data_3UI3 # _entry.id 3UI3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3UI3 RCSB RCSB068782 WWPDB D_1000068782 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UI3 _pdbx_database_status.recvd_initial_deposition_date 2011-11-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kwon, A.R.' 1 'Kim, J.H.' 2 'Lee, B.J.' 3 # _citation.id primary _citation.title 'Structural and biochemical characterization of HP0315 from Helicobacter pylori as a VapD protein with an endoribonuclease activity.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 1362-4962 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22241770 _citation.pdbx_database_id_DOI 10.1093/nar/gkr1305 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kwon, A.R.' 1 primary 'Kim, J.H.' 2 primary 'Park, S.J.' 3 primary 'Lee, K.Y.' 4 primary 'Min, Y.H.' 5 primary 'Im, H.' 6 primary 'Lee, I.' 7 primary 'Lee, K.Y.' 8 primary 'Lee, B.J.' 9 # _cell.entry_id 3UI3 _cell.length_a 77.810 _cell.length_b 77.810 _cell.length_c 106.310 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UI3 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Immunoglobulin G-binding protein G, Virulence-associated protein D' 18722.588 2 ? ? ? ;The fusion protein of N-terminal tags (MSE)Q, the residues 304-357 from IgG-binding protein G, linker GS, residues 1-94 from vapD and C-terminal tags LEHHHHHH ; 2 water nat water 18.015 6 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'IgG-binding protein G' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS(MSE)YALAFDLKIEILK KEYGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINKLSQIEWFKKSVRDIRAFKVEDFSDFTEIVKS LEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSMYALAFDLKIEILKKEYGEPYN KAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINKLSQIEWFKKSVRDIRAFKVEDFSDFTEIVKSLEHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLN n 1 3 TYR n 1 4 LYS n 1 5 LEU n 1 6 ILE n 1 7 LEU n 1 8 ASN n 1 9 GLY n 1 10 LYS n 1 11 THR n 1 12 LEU n 1 13 LYS n 1 14 GLY n 1 15 GLU n 1 16 THR n 1 17 THR n 1 18 THR n 1 19 GLU n 1 20 ALA n 1 21 VAL n 1 22 ASP n 1 23 ALA n 1 24 ALA n 1 25 THR n 1 26 ALA n 1 27 GLU n 1 28 LYS n 1 29 VAL n 1 30 PHE n 1 31 LYS n 1 32 GLN n 1 33 TYR n 1 34 ALA n 1 35 ASN n 1 36 ASP n 1 37 ASN n 1 38 GLY n 1 39 VAL n 1 40 ASP n 1 41 GLY n 1 42 GLU n 1 43 TRP n 1 44 THR n 1 45 TYR n 1 46 ASP n 1 47 ASP n 1 48 ALA n 1 49 THR n 1 50 LYS n 1 51 THR n 1 52 PHE n 1 53 THR n 1 54 VAL n 1 55 THR n 1 56 GLU n 1 57 GLY n 1 58 SER n 1 59 MSE n 1 60 TYR n 1 61 ALA n 1 62 LEU n 1 63 ALA n 1 64 PHE n 1 65 ASP n 1 66 LEU n 1 67 LYS n 1 68 ILE n 1 69 GLU n 1 70 ILE n 1 71 LEU n 1 72 LYS n 1 73 LYS n 1 74 GLU n 1 75 TYR n 1 76 GLY n 1 77 GLU n 1 78 PRO n 1 79 TYR n 1 80 ASN n 1 81 LYS n 1 82 ALA n 1 83 TYR n 1 84 ASP n 1 85 ASP n 1 86 LEU n 1 87 ARG n 1 88 GLN n 1 89 GLU n 1 90 LEU n 1 91 GLU n 1 92 