HEADER LIGASE 03-NOV-11 3UH0 TITLE CRYSTAL STRUCTURE OF THE YEAST MITOCHONDRIAL THREONYL-TRNA SYNTHETASE TITLE 2 (MST1) IN COMPLEX WITH THREONYL SULFAMOYL ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONYL-TRNA SYNTHETASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THREONINE--TRNA LIGASE, THRRS; COMPND 5 EC: 6.1.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: MST1, YKL194C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS THREONYL-TRNA SYNTHETASE, TRNA, THREONINE TRNA, THREONYL ADENYLATE, KEYWDS 2 THREONYL SULFAMOYL ADENYLATE, AMINOACYL-TRNA SYNTHETASE CLASS II, KEYWDS 3 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.PETERSON,J.LING,I.SIMONOVIC,C.CHO,D.SOLL,M.SIMONOVIC REVDAT 4 28-FEB-24 3UH0 1 REMARK SEQADV LINK REVDAT 3 06-JUN-12 3UH0 1 JRNL REVDAT 2 29-FEB-12 3UH0 1 JRNL REVDAT 1 22-FEB-12 3UH0 0 JRNL AUTH J.LING,K.M.PETERSON,I.SIMONOVIC,C.CHO,D.SOLL,M.SIMONOVIC JRNL TITL YEAST MITOCHONDRIAL THREONYL-TRNA SYNTHETASE RECOGNIZES TRNA JRNL TITL 2 ISOACCEPTORS BY DISTINCT MECHANISMS AND PROMOTES CUN CODON JRNL TITL 3 REASSIGNMENT. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 3281 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22343532 JRNL DOI 10.1073/PNAS.1200109109 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 28887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0285 - 4.3047 1.00 3262 172 0.1875 0.1947 REMARK 3 2 4.3047 - 3.4185 0.76 2337 123 0.1654 0.2458 REMARK 3 3 3.4185 - 2.9869 1.00 3049 162 0.1906 0.2666 REMARK 3 4 2.9869 - 2.7140 1.00 3011 157 0.2069 0.2730 REMARK 3 5 2.7140 - 2.5196 0.99 2971 155 0.2186 0.2454 REMARK 3 6 2.5196 - 2.3711 0.99 2955 157 0.2231 0.3035 REMARK 3 7 2.3711 - 2.2524 0.71 2120 113 0.2320 0.3654 REMARK 3 8 2.2524 - 2.1544 0.68 2010 101 0.2920 0.3501 REMARK 3 9 2.1544 - 2.0715 0.97 2887 154 0.2065 0.2537 REMARK 3 10 2.0715 - 2.0000 0.96 2836 155 0.2058 0.2912 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 47.95 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.76040 REMARK 3 B22 (A**2) : 0.76040 REMARK 3 B33 (A**2) : -1.52070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3594 REMARK 3 ANGLE : 0.908 4903 REMARK 3 CHIRALITY : 0.068 527 REMARK 3 PLANARITY : 0.004 637 REMARK 3 DIHEDRAL : 13.836 1344 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UH0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 76 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29757 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CACODYLATE, PH 6.5, 2M AMMONIUM REMARK 280 SULFATE, 0.2M NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.13800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.24200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.24200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 144.20700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.24200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.24200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.06900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.24200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.24200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 144.20700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.24200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.24200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.06900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 96.13800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -147.