HEADER TRANSPORT PROTEIN 09-NOV-11 3UKJ TITLE CRYSTAL STRUCTURE OF EXTRACELLULAR LIGAND-BINDING RECEPTOR FROM TITLE 2 RHODOPSEUDOMONAS PALUSTRIS HAA2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR LIGAND-BINDING RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 316058; SOURCE 4 STRAIN: HAA2; SOURCE 5 GENE: RPB_3575; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PSI-BIOLOGY, MCSG, MIDWEST CENTER FOR STRUCTURAL GENOMICS, KEYWDS 2 TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,J.MACK,S.ZERBS,F.COLLART,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 25-SEP-13 3UKJ 1 JRNL REVDAT 2 15-MAY-13 3UKJ 1 JRNL REVDAT 1 23-NOV-11 3UKJ 0 SPRSDE 23-NOV-11 3UKJ 3T23 JRNL AUTH K.TAN,C.CHANG,M.CUFF,J.OSIPIUK,E.LANDORF,J.C.MACK,S.ZERBS, JRNL AUTH 2 A.JOACHIMIAK,F.R.COLLART JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF SOLUTE BINDING JRNL TITL 2 PROTEINS FOR AROMATIC COMPOUNDS DERIVED FROM LIGNIN: JRNL TITL 3 P-COUMARIC ACID AND RELATED AROMATIC ACIDS. JRNL REF PROTEINS V. 81 1709 2013 JRNL REFN ISSN 0887-3585 JRNL PMID 23606130 JRNL DOI 10.1002/PROT.24305 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 42032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2127 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2657 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2689 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 404 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.97000 REMARK 3 B22 (A**2) : 2.20000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.724 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2841 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3860 ; 1.430 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 5.345 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;35.204 ;24.312 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 487 ;11.770 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.717 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2141 ; 0.021 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1827 ; 1.249 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2955 ; 1.947 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1014 ; 3.252 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 905 ; 4.690 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2841 ; 1.536 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5378 63.7740 2.6080 REMARK 3 T TENSOR REMARK 3 T11: 0.0345 T22: 0.0056 REMARK 3 T33: 0.0365 T12: 0.0004 REMARK 3 T13: -0.0001 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0339 L22: 0.0478 REMARK 3 L33: 0.0156 L12: 0.0013 REMARK 3 L13: -0.0036 L23: -0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.0003 S13: -0.0025 REMARK 3 S21: 0.0001 S22: -0.0001 S23: -0.0042 REMARK 3 S31: 0.0034 S32: 0.0019 S33: -0.0012 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 267 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6501 65.8401 28.9702 REMARK 3 T TENSOR REMARK 3 T11: 0.0348 T22: 0.0055 REMARK 3 T33: 0.0352 T12: -0.0005 REMARK 3 T13: 0.0004 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0484 