 A 200 LEU ASN PHE ASN LYS ASN VAL SER TYR THR LYS PHE ALA SEQRES 9 A 200 ASP GLY ALA LYS VAL LYS ASP ARG ILE SER VAL ILE GLY SEQRES 10 A 200 TYR PRO LYS GLY ALA GLN THR LYS TYR LYS MET PHE GLU SEQRES 11 A 200 SER THR GLY THR ILE ASN HIS ILE SER GLY THR PHE MET SEQRES 12 A 200 GLU PHE ASP ALA TYR ALA GLN PRO GLY ASN SER GLY SER SEQRES 13 A 200 PRO VAL LEU ASN SER LYS HIS GLU LEU ILE GLY ILE LEU SEQRES 14 A 200 TYR ALA GLY SER GLY LYS ASP GLU SER GLU LYS ASN PHE SEQRES 15 A 200 GLY VAL TYR PHE THR PRO GLN LEU LYS GLU PHE ILE GLN SEQRES 16 A 200 ASN ASN ILE GLU LYS SEQRES 1 B 200 GLU LYS ASN VAL LYS GLU ILE THR ASP ALA THR LYS GLU SEQRES 2 B 200 PRO TYR ASN SER VAL VAL ALA PHE VAL GLY GLY THR GLY SEQRES 3 B 200 VAL VAL VAL GLY LYS ASN THR ILE VAL THR ASN LYS HIS SEQRES 4 B 200 ILE ALA LYS SER ASN ASP ILE PHE LYS ASN ARG VAL SER SEQRES 5 B 200 ALA HIS HIS SER SER LYS GLY LYS GLY GLY GLY ASN TYR SEQRES 6 B 200 ASP VAL LYS ASP ILE VAL GLU TYR PRO GLY LYS GLU ASP SEQRES 7 B 200 LEU ALA ILE VAL HIS VAL HIS GLU THR SER THR GLU GLY SEQRES 8 B 200 LEU ASN PHE ASN LYS ASN VAL SER TYR THR LYS PHE ALA SEQRES 9 B 200 ASP GLY ALA LYS VAL LYS ASP ARG ILE SER VAL ILE GLY SEQRES 10 B 200 TYR PRO LYS GLY ALA GLN THR LYS TYR LYS MET PHE GLU SEQRES 11 B 200 SER THR GLY THR ILE ASN HIS ILE SER GLY THR PHE MET SEQRES 12 B 200 GLU PHE ASP ALA TYR ALA GLN PRO GLY ASN SER GLY SER SEQRES 13 B 200 PRO VAL LEU ASN SER LYS HIS GLU LEU ILE GLY ILE LEU SEQRES 14 B 200 TYR ALA GLY SER GLY LYS ASP GLU SER GLU LYS ASN PHE SEQRES 15 B 200 GLY VAL TYR PHE THR PRO GLN LEU LYS GLU PHE ILE GLN SEQRES 16 B 200 ASN ASN ILE GLU LYS HET VPF A 201 15 HET CL A 202 1 HET VPF B 201 15 HET CL B 202 1 HET CL B 203 1 HETNAM VPF N-(3-CARBOXYPROPANOYL)-L-VALYL-N-[(1S)-2-PHENYL-1- HETNAM 2 VPF PHOSPHONOETHYL]-L-PROLINAMIDE HETNAM CL CHLORIDE ION FORMUL 3 VPF 2(C22 H32 N3 O8 P) FORMUL 4 CL 3(CL 1-) FORMUL 8 HOH *286(H2 O) HELIX 1 1 PRO A 14 ASN A 16 5 3 HELIX 2 2 ASN A 37 LYS A 48 1 12 HELIX 3 3 PHE A 94 VAL A 98 5 5 HELIX 4 4 LYS A 120 LYS A 125 1 6 HELIX 5 5 THR A 187 ASN A 197 1 11 HELIX 6 6 PRO B 14 ASN B 16 5 3 HELIX 7 7 ASN B 37 LYS B 42 1 6 HELIX 8 8 PHE B 94 VAL B 98 5 5 HELIX 9 9 LYS B 120 THR B 124 5 5 HELIX 10 10 THR B 187 ILE B 198 1 12 SHEET 1 A 8 VAL A 4 ILE A 7 0 SHEET 2 A 8 MET A 128 SER A 139 -1 O MET A 128 N ILE A 7 SHEET 3 A 8 PHE A 