HEADER IMMUNE SYSTEM 05-NOV-11 3UIL TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF PGRP-S WITH LAURIC ACID AT 2.2 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN RECOGNITION PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PEPTIDOGLYCAN RECOGNITION PROTEIN SHORT, PGRP-S SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_COMMON: CAMEL; SOURCE 4 ORGANISM_TAXID: 9838 KEYWDS IMMUNE RESPONSE, SECRETED, ANTIMICROBIAL, PGRP, ANTIBIOTIC, KEYWDS 2 PEPTIDOGLYCAN BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.DUBE,P.SHARMA,M.SINHA,P.KAUR,S.SHARMA,T.P.SINGH REVDAT 3 01-NOV-23 3UIL 1 REMARK REVDAT 2 15-MAY-13 3UIL 1 JRNL REVDAT 1 11-JUL-12 3UIL 0 JRNL AUTH P.SHARMA,S.YAMINI,D.DUBE,A.SINGH,G.MAL,N.PANDEY,M.SINHA, JRNL AUTH 2 A.K.SINGH,S.DEY,P.KAUR,D.K.MITRA,S.SHARMA,T.P.SINGH JRNL TITL STRUCTURAL BASIS OF THE BINDING OF FATTY ACIDS TO JRNL TITL 2 PEPTIDOGLYCAN RECOGNITION PROTEIN, PGRP-S THROUGH SECOND JRNL TITL 3 BINDING SITE JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 529 1 2013 JRNL REFN ISSN 0003-9861 JRNL PMID 23149273 JRNL DOI 10.1016/J.ABB.2012.11.001 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 33252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1774 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2433 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.6040 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.6160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5347 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 619 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.02000 REMARK 3 B22 (A**2) : -3.26000 REMARK 3 B33 (A**2) : -0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.426 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5525 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7532 ; 1.886 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 7.703 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;37.675 ;22.090 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 816 ;16.037 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;16.427 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 776 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4384 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3403 ; 1.222 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5462 ; 2.156 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2122 ; 3.128 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2070 ; 4.828 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9592 -36.8368 -45.7377 REMARK 3 T TENSOR REMARK 3 T11: 0.0962 T22: 0.0720 REMARK 3 T33: 0.0957 T12: 0.0058 REMARK 3 T13: -0.0665 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.8445 L22: 0.7282 REMARK 3 L33: 1.5222 L12: 0.1823 REMARK 3 L13: -0.1603 L23: 0.0979 REMARK 3 S TENSOR REMARK 3 S11: -0.1570 S12: -0.0078 S13: 0.0125 REMARK 3 S21: -0.0388 S22: -0.0059 S23: 0.0126 REMARK 3 S31: 0.0022 S32: 0.0115 S33: 0.1629 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 171 REMARK 3 ORIGIN FOR THE GROUP (A): -35.6756 -15.3157 -60.4429 REMARK 3 T TENSOR REMARK 3 T11: 0.1672 T22: 0.0424 REMARK 3 T33: 0.1217 T12: -0.0680 REMARK 3 T13: -0.0919 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.5615 L22: 2.7860 REMARK 3 L33: 0.5766 L12: 0.5669 REMARK 3 L13: -0.3342 L23: -0.2015 REMARK 3 S TENSOR REMARK 3 S11: 0.1012 S12: -0.0062 S13: 0.0437 REMARK 3 S21: 0.0505 S22: 0.0985 S23: 0.2207 REMARK 3 S31: 0.0226 S32: 0.0240 S33: -0.1997 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 171 REMARK 3 ORIGIN FOR THE GROUP (A): -26.2682 -38.3619 -8.3972 REMARK 3 T TENSOR REMARK 3 T11: 0.1654 T22: 0.0289 REMARK 3 T33: 0.0801 T12: 0.0303 REMARK 3 T13: -0.0234 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.6023 L22: 0.9474 REMARK 3 L33: 1.0466 L12: 0.0402 REMARK 3 L13: 0.1570 L23: -0.2113 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: 0.0481 S13: -0.1062 REMARK 3 S21: 0.0525 S22: -0.0250 S23: 0.1218 REMARK 3 S31: -0.1059 S32: 0.0787 S33: -0.0577 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 171 REMARK 3 RESIDUE RANGE : D 201 D 202 REMARK 3 ORIGIN FOR THE GROUP (A): -36.1942 -12.7811 -18.4917 REMARK 3 T TENSOR REMARK 3 T11: 0.2030 T22: 0.0419 REMARK 3 T33: 0.0224 T12: 0.0573 REMARK 3 T13: -0.0176 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 1.3328 L22: 1.7745 REMARK 3 L33: 0.9702 L12: -0.0535 REMARK 3 L13: 0.2506 L23: -0.0213 REMARK 3 S TENSOR REMARK 3 S11: -0.1451 S12: 0.1276 S13: -0.1353 REMARK 3 S21: 0.2125 S22: 0.1365 S23: -0.0910 REMARK 3 S31: -0.0976 S32: 0.0053 S33: 0.0085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, AUTOMAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33252 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 86.