LEU n 1 93 LEU n 1 94 GLY n 1 95 PHE n 1 96 GLU n 1 97 TRP n 1 98 THR n 1 99 GLN n 1 100 GLY n 1 101 SER n 1 102 VAL n 1 103 TYR n 1 104 VAL n 1 105 ASN n 1 106 TYR n 1 107 SER n 1 108 LYS n 1 109 GLU n 1 110 ASN n 1 111 THR n 1 112 LEU n 1 113 ALA n 1 114 GLN n 1 115 VAL n 1 116 TYR n 1 117 LYS n 1 118 ALA n 1 119 ILE n 1 120 ASN n 1 121 LYS n 1 122 LEU n 1 123 SER n 1 124 GLN n 1 125 ILE n 1 126 GLU n 1 127 TRP n 1 128 PHE n 1 129 LYS n 1 130 LYS n 1 131 SER n 1 132 VAL n 1 133 ARG n 1 134 ASP n 1 135 ILE n 1 136 ARG n 1 137 ALA n 1 138 PHE n 1 139 LYS n 1 140 VAL n 1 141 GLU n 1 142 ASP n 1 143 PHE n 1 144 SER n 1 145 ASP n 1 146 PHE n 1 147 THR n 1 148 GLU n 1 149 ILE n 1 150 VAL n 1 151 LYS n 1 152 SER n 1 153 LEU n 1 154 GLU n 1 155 HIS n 1 156 HIS n 1 157 HIS n 1 158 HIS n 1 159 HIS n 1 160 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 3 56 ? ? 'HP_0315, spg, vapD' ? 26695 ? ? ? ? Streptococcus 1320 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? 'pET21a(+)' ? ? 1 2 sample ? 59 152 ? ? 'HP_0315, spg, vapD' ? 26695 ? ? ? ? 'Helicobacter pylori' 85962 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? 'pET21a(+)' ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SPG2_STRSG P19909 1 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE 304 ? 2 UNP VAPD_HELPY O05728 1 ;MYALAFDLKIEILKKEYGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINKLSQIEWFKKSVRDIRAF KVEDFSDFTEIVKS ; 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UI3 A 3 ? 56 ? P19909 304 ? 357 ? 3 56 2 2 3UI3 A 59 ? 152 ? O05728 1 ? 94 ? 59 152 3 1 3UI3 B 3 ? 56 ? P19909 304 ? 357 ? 3 56 4 2 3UI3 B 59 ? 152 ? O05728 1 ? 94 ? 59 152 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UI3 MSE A 1 ? UNP P19909 ? ? 'EXPRESSION TAG' 1 1 1 3UI3 GLN A 2 ? UNP P19909 ? ? 'EXPRESSION TAG' 2 2 1 3UI3 GLY A 57 ? UNP P19909 ? ? LINKER 57 3 1 3UI3 SER A 58 ? UNP P19909 ? ? LINKER 58 4 2 3UI3 LEU A 153 ? UNP O05728 ? ? 'EXPRESSION TAG' 153 5 2 3UI3 GLU A 154 ? UNP O05728 ? ? 'EXPRESSION TAG' 154 6 2 3UI3 HIS A 155 ? UNP O05728 ? ? 'EXPRESSION TAG' 155 7 2 3UI3 HIS A 156 ? UNP O05728 ? ? 'EXPRESSION TAG' 156 8 2 3UI3 HIS A 157 ? UNP O05728 ? ? 'EXPRESSION TAG' 157 9 2 3UI3 HIS A 158 ? UNP O05728 ? ? 'EXPRESSION TAG' 158 10 2 3UI3 HIS A 159 ? UNP O05728 ? ? 'EXPRESSION TAG' 159 11 2 3UI3 HIS A 160 ? UNP O05728 ? ? 'EXPRESSION TAG' 160 12 3 3UI3 MSE B 1 ? UNP P19909 ? ? 'EXPRESSION TAG' 1 13 3 3UI3 GLN B 2 ? UNP P19909 ? ? 'EXPRESSION TAG' 2 14 3 3UI3 GLY B 57 ? UNP P19909 ? ? LINKER 57 15 3 3UI3 SER B 58 ? UNP P19909 ? ? LINKER 58 16 4 3UI3 LEU B 153 ? UNP O05728 ? ? 'EXPRESSION TAG' 153 17 4 3UI3 GLU B 154 ? UNP O05728 ? ? 'EXPRESSION TAG' 154 18 4 3UI3 HIS B 155 ? UNP O05728 ? ? 'EXPRESSION TAG' 155 19 4 3UI3 HIS B 156 ? UNP O05728 ? ? 'EXPRESSION TAG' 156 20 4 3UI3 HIS B 157 ? UNP O05728 ? ? 