142 PHE A 145 -1 O GLU A 144 N ASN A 136 SHEET 4 A 8 ASN A 181 TYR A 185 -1 O GLY A 183 N MET A 143 SHEET 5 A 8 LEU A 165 GLY A 172 -1 N TYR A 170 O PHE A 182 SHEET 6 A 8 PRO A 157 LEU A 159 -1 N VAL A 158 O GLY A 167 SHEET 7 A 8 ARG A 112 GLY A 117 -1 N SER A 114 O LEU A 159 SHEET 8 A 8 MET A 128 SER A 139 -1 O PHE A 129 N GLY A 117 SHEET 1 B 7 ASN A 64 TYR A 65 0 SHEET 2 B 7 VAL A 51 ALA A 53 -1 N VAL A 51 O TYR A 65 SHEET 3 B 7 VAL A 18 PHE A 21 -1 N ALA A 20 O SER A 52 SHEET 4 B 7 GLY A 24 GLY A 30 -1 O GLY A 24 N PHE A 21 SHEET 5 B 7 THR A 33 THR A 36 -1 O VAL A 35 N VAL A 27 SHEET 6 B 7 ALA A 80 VAL A 84 -1 O VAL A 82 N ILE A 34 SHEET 7 B 7 VAL A 67 GLU A 72 -1 N LYS A 68 O HIS A 83 SHEET 1 C 8 VAL B 4 ILE B 7 0 SHEET 2 C 8 MET B 128 SER B 139 -1 O MET B 128 N ILE B 7 SHEET 3 C 8 PHE B 142 PHE B 145 -1 O PHE B 142 N SER B 139 SHEET 4 C 8 ASN B 181 TYR B 185 -1 O ASN B 181 N PHE B 145 SHEET 5 C 8 LEU B 165 ALA B 171 -1 N ALA B 171 O PHE B 182 SHEET 6 C 8 PRO B 157 LEU B 159 -1 N VAL B 158 O GLY B 167 SHEET 7 C 8 ARG B 112 GLY B 117 -1 N SER B 114 O LEU B 159 SHEET 8 C 8 MET B 128 SER B 139 -1 O SER B 131 N VAL B 115 SHEET 1 D 7 VAL B 18 PHE B 21 0 SHEET 2 D 7 GLY B 24 GLY B 30 -1 O GLY B 24 N PHE B 21 SHEET 3 D 7 THR B 33 THR B 36 -1 O THR B 33 N GLY B 30 SHEET 4 D 7 ALA B 80 VAL B 84 -1 O VAL B 82 N ILE B 34 SHEET 5 D 7 ASN B 64 GLU B 72 -1 N LYS B 68 O HIS B 83 SHEET 6 D 7 ARG B 50 ALA B 53 -1 N VAL B 51 O TYR B 65 SHEET 7 D 7 VAL B 18 PHE B 21 -1 N ALA B 20 O SER B 52 LINK OG SER A 154 P VPF A 201 1555 1555 1.79 LINK OG SER B 154 P VPF B 201 1555 1555 1.77 CISPEP 1 GLU A 13 PRO A 14 0 -1.41 CISPEP 2 GLU B 13 PRO B 14 0 -1.20 CISPEP 3 GLU B 13 PRO B 14 0 -3.77 SITE 1 AC1 13 HIS A 39 ALA A 149 GLN A 150 PRO A 151 SITE 2 AC1 13 GLY A 152 ASN A 153 SER A 154 LEU A 169 SITE 3 AC1 13 ALA A 171 GLY A 172 ASN A 181 HOH A 346 SITE 4 AC1 13 HOH A 357 SITE 1 AC2 2 ASN A 93 ASN A 97 SITE 1 AC3 11 HIS B 39 PRO B 151 GLY B 152 ASN B 153 SITE 2 AC3 11 SER B 154 LEU B 169 ALA B 171 GLY B 172 SITE 3 AC3 11 ASN B 181 HOH B 262 HOH B 351 SITE 1 AC4 2 ASN B 93 ASN B 97 SITE 1 AC5 3 ASN A 49 ARG A 50 LYS B 48 CRYST1 61.232 61.232 221.123 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016331 0.009429 0.000000 0.00000 SCALE2 0.000000 0.018858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004522 0.00000