L22: 0.0506 REMARK 3 L33: 0.0567 L12: -0.0128 REMARK 3 L13: 0.0226 L23: -0.0203 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0022 S13: -0.0045 REMARK 3 S21: 0.0041 S22: 0.0019 S23: -0.0003 REMARK 3 S31: 0.0025 S32: -0.0034 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 268 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6416 70.0705 5.5677 REMARK 3 T TENSOR REMARK 3 T11: 0.0318 T22: 0.0062 REMARK 3 T33: 0.0350 T12: -0.0001 REMARK 3 T13: 0.0005 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.1695 L22: 0.3064 REMARK 3 L33: 0.0582 L12: -0.0376 REMARK 3 L13: 0.0342 L23: -0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0023 S13: 0.0021 REMARK 3 S21: -0.0087 S22: -0.0043 S23: 0.0080 REMARK 3 S31: -0.0020 S32: -0.0045 S33: 0.0007 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 303 A 384 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8431 75.3841 3.7303 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0043 REMARK 3 T33: 0.0365 T12: 0.0004 REMARK 3 T13: -0.0010 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0928 L22: 0.0227 REMARK 3 L33: 0.0861 L12: 0.0137 REMARK 3 L13: -0.0745 L23: -0.0182 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0024 S13: 0.0053 REMARK 3 S21: -0.0008 S22: 0.0007 S23: -0.0011 REMARK 3 S31: -0.0040 S32: -0.0041 S33: -0.0042 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3UKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-11. REMARK 100 THE RCSB ID CODE IS RCSB068869. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42082 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.58900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, DM, SHELXDE, RESOLVE, ARP/WARP, REMARK 200 COOT, REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM NICKEL CHLORIDE, 0.1M TRIS, 20% REMARK 280 PEG2000 MME, 10 MM PRASEODYMIUM ACETATE, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.34250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.34400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.15700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.34400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.34250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.15700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 24 REMARK 465 ASN A 25 REMARK 465 ALA A 26 REMARK 465 GLU A 27 REMARK 465 THR A 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 29 O HOH A 577 1.96 REMARK 500 O1 GOL A 403 O HOH A 756 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 89 -67.30 -99.20 REMARK 500 SER A 99 -159.06 -95.46 REMARK 500 GLN A 116 55.37 71.15 REMARK 500 ASP A 273 67.76 -152.28 REMARK 500 ASN A 301 18.98 59.25 REMARK 500 ASP A 367 -159.37 -135.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 749 DISTANCE = 5.23 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PR A 402 PR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 334 OE1 REMARK 620 2 THR A 327 O 74.8 REMARK 620 3 GLU A 334 OE2 52.8 79.