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45500 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3C2X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3350, PH 7.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.80500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.69500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.80500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.69500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.50000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.80500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.69500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.50000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.80500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.69500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 4 C - N - CD ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG B 12 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 62 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG D 16 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 4 -143.01 31.68 REMARK 500 ALA A 39 23.94 41.78 REMARK 500 HIS A 93 -16.73 -146.22 REMARK 500 ARG B 23 -10.53 -145.20 REMARK 500 HIS B 93 -19.60 -142.00 REMARK 500 ASN B 140 53.14 -106.45 REMARK 500 ALA C 5 -155.00 57.64 REMARK 500 HIS C 93 -24.66 -141.48 REMARK 500 ASN C 140 56.73 -101.07 REMARK 500 ARG C 147 -9.82 -57.94 REMARK 500 ALA D 5 43.38 -89.32 REMARK 500 ALA D 39 -4.68 81.70 REMARK 500 CYS D 43 125.68 -171.49 REMARK 500 HIS D 93 -13.55 -145.82 REMARK 500 ALA D 94 27.03 -148.77 REMARK 500 ASN D 140 52.14 -109.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY C 7 SER C 8 147.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAO D 202 DBREF 3UIL A 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 DBREF 3UIL B 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 DBREF 3UIL C 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 DBREF 3UIL D 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 SEQRES 1 A 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 A 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 A 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 A 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 A 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 A 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 A 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 A 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 A 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 A 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 A 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 A 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 A 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 A 171 ARG ALA SEQRES 1 B 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 B 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 B 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 B 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 B 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 B 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 B 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 B 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 B 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 B 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 B 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 B 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 B 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 B 171 ARG ALA SEQRES 1 C 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 C 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 C 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 C 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 C 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 C 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 C 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 C 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 C 