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -96.13800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 LEU A 16 REMARK 465 VAL A 17 REMARK 465 PRO A 18 REMARK 465 ARG A 19 REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 HIS A 22 REMARK 465 MET A 23 REMARK 465 ALA A 24 REMARK 465 SER A 25 REMARK 465 ALA A 26 REMARK 465 THR A 27 REMARK 465 LYS A 28 REMARK 465 ASN A 29 REMARK 465 ALA A 30 REMARK 465 SER A 31 REMARK 465 THR A 119 REMARK 465 ASP A 120 REMARK 465 GLU A 121 REMARK 465 GLU A 122 REMARK 465 LYS A 123 REMARK 465 GLU A 124 REMARK 465 LYS A 215 REMARK 465 GLY A 216 REMARK 465 GLY A 217 REMARK 465 SER A 218 REMARK 465 GLY A 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 32 OG REMARK 470 SER A 40 OG REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 ASP A 111 CG OD1 OD2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 THR A 118 OG1 CG2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 LYS A 193 CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 ARG A 283 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 284 CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 LYS A 306 CE NZ REMARK 470 GLN A 308 CG CD OE1 NE2 REMARK 470 TYR A 312 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 LYS A 358 CE NZ REMARK 470 LEU A 363 CD1 CD2 REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 GLU A 383 CG CD OE1 OE2 REMARK 470 TYR A 405 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 408 CG CD CE NZ REMARK 470 LEU A 412 CG CD1 CD2 REMARK 470 GLU A 435 CG CD OE1 OE2 REMARK 470 ARG A 439 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 462 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 109 N - CA - CB ANGL. DEV. = -15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 55 71.01 -150.08 REMARK 500 SER A 55 71.23 -150.22 REMARK 500 LYS A 83 -37.92 -139.33 REMARK 500 TYR A 109 -6.83 -140.30 REMARK 500 LYS A 209 -61.17 -150.17 REMARK 500 VAL A 288 -87.40 -113.32 REMARK 500 ASN A 438 51.13 -148.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 133 SG REMARK 620 2 HIS A 184 NE2 94.9 REMARK 620 3 HIS A 319 ND1 95.2 95.2 REMARK 620 4 TSB A1002 OG1 151.2 88.6 113.0 REMARK 620 5 TSB A1002 N 82.8 142.4 122.4 77.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TSB A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 463 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UGQ RELATED DB: PDB REMARK 900 RELATED ID: 3UGT RELATED DB: PDB DBREF 3UH0 A 26 462 UNP P07236 SYTM_YEAST 26 462 SEQADV 3UH0 MET A 3 UNP P07236 EXPRESSION TAG SEQADV 3UH0 GLY A 4 UNP P07236 EXPRESSION TAG SEQADV 3UH0 SER A 5 UNP P07236 EXPRESSION TAG SEQADV 3UH0 SER A 6 UNP P07236 EXPRESSION TAG SEQADV 3UH0 HIS A 7 UNP P07236 EXPRESSION TAG SEQADV 3UH0 HIS A 8 UNP P07236 EXPRESSION TAG SEQADV 