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ENO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PR A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC102211 RELATED DB: TARGETDB DBREF 3UKJ A 26 385 UNP Q2IU40 Q2IU40_RHOP2 26 385 SEQADV 3UKJ SER A 24 UNP Q2IU40 EXPRESSION TAG SEQADV 3UKJ ASN A 25 UNP Q2IU40 EXPRESSION TAG SEQRES 1 A 362 SER ASN ALA GLU THR ASN GLU ILE THR VAL GLY ILE THR SEQRES 2 A 362 VAL THR THR THR GLY PRO ALA ALA ALA LEU GLY ILE PRO SEQRES 3 A 362 GLU ARG ASN ALA LEU GLU PHE VAL ALA LYS GLU ILE GLY SEQRES 4 A 362 GLY HIS PRO ILE LYS MSE ILE VAL LEU ASP ASP GLY GLY SEQRES 5 A 362 ASP PRO THR ALA ALA THR THR ASN ALA ARG ARG PHE VAL SEQRES 6 A 362 THR GLU SER LYS ALA ASP VAL ILE MSE GLY SER SER VAL SEQRES 7 A 362 THR PRO PRO THR VAL ALA VAL SER ASN VAL ALA ASN GLU SEQRES 8 A 362 ALA GLN VAL PRO HIS ILE ALA LEU ALA PRO LEU PRO VAL SEQRES 9 A 362 THR PRO GLU ARG ALA LYS TRP SER VAL VAL MSE PRO GLN SEQRES 10 A 362 PRO ILE PRO ILE MSE GLY LYS VAL LEU TYR GLU HIS MSE SEQRES 11 A 362 LYS LYS ASN ASN ILE LYS THR VAL GLY TYR ILE GLY TYR SEQRES 12 A 362 SER ASP SER TYR GLY ASP LEU TRP PHE ASN ASP LEU LYS SEQRES 13 A 362 LYS GLN GLY GLU ALA MSE GLY LEU LYS ILE VAL ALA GLU SEQRES 14 A 362 GLU ARG PHE ALA ARG PRO ASP THR SER VAL ALA GLY GLN SEQRES 15 A 362 VAL LEU LYS LEU VAL ALA ALA ASN PRO ASP ALA ILE LEU SEQRES 16 A 362 VAL GLY ALA SER GLY THR ALA ALA ALA LEU PRO GLN THR SEQRES 17 A 362 ALA LEU ARG GLU ARG GLY TYR ASN GLY LEU ILE TYR GLN SEQRES 18 A 362 THR HIS GLY ALA ALA SER MSE ASP PHE ILE ARG ILE ALA SEQRES 19 A 362 GLY LYS SER ALA GLU GLY VAL LEU MSE ALA SER GLY PRO SEQRES 20 A 362 VAL MSE ASP PRO GLU GLY GLN ASN ASP SER ALA LEU THR SEQRES 21 A 362 LYS LYS PRO GLY LEU GLU LEU ASN THR ALA TYR GLU THR SEQRES 22 A 362 LYS TYR GLY PRO ASN SER ARG SER GLN PHE ALA GLY HIS SEQRES 23 A 362 SER PHE ASP ALA PHE LYS VAL LEU GLU ARG VAL ILE PRO SEQRES 24 A 362 VAL ALA LEU LYS THR ALA LYS PRO GLY THR GLN GLU PHE SEQRES 25 A 362 ARG GLU ALA ILE ARG LYS ALA LEU LEU THR GLU LYS ASP SEQRES 26 A 362 ILE ALA ALA SER GLN GLY VAL TYR SER PHE THR GLU THR SEQRES 27 A 362 ASP ARG TYR GLY LEU ASP ASP ARG SER ARG ILE LEU LEU SEQRES 28 A 362 THR VAL LYS ASN GLY LYS TYR VAL ILE VAL LYS MODRES 3UKJ MSE A 68 MET SELENOMETHIONINE MODRES 3UKJ MSE A 97 MET SELENOMETHIONINE MODRES 3UKJ MSE A 138 MET SELENOMETHIONINE MODRES 3UKJ MSE A 145 MET SELENOMETHIONINE MODRES 3UKJ MSE A 153 MET SELENOMETHIONINE MODRES 3UKJ MSE A 185 MET SELENOMETHIONINE MODRES 3UKJ MSE A 251 MET SELENOMETHIONINE MODRES 3UKJ MSE A 266 MET SELENOMETHIONINE MODRES 3UKJ MSE A 272 MET SELENOMETHIONINE HET MSE A 68 8 HET MSE A 97 8 HET MSE A 138 8 HET MSE A 145 8 HET MSE A 153 8 HET MSE A 185 8 HET MSE A 251 8 HET MSE A 266 8 HET MSE A 272 8 HET ENO A 401 13 HET PR A 402 1 HET GOL A 403 6 HETNAM MSE SELENOMETHIONINE HETNAM ENO 3-(4-HYDROXY-PHENYL)PYRUVIC ACID HETNAM PR PRASEODYMIUM ION HETNAM GOL GLYCEROL HETSYN ENO HPP HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 ENO C9 H8 O4 FORMUL 3 PR PR 3+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *404(H2 O) HELIX 1 1 ALA A 43 LEU A 54 1 12 HELIX 2 2 GLU A 55 VAL A 57 5 3 HELIX 3 3 ASP A 76 THR A 89 1 14 HELIX 4 