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 C 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 C 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 C 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 C 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 C 171 ARG ALA SEQRES 1 D 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 D 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 D 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 D 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 D 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 D 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 D 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 D 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 D 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 D 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 D 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 D 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 D 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 D 171 ARG ALA HET GOL D 201 6 HET DAO D 202 14 HETNAM GOL GLYCEROL HETNAM DAO LAURIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 DAO C12 H24 O2 FORMUL 7 HOH *619(H2 O) HELIX 1 1 THR A 45 ASN A 63 1 19 HELIX 2 2 ALA A 94 ASN A 99 1 6 HELIX 3 3 PRO A 117 LEU A 134 1 18 HELIX 4 4 HIS A 146 GLN A 150 1 5 HELIX 5 5 GLY A 156 GLN A 164 1 9 HELIX 6 6 ALA B 5 GLY B 7 5 3 HELIX 7 7 PRO B 11 ARG B 16 5 6 HELIX 8 8 THR B 45 ASN B 63 1 19 HELIX 9 9 ALA B 94 ASN B 99 1 6 HELIX 10 10 PRO B 117 GLY B 135 1 19 HELIX 11 11 ARG B 147 VAL B 149 5 3 HELIX 12 12 GLY B 156 TRP B 166 1 11 HELIX 13 13 PRO C 11 TRP C 15 5 5 HELIX 14 14 THR C 45 ASN C 63 1 19 HELIX 15 15 ALA C 94 ASN C 99 1 6 HELIX 16 16 PRO C 117 LEU C 134 1 18 HELIX 17 17 ARG C 147 VAL C 149 5 3 HELIX 18 18 GLY C 156 GLN C 164 1 9 HELIX 19 19 ARG D 12 ARG D 16 5 5 HELIX 20 20 THR D 45 ARG D 62 1 18 HELIX 21 21 ALA D 94 ASN D 99 1 6 HELIX 22 22 PRO D 117 LEU D 134 1 18 HELIX 23 23 HIS D 146 GLN D 150 1 5 HELIX 24 24 GLY D 156 GLN D 164 1 9 SHEET 1 A 5 VAL A 81 GLU A 83 0 SHEET 2 A 5 PHE A 73 ILE A 75 -1 N LEU A 74 O TYR A 82 SHEET 3 A 5 SER A 102 PHE A 107 1 O SER A 106 N PHE A 73 SHEET 4 A 5 VAL A 30 HIS A 37 1 N TYR A 32 O ILE A 103 SHEET 5 A 5 LEU A 137 GLY A 145 1 O LYS A 144 N VAL A 33 SHEET 1 B 6 ILE B 9 VAL B 10 0 SHEET 2 B 6 VAL B 81 GLU B 83 1 O VAL B 81 N VAL B 10 SHEET 3 B 6 PHE B 73 ILE B 75 -1 N LEU B 74 O TYR B 82 SHEET 4 B 6 SER B 102 PHE B 107 1 O SER B 106 N ILE B 75 SHEET 5 B 6 VAL B 30 HIS B 37 1 N VAL B 34 O ILE B 105 SHEET 6 B 6 LEU B 137 GLY B 145 1 O LYS B 144 N VAL B 33 SHEET 1 C 5 VAL C 81 GLU C 83 0 SHEET 2 C 5 PHE C 73 ILE C 75 -1 N LEU C 74 O TYR C 82 SHEET 3 C 5 SER C 102 PHE C 107 1 O SER C 106 N ILE C 75 SHEET 4 C 5 VAL C 30 HIS C 37 1 N TYR C 32 O ILE C 103 SHEET 5 C 5 LEU C 137 GLY C 145 1 O LYS C 144 N VAL C 35 SHEET 1 D 5 VAL D 81 GLU D 83 0 SHEET 2 D 5 PHE D 73 ILE D 75 -1 N LEU D 74 O TYR D 82 SHEET 3 D 5 SER D 102 PHE D 107 1 O SER D 106 N ILE D 75 SHEET 4 D 5 VAL D 30 HIS D 37 1 N SER D 36 O ILE D 105 SHEET 5 D 5 LEU D 137 GLY D 145 1 O LYS D 144 N VAL D 33 SSBOND 1 CYS A 6 CYS A 130 1555 1555 2.03 SSBOND 2 CYS A 22 CYS A 67 1555 1555 2.04 SSBOND 3 CYS A 43 CYS A 49 1555 1555 2.10 SSBOND 4 CYS B 6 CYS B 130 1555 1555 2.08 SSBOND 5 CYS B 22 CYS B 67 1555 1555 2.08 SSBOND 6 CYS B 43 CYS B 49 1555 1555 2.19 SSBOND 7 CYS C 6 CYS C 130 1555 1555 2.01 SSBOND 8 CYS C 22 CYS C 67 1555 1555 2.07 SSBOND 9 CYS C 43 CYS C 49 1555 1555 2.14 SSBOND 10 CYS D 6 CYS D 130 1555 1555 2.02 SSBOND 11 CYS D 22 CYS D 67 1555 1555 2.10 SSBOND 12 CYS D 43 CYS D 49 1555 1555 2.12 CISPEP 1 ARG A 28 PRO A 29 0 -4.52 CISPEP 2 SER A 154 PRO A 155 0 11.66 CISPEP 3 ARG B 28 PRO B 29 0 -2.37 CISPEP 4 SER B 154 PRO B 155 0 12.27 CISPEP 5 ALA C 5 CYS C 6 0 4.10 CISPEP 6 ARG C 28 PRO C 29 0 -7.84 CISPEP 7 SER C 154 PRO C 155 0 16.07 CISPEP 8 ARG D 28 PRO D 29 0 0.81 CISPEP 9 SER D 154 PRO D 155 0 10.52 SITE 1 AC1 8 PRO C 151 HIS D 37 THR D 38 ALA D 39 SITE 2 AC1 8 TYR D 71 HIS D 146 HOH D 364 HOH D 388 SITE 1 AC2 5 ALA B 133 LEU B 134 HOH B 316 ARG D 31 SITE 2 AC2 5 ARG D 138 CRYST1 89.000 101.610 163.390 90.00 90.00 90.00 I 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011236 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009842 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006120 0.00000