3UH0 HIS A 9 UNP P07236 EXPRESSION TAG SEQADV 3UH0 HIS A 10 UNP P07236 EXPRESSION TAG SEQADV 3UH0 HIS A 11 UNP P07236 EXPRESSION TAG SEQADV 3UH0 HIS A 12 UNP P07236 EXPRESSION TAG SEQADV 3UH0 SER A 13 UNP P07236 EXPRESSION TAG SEQADV 3UH0 SER A 14 UNP P07236 EXPRESSION TAG SEQADV 3UH0 GLY A 15 UNP P07236 EXPRESSION TAG SEQADV 3UH0 LEU A 16 UNP P07236 EXPRESSION TAG SEQADV 3UH0 VAL A 17 UNP P07236 EXPRESSION TAG SEQADV 3UH0 PRO A 18 UNP P07236 EXPRESSION TAG SEQADV 3UH0 ARG A 19 UNP P07236 EXPRESSION TAG SEQADV 3UH0 GLY A 20 UNP P07236 EXPRESSION TAG SEQADV 3UH0 SER A 21 UNP P07236 EXPRESSION TAG SEQADV 3UH0 HIS A 22 UNP P07236 EXPRESSION TAG SEQADV 3UH0 MET A 23 UNP P07236 EXPRESSION TAG SEQADV 3UH0 ALA A 24 UNP P07236 EXPRESSION TAG SEQADV 3UH0 SER A 25 UNP P07236 EXPRESSION TAG SEQRES 1 A 460 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 460 LEU VAL PRO ARG GLY SER HIS MET ALA SER ALA THR LYS SEQRES 3 A 460 ASN ALA SER SER ALA THR PRO ALA THR MET THR SER MET SEQRES 4 A 460 VAL SER GLN ARG GLN ASP LEU PHE MET THR ASP PRO LEU SEQRES 5 A 460 SER PRO GLY SER MET PHE PHE LEU PRO ASN GLY ALA LYS SEQRES 6 A 460 ILE PHE ASN LYS LEU ILE GLU PHE MET LYS LEU GLN GLN SEQRES 7 A 460 LYS PHE LYS PHE GLY PHE ASN GLU VAL VAL THR PRO LEU SEQRES 8 A 460 ILE TYR LYS LYS THR LEU TRP GLU LYS SER GLY HIS TRP SEQRES 9 A 460 GLU ASN TYR ALA ASP ASP MET PHE LYS VAL GLU THR THR SEQRES 10 A 460 ASP GLU GLU LYS GLU GLU TYR GLY LEU LYS PRO MET ASN SEQRES 11 A 460 CYS PRO GLY HIS CYS LEU ILE PHE GLY LYS LYS ASP ARG SEQRES 12 A 460 SER TYR ASN GLU LEU PRO LEU ARG PHE SER ASP PHE SER SEQRES 13 A 460 PRO LEU HIS ARG ASN GLU ALA SER GLY ALA LEU SER GLY SEQRES 14 A 460 LEU THR ARG LEU ARG LYS PHE HIS GLN ASP ASP GLY HIS SEQRES 15 A 460 ILE PHE CYS THR PRO SER GLN VAL LYS SER GLU ILE PHE SEQRES 16 A 460 ASN SER LEU LYS LEU ILE ASP ILE VAL TYR ASN LYS ILE SEQRES 17 A 460 PHE PRO PHE VAL LYS GLY GLY SER GLY ALA GLU SER ASN SEQRES 18 A 460 TYR PHE ILE ASN PHE SER THR ARG PRO ASP HIS PHE ILE SEQRES 19 A 460 GLY ASP LEU LYS VAL TRP ASN HIS ALA GLU GLN VAL LEU SEQRES 20 A 460 LYS GLU ILE LEU GLU GLU SER GLY LYS PRO TRP LYS LEU SEQRES 21 A 460 ASN PRO GLY ASP GLY ALA PHE TYR GLY PRO LYS LEU ASP SEQRES 22 A 460 ILE MET VAL THR ASP HIS LEU ARG LYS THR HIS GLN VAL SEQRES 23 A 460 ALA THR ILE GLN LEU ASP PHE GLN LEU PRO GLU ARG PHE SEQRES 24 A 460 ASP LEU LYS PHE LYS ASP GLN ASP ASN SER TYR LYS ARG SEQRES 25 A 460 PRO ILE MET ILE HIS ARG ALA THR PHE GLY SER ILE GLU SEQRES 26 A 460 ARG PHE MET ALA LEU LEU ILE ASP SER ASN GLU GLY ARG SEQRES 27 A 460 TRP PRO PHE TRP LEU ASN PRO TYR GLN ALA VAL ILE ILE SEQRES 28 A 460 PRO VAL ASN THR LYS ASN VAL GLN GLN LEU ASP MET CYS SEQRES 29 A 460 THR ALA LEU GLN LYS LYS LEU ARG ASN GLU LEU GLU ALA SEQRES 30 A 460 ASP ASP MET GLU PRO VAL PRO LEU ASN ASP TRP HIS PHE SEQRES 31 A 460 ASN VAL ASP LEU ASP ILE ARG ASN GLU PRO VAL GLY TYR SEQRES 32 A 460 ARG ILE LYS SER ALA ILE LEU LYS ASN TYR SER TYR LEU SEQRES 33 A 460 ILE ILE VAL GLY ASP GLU GLU VAL GLN LEU GLN LYS TYR SEQRES 34 A 460 ASN ILE ARG GLU ARG ASP ASN ARG LYS SER PHE GLU LYS SEQRES 35 