4 VAL A 101 GLN A 116 1 16 HELIX 5 5 THR A 128 LYS A 133 1 6 HELIX 6 6 PRO A 141 ASN A 156 1 16 HELIX 7 7 ASP A 168 MSE A 185 1 18 HELIX 8 8 VAL A 202 ASN A 213 1 12 HELIX 9 9 SER A 222 ARG A 236 1 15 HELIX 10 10 HIS A 246 ALA A 249 5 4 HELIX 11 11 SER A 250 GLY A 258 1 9 HELIX 12 12 LYS A 259 GLU A 262 5 4 HELIX 13 13 GLY A 269 ASP A 273 5 5 HELIX 14 14 THR A 283 GLY A 299 1 17 HELIX 15 15 SER A 304 ALA A 328 1 25 HELIX 16 16 THR A 332 GLU A 346 1 15 HELIX 17 17 ASP A 367 ARG A 371 5 5 SHEET 1 A 6 GLU A 60 ILE A 61 0 SHEET 2 A 6 HIS A 64 ASP A 72 -1 O HIS A 64 N ILE A 61 SHEET 3 A 6 ILE A 31 VAL A 37 1 N ILE A 35 O ILE A 69 SHEET 4 A 6 VAL A 95 GLY A 98 1 O MSE A 97 N THR A 36 SHEET 5 A 6 HIS A 119 ALA A 121 1 O ILE A 120 N ILE A 96 SHEET 6 A 6 SER A 135 VAL A 137 1 O VAL A 136 N ALA A 121 SHEET 1 B 7 LYS A 188 PHE A 195 0 SHEET 2 B 7 THR A 160 TYR A 166 1 N VAL A 161 O LYS A 188 SHEET 3 B 7 ALA A 216 GLY A 220 1 O GLY A 220 N ILE A 164 SHEET 4 B 7 LEU A 241 GLN A 244 1 O TYR A 243 N ILE A 217 SHEET 5 B 7 LEU A 265 SER A 268 1 O LEU A 265 N GLN A 244 SHEET 6 B 7 ILE A 372 LYS A 377 -1 O LEU A 374 N MSE A 266 SHEET 7 B 7 LYS A 380 ILE A 383 -1 O VAL A 382 N THR A 375 SHEET 1 C 2 ILE A 349 ALA A 350 0 SHEET 2 C 2 VAL A 355 TYR A 356 -1 O TYR A 356 N ILE A 349 LINK C ALYS A 67 N MSE A 68 1555 1555 1.33 LINK C BLYS A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N ILE A 69 1555 1555 1.33 LINK C ILE A 96 N MSE A 97 1555 1555 1.32 LINK C MSE A 97 N GLY A 98 1555 1555 1.35 LINK C VAL A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N PRO A 139 1555 1555 1.34 LINK C ILE A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N GLY A 146 1555 1555 1.33 LINK C HIS A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N LYS A 154 1555 1555 1.33 LINK C ALA A 184 N MSE A 185 1555 1555 1.34 LINK C MSE A 185 N GLY A 186 1555 1555 1.34 LINK C SER A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N ASP A 252 1555 1555 1.34 LINK C LEU A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N ALA A 267 1555 1555 1.33 LINK C VAL A 271 N MSE A 272 1555 1555 1.33 LINK C MSE A 272 N ASP A 273 1555 1555 1.33 LINK PR PR A 402 O HOH A 518 1555 1555 2.27 LINK OE1 GLU A 334 PR PR A 402 1555 1555 2.32 LINK PR PR A 402 O HOH A 591 1555 1555 2.41 LINK O THR A 327 PR PR A 402 1555 1555 2.54 LINK PR PR A 402 O HOH A 507 1555 1555 2.55 LINK PR PR A 402 O HOH A 661 1555 1555 2.56 LINK PR PR A 402 O HOH A 662 1555 1555 2.64 LINK OE2 GLU A 334 PR PR A 402 1555 1555 2.64 CISPEP 1 GLY A 98 SER A 99 0 -12.83 SITE 1 AC1 14 LEU A 46 VAL A 101 THR A 102 ALA A 123 SITE 2 AC1 14 PRO A 124 PRO A 139 TYR A 166 TYR A 170 SITE 3 AC1 14 ARG A 197 SER A 222 HIS A 246 GLY A 247 SITE 4 AC1 14 GLN A 305 HIS A 309 SITE 1 AC2 8 THR A 327 GLU A 334 HOH A 507 HOH A 518 SITE 2 AC2 8 HOH A 543 HOH A 591 HOH A 661 HOH A 662 SITE 1 AC3 6 PRO A 103 ASP A 168 SER A 169 HOH A 394 SITE 2 AC3 6 HOH A 396 HOH A 756 CRYST1 42.685 70.314 104.688 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023427 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009552 0.00000