'EXPRESSION TAG' 157 21 4 3UI3 HIS B 158 ? UNP O05728 ? ? 'EXPRESSION TAG' 158 22 4 3UI3 HIS B 159 ? UNP O05728 ? ? 'EXPRESSION TAG' 159 23 4 3UI3 HIS B 160 ? UNP O05728 ? ? 'EXPRESSION TAG' 160 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3UI3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.42 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;0.2M (NH4)2SO4, 9% PEG3350, 5-8% glycerol, 100mM 2-(N-morpholino)ethanesulfonic acid', pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2006-06-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97951 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 4A' _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97951 # _reflns.entry_id 3UI3 _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.8 _reflns.number_obs 9541 _reflns.number_all 9560 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 57.51 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.512 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.25 _reflns_shell.pdbx_redundancy 11.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 926 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3UI3 _refine.ls_number_reflns_obs 8605 _refine.ls_number_reflns_all 9560 _refine.pdbx_ls_sigma_I 1.0 _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.0 _refine.ls_d_res_high 2.8 _refine.ls_percent_reflns_obs 90.0 _refine.ls_R_factor_obs 0.2505 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2505 _refine.ls_R_factor_R_free 0.2837 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 883 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 95.9 _refine.aniso_B[1][1] 10.13 _refine.aniso_B[2][2] 10.13 _refine.aniso_B[3][3] -20.26 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model anisotrophic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3UI3 _refine_analyze.Luzzati_coordinate_error_obs 0.39 _refine_analyze.Luzzati_sigma_a_obs 0.46 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.46 _refine_analyze.Luzzati_sigma_a_free 0.46 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2042 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 2048 _refine_hist.d_res_high 2.8 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_angle_deg 1.2 ? ? ? ? 'X-RAY DIFFRACTION' c_bond_d 0.007 ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_deg 22.3 ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_deg 0.62 ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.336 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.342 _refine_ls_shell.R_factor_R_free_error 0.032 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 112 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1118 _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3UI3 _struct.title 'Structural and Biochemical Characterization of HP0315 from Helicobacter pylori as a VapD Protein with an Endoribonuclease Activity' _struct.pdbx_descriptor 'Immunoglobulin G-binding protein G, Virulence-associated protein D' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UI3 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text 'ferrodoxin-like fold, virulence associated protein D, ribonuclease, RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 22 ? ASP A 36 ? ASP A 22 ASP A 36 1 ? 