A 460 LEU THR MET SER GLN ILE TRP GLU LYS PHE ILE GLU LEU SEQRES 36 A 460 GLU LYS ASN TYR LYS HET ZN A 1 1 HET TSB A1002 30 HET SO4 A 463 5 HETNAM ZN ZINC ION HETNAM TSB 5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE HETNAM SO4 SULFATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 TSB C14 H21 N7 O8 S FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *318(H2 O) HELIX 1 1 THR A 34 ASP A 47 1 14 HELIX 2 2 LEU A 62 LYS A 83 1 22 HELIX 3 3 LYS A 97 SER A 103 1 7 HELIX 4 4 TYR A 109 MET A 113 5 5 HELIX 5 5 ASN A 132 GLY A 141 1 10 HELIX 6 6 SER A 146 LEU A 150 5 5 HELIX 7 7 THR A 188 SER A 190 5 3 HELIX 8 8 GLN A 191 LYS A 209 1 19 HELIX 9 9 ASP A 238 GLY A 257 1 20 HELIX 10 10 PHE A 295 PHE A 301 1 7 HELIX 11 11 ILE A 326 GLU A 338 1 13 HELIX 12 12 PRO A 342 ASN A 346 5 5 HELIX 13 13 ASN A 359 ASN A 375 1 17 HELIX 14 14 PRO A 402 ASN A 414 1 13 HELIX 15 15 GLY A 422 GLN A 429 1 8 HELIX 16 16 ASP A 437 ARG A 439 5 3 HELIX 17 17 THR A 446 ASN A 460 1 15 SHEET 1 A 2 PHE A 49 MET A 50 0 SHEET 2 A 2 PHE A 60 PHE A 61 -1 O PHE A 60 N MET A 50 SHEET 1 B 4 ASN A 87 GLU A 88 0 SHEET 2 B 4 LEU A 152 ASP A 156 1 O ARG A 153 N ASN A 87 SHEET 3 B 4 LYS A 177 CYS A 187 -1 O HIS A 184 N PHE A 154 SHEET 4 B 4 PRO A 159 HIS A 161 -1 N LEU A 160 O PHE A 178 SHEET 1 C 8 ASN A 87 GLU A 88 0 SHEET 2 C 8 LEU A 152 ASP A 156 1 O ARG A 153 N ASN A 87 SHEET 3 C 8 LYS A 177 CYS A 187 -1 O HIS A 184 N PHE A 154 SHEET 4 C 8 ILE A 316 SER A 325 -1 O ILE A 318 N ILE A 185 SHEET 5 C 8 THR A 285 ASP A 294 -1 N ASP A 294 O MET A 317 SHEET 6 C 8 LYS A 273 THR A 279 -1 N ILE A 276 O VAL A 288 SHEET 7 C 8 PHE A 225 SER A 229 -1 N ASN A 227 O ASP A 275 SHEET 8 C 8 TRP A 260 ASN A 263 1 O LYS A 261 N PHE A 228 SHEET 1 D 3 ILE A 94 LYS A 96 0 SHEET 2 D 3 TYR A 126 LEU A 128 -1 O GLY A 127 N TYR A 95 SHEET 3 D 3 LYS A 115 VAL A 116 -1 N VAL A 116 O TYR A 126 SHEET 1 E 2 PHE A 305 LYS A 306 0 SHEET 2 E 2 TYR A 312 LYS A 313 -1 O LYS A 313 N PHE A 305 SHEET 1 F 5 VAL A 394 LEU A 396 0 SHEET 2 F 5 ALA A 350 PRO A 354 1 N ILE A 352 O ASP A 395 SHEET 3 F 5 TYR A 417 VAL A 421 1 O ILE A 419 N ILE A 353 SHEET 4 F 5 TYR A 431 GLU A 435 -1 O ASN A 432 N ILE A 420 SHEET 5 F 5 GLU A 443 LEU A 445 -1 O LEU A 445 N TYR A 431 LINK ZN ZN A 1 SG CYS A 133 1555 1555 2.54 LINK ZN ZN A 1 NE2 HIS A 184 1555 1555 2.28 LINK ZN ZN A 1 ND1 HIS A 319 1555 1555 2.22 LINK ZN ZN A 1 OG1 TSB A1002 1555 1555 2.29 LINK ZN ZN A 1 N TSB A1002 1555 1555 2.41 CISPEP 1 LEU A 150 PRO A 151 0 -0.99 SITE 1 AC1 4 CYS A 133 HIS A 184 HIS A 319 TSB A1002 SITE 1 AC2 23 ZN A 1 MET A 131 CYS A 133 ARG A 162 SITE 2 AC2 23 GLU A 164 THR A 173 ARG A 174 LEU A 175 SITE 3 AC2 23 PHE A 178 GLN A 180 ASP A 182 HIS A 184 SITE 4 AC2 23 TYR A 270 GLN A 287 VAL A 288 GLN A 292 SITE 5 AC2 23 HIS A 319 GLY A 324 SER A 325 ARG A 328 SITE 6 AC2 23 HOH A 495 HOH A 591 HOH A 696 SITE 1 AC3 2 GLU A 443 LYS A 444 CRYST1 68.484 68.484 192.276 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014602 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014602 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005201 0.00000