15 HELX_P HELX_P2 2 ASP A 47 ? THR A 49 ? ASP A 47 THR A 49 5 ? 3 HELX_P HELX_P3 3 LYS A 67 ? TYR A 75 ? LYS A 67 TYR A 75 1 ? 9 HELX_P HELX_P4 4 TYR A 79 ? LEU A 93 ? TYR A 79 LEU A 93 1 ? 15 HELX_P HELX_P5 5 ASN A 110 ? GLN A 124 ? ASN A 110 GLN A 124 1 ? 15 HELX_P HELX_P6 6 ILE A 125 ? SER A 131 ? ILE A 125 SER A 131 1 ? 7 HELX_P HELX_P7 7 PHE A 146 ? SER A 152 ? PHE A 146 SER A 152 1 ? 7 HELX_P HELX_P8 8 LYS B 67 ? GLU B 74 ? LYS B 67 GLU B 74 1 ? 8 HELX_P HELX_P9 9 ASN B 80 ? LEU B 93 ? ASN B 80 LEU B 93 1 ? 14 HELX_P HELX_P10 10 ASN B 110 ? ILE B 125 ? ASN B 110 ILE B 125 1 ? 16 HELX_P HELX_P11 11 ILE B 125 ? SER B 131 ? ILE B 125 SER B 131 1 ? 7 HELX_P HELX_P12 12 PHE B 146 ? GLU B 154 ? PHE B 146 GLU B 154 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A SER 58 C ? ? ? 1_555 A MSE 59 N ? ? A SER 58 A MSE 59 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 59 C ? ? ? 1_555 A TYR 60 N ? ? A MSE 59 A TYR 60 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? B SER 58 C ? ? ? 1_555 B MSE 59 N ? ? B SER 58 B MSE 59 1_555 ? ? ? ? ? ? ? 1.335 ? covale4 covale ? ? B MSE 59 C ? ? ? 1_555 B TYR 60 N ? ? B MSE 59 B TYR 60 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 77 A . ? GLU 77 A PRO 78 A ? PRO 78 A 1 -0.05 2 GLU 77 B . ? GLU 77 B PRO 78 B ? PRO 78 B 1 0.04 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 6 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 4 ? ILE A 6 ? LYS A 4 ILE A 6 A 2 THR A 51 ? GLU A 56 ? THR A 51 GLU A 56 A 3 GLY A 41 ? ASP A 46 ? GLY A 41 ASP A 46 B 1 PHE A 95 ? THR A 98 ? PHE A 95 THR A 98 B 2 VAL A 102 ? ASN A 105 ? VAL A 102 ASN A 105 B 3 MSE A 59 ? LEU A 66 ? MSE A 59 LEU A 66 B 4 VAL A 132 ? VAL A 140 ? VAL A 132 VAL A 140 B 5 VAL B 132 ? SER B 144 ? VAL B 132 SER B 144 B 6 SER A 144 ? ASP A 145 ? SER A 144 ASP A 145 C 1 PHE A 95 ? THR A 98 ? PHE A 95 THR A 98 C 2 VAL A 102 ? ASN A 105 ? VAL A 102 ASN A 105 C 3 MSE A 59 ? LEU A 66 ? MSE A 59 LEU A 66 C 4 VAL A 132 ? VAL A 140 ? VAL A 132 VAL A 140 C 5 VAL B 132 ? SER B 144 ? VAL B 132 SER B 144 C 6 MSE B 59 ? LEU B 66 ? MSE B 59 LEU B 66 C 7 VAL B 102 ? ASN B 105 ? VAL B 102 ASN B 105 C 8 GLU B 96 ? GLN B 99 ? GLU B 96 GLN B 99 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 6 ? N ILE A 6 O PHE A 52 ? O PHE A 52 A 2 3 O THR A 55 ? O THR A 55 N GLU A 42 ? N GLU A 42 B 1 2 N GLU A 96 ? N GLU A 96 O VAL A 104 ? O VAL A 104 B 2 3 O TYR A 103 ? O TYR A 103 N LEU A 62 ? N LEU A 62 B 3 4 N ASP A 65 ? N ASP A 65 O ARG A 133 ? O ARG A 133 B 4 5 N LYS A 139 ? N LYS A 139 O ASP B 142 ? O ASP B 142 B 5 6 O ALA B 137 ? O ALA B 137 N SER A 144 ? N SER A 144 C 1 2 N GLU A 96 ? N GLU A 96 O VAL A 104 ? O VAL A 104 C 2 3 O TYR A 103 ? O TYR A 103 N LEU A 62 ? N LEU A 62 C 3 4 N ASP A 65 ? N ASP A 65 O ARG A 133 ? O ARG A 133 C 4 5 N LYS A 139 ? N LYS A 139 O ASP B 142 ? O ASP B 142 C 5 6 O ARG B 136 ? O ARG B 136 N ALA B 63 ? N ALA B 63 C 6 7 N LEU B 62 ? N LEU B 62 O TYR B 103 ? O TYR B 103 C 7 8 O VAL B 104 ? O VAL B 104 N GLU B 96 ? N GLU B 96 # _database_PDB_matrix.entry_id 3UI3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UI3 _atom_sites.fract_transf_matrix[1][1] 0.012852 _atom_sites.fract_transf_matrix[1][2] 0.007420 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014840 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009406 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 GLN 2 2 ? ? ? A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 ASN 8 8 ? ? ? A . n A 1 9 GLY 9 9 ? ? ? A . n A 1 10 LYS 10 10 ? ? ? A . n A 1 11 THR 11 11 ? ? ? A . n A 1 12 LEU 12 12 ? ? ? A . n A 1 13 LYS 13 13 ? ? ? A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 GLY 38 38 ? ? ? A . n A 1 39 VAL 39 39 ? ? ? A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 TRP 43 43 43 TRP TRP A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 MSE 59 59 59 MSE MSE A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 TRP 97 97 97 TRP TRP A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 ASN 120 120 120 ASN ASN A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 GLN 124 124 124 GLN GLN A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 TRP 127 127 127 TRP TRP A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 ARG 136 136 136 ARG ARG A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 PHE 138 138 138 PHE PHE A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 ASP 142 142 142 ASP ASP A . n A 1 143 PHE 143 143 143 PHE PHE A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 GLU 148 148 148 GLU GLU A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 LYS 151 151 151 LYS LYS A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 GLU 154 154 ? ? ? A . n A 1 155 HIS 155 155 ? ? ? A . n A 1 156 HIS 156 156 ? ? ? A . n A 1 157 HIS 157 157 ? ? ? A . n A 1 158 HIS 158 158 ? ? ? A . n A 1 159 HIS 159 159 ? ? ? A . n A 1 160 HIS 160 160 ? ? ? A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 GLN 2 2 ? ? ? B . n B 1 3 TYR 3 3 ? ? ? B . n B 1 4 LYS 4 4 ? ? ? B . n B 1 5 LEU 5 5 ? ? ? B . n B 1 6 ILE 6 6 ? ? ? B . n B 1 7 LEU 7 7 ? ? ? B . n B 1 8 ASN 8 8 ? ? ? B . n B 1 9 GLY 9 9 ? ? ? B . n B 1 10 LYS 10 10 ? ? ? B . n B 1 11 THR 11 11 ? ? ? B . n B 1 12 LEU 12 12 ? ? ? B . n B 1 13 LYS 13 13 ? ? ? B . n B 1 14 GLY 14 14 ? ? ? B . n B 1 15 GLU 15 15 ? ? ? B . n B 1 16 THR 16 16 ? ? ? B . n B 1 17 THR 17 17 ? ? ? B . n B 1 18 THR 18 18 ? ? ? B . n B 1 19 GLU 19 19 ? ? ? B . n B 1 20 ALA 20 20 ? ? ? B . n B 1 21 VAL 21 21 ? ? ? B . n B 1 22 ASP 22 22 ? ? ? B . n B 1 23 ALA 23 23 ? ? ? B . n B 1 24 ALA 24 24 ? ? ? B . n B 1 25 THR 25 25 ? ? ? B . n B 1 26 ALA 26 26 ? ? ? B . n B 1 27 GLU 27 27 ? ? ? B . n B 1 28 LYS 28 28 ? ? ? B . n B 1 29 VAL 29 29 ? ? ? B . n B 1 30 PHE 30 30 ? ? ? B . n B 1 31 LYS 31 31 ? ? ? B . n B 1 32 GLN 32 32 ? ? ? B . n B 1 33 TYR 33 33 ? ? ? B . n B 1 34 ALA 34 34 ? ? ? B . n B 1 35 ASN 35 35 ? ? ? B . n B 1 36 ASP 36 36 ? ? ? B . n B 1 37 ASN 37 37 ? ? ? B . n B 1 38 GLY 38 38 ? ? ? B . n B 1 39 VAL 39 39 ? ? ? B . n B 1 40 ASP 40 40 ? ? ? B . n B 1 41 GLY 41 41 ? ? ? B . n B 1 42 GLU 42 42 ? ? ? B . n B 1 43 TRP 43 43 ? ? ? B . n B 1 44 THR 44 44 ? ? ? B . n B 1 45 TYR 45 45 ? ? ? B . n B 1 46 ASP 46 46 ? ? ? B . n B 1 47 ASP 47 47 ? ? ? B . n B 1 48 ALA 48 48 ? ? ? B . n B 1 49 THR 49 49 ? ? ? B . n B 1 50 LYS 50 50 ? ? ? B . n B 1 51 THR 51 51 ? ? ? B . n B 1 52 PHE 52 52 ? ? ? B . n B 1 53 THR 53 53 ? ? ? B . n B 1 54 VAL 54 54 ? ? ? B . n B 1 55 THR 55 55 ? ? ? B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 GLY 57 57 57 GLY GLY B . n B 1 58 SER 58 58 58 SER SER B . n B 1 59 MSE 59 59 59 MSE MSE B . n B 1 60 TYR 60 60 60 TYR TYR B . n B 1 61 ALA 61 61 61 ALA ALA B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 ALA 63 63 63 ALA ALA B . n B 1 64 PHE 64 64 64 PHE PHE B . n B 1 65 ASP 65 65 65 ASP ASP B . n B 1 66 LEU 66 66 66 LEU LEU B . n B 1 67 LYS 67 67 67 LYS LYS B . n B 1 68 ILE 68 68 68 ILE ILE B . n B 1 69 GLU 69 69 69 GLU GLU B . n B 1 70 ILE 70 70 70 ILE ILE B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 LYS 72 72 72 LYS LYS B . n B 1 73 LYS 73 73 73 LYS LYS B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 TYR 75 75 75 TYR TYR B . n B 1 76 GLY 76 76 76 GLY GLY B . n B 1 77 GLU 77 77 77 GLU GLU B . n B 1 78 PRO 78 78 78 PRO PRO B . n B 1 79 TYR 79 79 79 TYR TYR B . n B 1 80 ASN 80 80 80 ASN ASN B . n B 1 81 LYS 81 81 81 LYS LYS B . n B 1 82 ALA 82 82 82 ALA ALA B . n B 1 83 TYR 83 83 83 TYR TYR B . n B 1 84 ASP 84 84 84 ASP ASP B . n B 1 85 ASP 85 85 85 ASP ASP B . n B 1 86 LEU 86 86 86 LEU LEU B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 GLN 88 88 88 GLN GLN B . n B 1 89 GLU 89 89 89 GLU GLU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 GLU 91 91 91 GLU GLU B . n B 1 92 LEU 92 92 92 LEU LEU B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 PHE 95 95 95 PHE PHE B . n B 1 96 GLU 96 96 96 GLU GLU B . n B 1 97 TRP 97 97 97 TRP TRP B . n B 1 98 THR 98 98 98 THR THR B . n B 1 99 GLN 99 99 99 GLN GLN B . n B 1 100 GLY 100 100 100 GLY GLY B . n B 1 101 SER 101 101 101 SER SER B . n B 1 102 VAL 102 102 102 VAL VAL B . n B 1 103 TYR 103 103 103 TYR TYR B . n B 1 104 VAL 104 104 104 VAL VAL B . n B 1 105 ASN 105 105 105 ASN ASN B . n B 1 106 TYR 106 106 106 TYR TYR B . n B 1 107 SER 107 107 107 SER SER B . n B 1 108 LYS 108 108 108 LYS LYS B . n B 1 109 GLU 109 109 109 GLU GLU B . n B 1 110 ASN 110 110 110 ASN ASN B . n B 1 111 THR 111 111 111 THR THR B . n B 1 112 LEU 112 112 112 LEU LEU B . n B 1 113 ALA 113 113 113 ALA ALA B . n B 1 114 GLN 114 114 114 GLN GLN B . n B 1 115 VAL 115 115 115 VAL VAL B . n B 1 116 TYR 116 116 116 TYR TYR B . n B 1 117 LYS 117 117 117 LYS LYS B . n B 1 118 ALA 118 118 118 ALA ALA B . n B 1 119 ILE 119 119 119 ILE ILE B . n B 1 120 ASN 120 120 120 ASN ASN B . n B 1 121 LYS 121 121 121 LYS LYS B . n B 1 122 LEU 122 122 122 LEU LEU B . n B 1 123 SER 123 123 123 SER SER B . n B 1 124 GLN 124 124 124 GLN GLN B . n B 1 125 ILE 125 125 125 ILE ILE B . n B 1 126 GLU 126 126 126 GLU GLU B . n B 1 127 TRP 127 127 127 TRP TRP B . n B 1 128 PHE 128 128 128 PHE PHE B . n B 1 129 LYS 129 129 129 LYS LYS B . n B 1 130 LYS 130 130 130 LYS LYS B . n B 1 131 SER 131 131 131 SER SER B . n B 1 132 VAL 132 132 132 VAL VAL B . n B 1 133 ARG 133 133 133 ARG ARG B . n B 1 134 ASP 134 134 134 ASP ASP B . n B 1 135 ILE 135 135 135 ILE ILE B . n B 1 136 ARG 136 136 136 ARG ARG B . n B 1 137 ALA 137 137 137 ALA ALA B . n B 1 138 PHE 138 138 138 PHE PHE B . n B 1 139 LYS 139 139 139 LYS LYS B . n B 1 140 VAL 140 140 140 VAL VAL B . n B 1 141 GLU 141 141 141 GLU GLU B . n B 1 142 ASP 142 142 142 ASP ASP B . n B 1 143 PHE 143 143 143 PHE PHE B . n B 1 144 SER 144 144 144 SER SER B . n B 1 145 ASP 145 145 145 ASP ASP B . n B 1 146 PHE 146 146 146 PHE PHE B . n B 1 147 THR 147 147 147 THR THR B . n B 1 148 GLU 148 148 148 GLU GLU B . n B 1 149 ILE 149 149 149 ILE ILE B . n B 1 150 VAL 150 150 150 VAL VAL B . n B 1 151 LYS 151 151 151 LYS LYS B . n B 1 152 SER 152 152 152 SER SER B . n B 1 153 LEU 153 153 153 LEU LEU B . n B 1 154 GLU 154 154 154 GLU GLU B . n B 1 155 HIS 155 155 155 HIS HIS B . n B 1 156 HIS 156 156 156 HIS HIS B . n B 1 157 HIS 157 157 157 HIS HIS B . n B 1 158 HIS 158 158 158 HIS HIS B . n B 1 159 HIS 159 159 ? ? ? B . n B 1 160 HIS 160 160 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 2 HOH HOH A . C 2 HOH 2 202 3 HOH HOH A . C 2 HOH 3 203 6 HOH HOH A . D 2 HOH 1 201 1 HOH HOH B . D 2 HOH 2 202 4 HOH HOH B . D 2 HOH 3 203 5 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 59 A MSE 59 ? MET SELENOMETHIONINE 2 B MSE 59 B MSE 59 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3350 ? 1 MORE -15 ? 1 'SSA (A^2)' 13660 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-08 2 'Structure model' 1 1 2017-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 2 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 2 'Structure model' software # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SnB phasing . ? 2 CNS refinement 1.1 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 19 ? ? -109.90 48.08 2 1 VAL A 29 ? ? -58.13 -72.39 3 1 TYR A 33 ? ? -45.41 -81.89 4 1 ASP A 36 ? ? -113.95 64.39 5 1 GLN A 99 ? ? -26.33 121.34 6 1 SER A 101 ? ? -60.45 51.59 7 1 SER A 107 ? ? -28.02 -58.26 8 1 LYS A 108 ? ? 82.03 -2.02 9 1 GLU A 126 ? ? -28.78 -67.57 10 1 SER A 152 ? ? -47.74 155.49 11 1 GLU B 74 ? ? -69.61 4.26 12 1 TYR B 75 ? ? -138.55 -52.11 13 1 GLN B 99 ? ? 176.48 120.54 14 1 GLU B 109 ? ? -81.73 -136.84 15 1 ASP B 142 ? ? 176.88 148.55 16 1 SER B 144 ? ? -176.08 118.80 17 1 PHE B 146 ? ? -14.68 -49.43 18 1 GLU B 148 ? ? -18.96 -75.39 19 1 GLU B 154 ? ? -32.22 118.39 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A GLN 2 ? A GLN 2 3 1 Y 1 A ASN 8 ? A ASN 8 4 1 Y 1 A GLY 9 ? A GLY 9 5 1 Y 1 A LYS 10 ? A LYS 10 6 1 Y 1 A THR 11 ? A THR 11 7 1 Y 1 A LEU 12 ? A LEU 12 8 1 Y 1 A LYS 13 ? A LYS 13 9 1 Y 1 A GLY 38 ? A GLY 38 10 1 Y 1 A VAL 39 ? A VAL 39 11 1 Y 1 A GLU 154 ? A GLU 154 12 1 Y 1 A HIS 155 ? A HIS 155 13 1 Y 1 A HIS 156 ? A HIS 156 14 1 Y 1 A HIS 157 ? A HIS 157 15 1 Y 1 A HIS 158 ? A HIS 158 16 1 Y 1 A HIS 159 ? A HIS 159 17 1 Y 1 A HIS 160 ? A HIS 160 18 1 Y 1 B MSE 1 ? B MSE 1 19 1 Y 1 B GLN 2 ? B GLN 2 20 1 Y 1 B TYR 3 ? B TYR 3 21 1 Y 1 B LYS 4 ? B LYS 4 22 1 Y 1 B LEU 5 ? B LEU 5 23 1 Y 1 B ILE 6 ? B ILE 6 24 1 Y 1 B LEU 7 ? B LEU 7 25 1 Y 1 B ASN 8 ? B ASN 8 26 1 Y 1 B GLY 9 ? B GLY 9 27 1 Y 1 B LYS 10 ? B LYS 10 28 1 Y 1 B THR 11 ? B THR 11 29 1 Y 1 B LEU 12 ? B LEU 12 30 1 Y 1 B LYS 13 ? B LYS 13 31 1 Y 1 B GLY 14 ? B GLY 14 32 1 Y 1 B GLU 15 ? B GLU 15 33 1 Y 1 B THR 16 ? B THR 16 34 1 Y 1 B THR 17 ? B THR 17 35 1 Y 1 B THR 18 ? B THR 18 36 1 Y 1 B GLU 19 ? B GLU 19 37 1 Y 1 B ALA 20 ? B ALA 20 38 1 Y 1 B VAL 21 ? B VAL 21 39 1 Y 1 B ASP 22 ? B ASP 22 40 1 Y 1 B ALA 23 ? B ALA 23 41 1 Y 1 B ALA 24 ? B ALA 24 42 1 Y 1 B THR 25 ? B THR 25 43 1 Y 1 B ALA 26 ? B ALA 26 44 1 Y 1 B GLU 27 ? B GLU 27 45 1 Y 1 B LYS 28 ? B LYS 28 46 1 Y 1 B VAL 29 ? B VAL 29 47 1 Y 1 B PHE 30 ? B PHE 30 48 1 Y 1 B LYS 31 ? B LYS 31 49 1 Y 1 B GLN 32 ? B GLN 32 50 1 Y 1 B TYR 33 ? B TYR 33 51 1 Y 1 B ALA 34 ? B ALA 34 52 1 Y 1 B ASN 35 ? B ASN 35 53 1 Y 1 B ASP 36 ? B ASP 36 54 1 Y 1 B ASN 37 ? B ASN 37 55 1 Y 1 B GLY 38 ? B GLY 38 56 1 Y 1 B VAL 39 ? B VAL 39 57 1 Y 1 B ASP 40 ? B ASP 40 58 1 Y 1 B GLY 41 ? B GLY 41 59 1 Y 1 B GLU 42 ? B GLU 42 60 1 Y 1 B TRP 43 ? B TRP 43 61 1 Y 1 B THR 44 ? B THR 44 62 1 Y 1 B TYR 45 ? B TYR 45 63 1 Y 1 B ASP 46 ? B ASP 46 64 1 Y 1 B ASP 47 ? B ASP 47 65 1 Y 1 B ALA 48 ? B ALA 48 66 1 Y 1 B THR 49 ? B THR 49 67 1 Y 1 B LYS 50 ? B LYS 50 68 1 Y 1 B THR 51 ? B THR 51 69 1 Y 1 B PHE 52 ? B PHE 52 70 1 Y 1 B THR 53 ? B THR 53 71 1 Y 1 B VAL 54 ? B VAL 54 72 1 Y 1 B THR 55 ? B THR 55 73 1 Y 1 B HIS 159 ? B HIS 159 74 1 Y 1 B HIS 160 ? B HIS 160 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #