data_3UL8 # _entry.id 3UL8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UL8 pdb_00003ul8 10.2210/pdb3ul8/pdb RCSB RCSB068894 ? ? WWPDB D_1000068894 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-04 2 'Structure model' 1 1 2017-08-23 3 'Structure model' 2 0 2018-01-31 4 'Structure model' 3 0 2020-07-29 5 'Structure model' 3 1 2023-11-01 6 'Structure model' 3 2 2024-11-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 2 'Structure model' 'Source and taxonomy' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Atomic model' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Non-polymer description' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' Advisory 9 4 'Structure model' 'Atomic model' 10 4 'Structure model' 'Data collection' 11 4 'Structure model' 'Database references' 12 4 'Structure model' 'Derived calculations' 13 4 'Structure model' 'Structure summary' 14 5 'Structure model' 'Data collection' 15 5 'Structure model' 'Database references' 16 5 'Structure model' 'Refinement description' 17 5 'Structure model' 'Structure summary' 18 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 2 'Structure model' software 3 3 'Structure model' atom_site 4 3 'Structure model' entity 5 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 3 'Structure model' struct_site_gen 7 4 'Structure model' atom_site 8 4 'Structure model' chem_comp 9 4 'Structure model' entity 10 4 'Structure model' pdbx_branch_scheme 11 4 'Structure model' pdbx_chem_comp_identifier 12 4 'Structure model' pdbx_entity_branch 13 4 'Structure model' pdbx_entity_branch_descriptor 14 4 'Structure model' pdbx_entity_branch_link 15 4 'Structure model' pdbx_entity_branch_list 16 4 'Structure model' pdbx_entity_nonpoly 17 4 'Structure model' pdbx_nonpoly_scheme 18 4 'Structure model' pdbx_struct_assembly_gen 19 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 20 4 'Structure model' struct_asym 21 4 'Structure model' struct_conn 22 4 'Structure model' struct_ref_seq_dif 23 4 'Structure model' struct_site 24 4 'Structure model' struct_site_gen 25 5 'Structure model' chem_comp 26 5 'Structure model' chem_comp_atom 27 5 'Structure model' chem_comp_bond 28 5 'Structure model' database_2 29 5 'Structure model' pdbx_initial_refinement_model 30 6 'Structure model' pdbx_entry_details 31 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_atom_id' 6 3 'Structure model' '_atom_site.auth_comp_id' 7 3 'Structure model' '_atom_site.label_atom_id' 8 3 'Structure model' '_atom_site.label_comp_id' 9 3 'Structure model' '_atom_site.type_symbol' 10 3 'Structure model' '_chem_comp.formula' 11 3 'Structure model' '_chem_comp.id' 12 3 'Structure model' '_chem_comp.name' 13 3 'Structure model' '_chem_comp.pdbx_synonyms' 14 3 'Structure model' '_entity.formula_weight' 15 3 'Structure model' '_entity.pdbx_description' 16 3 'Structure model' '_struct_site_gen.auth_comp_id' 17 3 'Structure model' '_struct_site_gen.label_comp_id' 18 4 'Structure model' '_atom_site.B_iso_or_equiv' 19 4 'Structure model' '_atom_site.Cartn_x' 20 4 'Structure model' '_atom_site.Cartn_y' 21 4 'Structure model' '_atom_site.Cartn_z' 22 4 'Structure model' '_atom_site.auth_asym_id' 23 4 'Structure model' '_atom_site.auth_atom_id' 24 4 'Structure model' '_atom_site.auth_comp_id' 25 4 'Structure model' '_atom_site.auth_seq_id' 26 4 'Structure model' '_atom_site.label_asym_id' 27 4 'Structure model' '_atom_site.label_atom_id' 28 4 'Structure model' '_atom_site.label_comp_id' 29 4 'Structure model' '_atom_site.label_entity_id' 30 4 'Structure model' '_atom_site.type_symbol' 31 4 'Structure model' '_chem_comp.name' 32 4 'Structure model' '_chem_comp.type' 33 4 'Structure model' '_entity.formula_weight' 34 4 'Structure model' '_entity.pdbx_description' 35 4 'Structure model' '_entity.pdbx_number_of_molecules' 36 4 'Structure model' '_entity.type' 37 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 38 4 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_asym_id' 39 4 'Structure model' '_struct_conn.pdbx_dist_value' 40 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 41 4 'Structure model' '_struct_conn.pdbx_role' 42 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 43 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 44 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 45 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 46 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 47 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 48 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 49 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 50 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 51 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 52 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 53 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 54 4 'Structure model' '_struct_ref_seq_dif.details' 55 5 'Structure model' '_chem_comp.pdbx_synonyms' 56 5 'Structure model' '_database_2.pdbx_DOI' 57 5 'Structure model' '_database_2.pdbx_database_accession' 58 6 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UL8 _pdbx_database_status.recvd_initial_deposition_date 2011-11-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3UL7 . unspecified PDB 3UL9 . unspecified PDB 3ULA . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, H.J.' 1 'Cheong, H.K.' 2 'Jeon, Y.H.' 3 # _citation.id primary _citation.title 'Structure-Based Rational Design of a Toll-like Receptor 4 (TLR4) Decoy Receptor with High Binding Affinity for a Target Protein.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first e30929 _citation.page_last e30929 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22363519 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0030929 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Han, J.' 1 ? primary 'Kim, H.J.' 2 ? primary 'Lee, S.C.' 3 ? primary 'Hong, S.' 4 ? primary 'Park, K.' 5 ? primary 'Jeon, Y.H.' 6 ? primary 'Kim, D.' 7 ? primary 'Cheong, H.K.' 8 ? primary 'Kim, H.S.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Toll-like receptor 4, Variable lymphocyte receptor B' 31400.982 1 ? V134L 'UNP RESIDUES 27-228, UNP RESIDUES 126-199' 'THE FUSION PROTEIN OF TLR4 (UNP RESIDUES 27-228) AND VLRB (UNP RESIDUES 126-199)' 2 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 non-polymer man beta-L-fucopyranose 164.156 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 water nat water 18.015 32 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name hToll # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL STLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC SCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICPT ; _entity_poly.pdbx_seq_one_letter_code_can ;GSEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL STLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC SCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICPT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 beta-L-fucopyranose FUL 5 'SULFATE ION' SO4 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLU n 1 4 PRO n 1 5 CYS n 1 6 VAL n 1 7 GLU n 1 8 VAL n 1 9 VAL n 1 10 PRO n 1 11 ASN n 1 12 ILE n 1 13 THR n 1 14 TYR n 1 15 GLN n 1 16 CYS n 1 17 MET n 1 18 GLU n 1 19 LEU n 1 20 ASN n 1 21 PHE n 1 22 TYR n 1 23 LYS n 1 24 ILE n 1 25 PRO n 1 26 ASP n 1 27 ASN n 1 28 LEU n 1 29 PRO n 1 30 PHE n 1 31 SER n 1 32 THR n 1 33 LYS n 1 34 ASN n 1 35 LEU n 1 36 ASP n 1 37 LEU n 1 38 SER n 1 39 PHE n 1 40 ASN n 1 41 PRO n 1 42 LEU n 1 43 ARG n 1 44 HIS n 1 45 LEU n 1 46 GLY n 1 47 SER n 1 48 TYR n 1 49 SER n 1 50 PHE n 1 51 PHE n 1 52 SER n 1 53 PHE n 1 54 PRO n 1 55 GLU n 1 56 LEU n 1 57 GLN n 1 58 VAL n 1 59 LEU n 1 60 ASP n 1 61 LEU n 1 62 SER n 1 63 ARG n 1 64 CYS n 1 65 GLU n 1 66 ILE n 1 67 GLN n 1 68 THR n 1 69 ILE n 1 70 GLU n 1 71 ASP n 1 72 GLY n 1 73 ALA n 1 74 TYR n 1 75 GLN n 1 76 SER n 1 77 LEU n 1 78 SER n 1 79 HIS n 1 80 LEU n 1 81 SER n 1 82 THR n 1 83 LEU n 1 84 ILE n 1 85 LEU n 1 86 THR n 1 87 GLY n 1 88 ASN n 1 89 PRO n 1 90 ILE n 1 91 GLN n 1 92 SER n 1 93 LEU n 1 94 ALA n 1 95 LEU n 1 96 GLY n 1 97 ALA n 1 98 PHE n 1 99 SER n 1 100 GLY n 1 101 LEU n 1 102 SER n 1 103 SER n 1 104 LEU n 1 105 GLN n 1 106 LYS n 1 107 LEU n 1 108 VAL n 1 109 ALA n 1 110 LEU n 1 111 GLU n 1 112 THR n 1 113 ASN n 1 114 LEU n 1 115 ALA n 1 116 SER n 1 117 LEU n 1 118 GLU n 1 119 ASN n 1 120 PHE n 1 121 PRO n 1 122 ILE n 1 123 GLY n 1 124 HIS n 1 125 LEU n 1 126 LYS n 1 127 THR n 1 128 LEU n 1 129 LYS n 1 130 GLU n 1 131 LEU n 1 132 ASN n 1 133 VAL n 1 134 ALA n 1 135 HIS n 1 136 ASN n 1 137 LEU n 1 138 ILE n 1 139 GLN n 1 140 SER n 1 141 PHE n 1 142 LYS n 1 143 LEU n 1 144 PRO n 1 145 GLU n 1 146 TYR n 1 147 PHE n 1 148 SER n 1 149 ASN n 1 150 LEU n 1 151 THR n 1 152 ASN n 1 153 LEU n 1 154 GLU n 1 155 HIS n 1 156 LEU n 1 157 ASP n 1 158 LEU n 1 159 SER n 1 160 SER n 1 161 ASN n 1 162 LYS n 1 163 ILE n 1 164 GLN n 1 165 SER n 1 166 ILE n 1 167 TYR n 1 168 CYS n 1 169 THR n 1 170 ASP n 1 171 LEU n 1 172 ARG n 1 173 VAL n 1 174 LEU n 1 175 HIS n 1 176 GLN n 1 177 MET n 1 178 PRO n 1 179 LEU n 1 180 LEU n 1 181 ASN n 1 182 LEU n 1 183 SER n 1 184 LEU n 1 185 ASP n 1 186 LEU n 1 187 SER n 1 188 LEU n 1 189 ASN n 1 190 PRO n 1 191 MET n 1 192 ASN n 1 193 PHE n 1 194 ILE n 1 195 GLN n 1 196 PRO n 1 197 GLY n 1 198 ALA n 1 199 PHE n 1 200 LYS n 1 201 GLU n 1 202 ILE n 1 203 ARG n 1 204 LEU n 1 205 LYS n 1 206 GLU n 1 207 LEU n 1 208 ALA n 1 209 LEU n 1 210 ASP n 1 211 THR n 1 212 ASN n 1 213 GLN n 1 214 LEU n 1 215 LYS n 1 216 SER n 1 217 VAL n 1 218 PRO n 1 219 ASP n 1 220 GLY n 1 221 ILE n 1 222 PHE n 1 223 ASP n 1 224 ARG n 1 225 LEU n 1 226 THR n 1 227 SER n 1 228 LEU n 1 229 GLN n 1 230 LYS n 1 231 ILE n 1 232 TRP n 1 233 LEU n 1 234 HIS n 1 235 THR n 1 236 ASN n 1 237 PRO n 1 238 TRP n 1 239 ASP n 1 240 CYS n 1 241 SER n 1 242 CYS n 1 243 PRO n 1 244 ARG n 1 245 ILE n 1 246 ASP n 1 247 TYR n 1 248 LEU n 1 249 SER n 1 250 ARG n 1 251 TRP n 1 252 LEU n 1 253 ASN n 1 254 LYS n 1 255 ASN n 1 256 SER n 1 257 GLN n 1 258 LYS n 1 259 GLU n 1 260 GLN n 1 261 GLY n 1 262 SER n 1 263 ALA n 1 264 LYS n 1 265 CYS n 1 266 SER n 1 267 GLY n 1 268 SER n 1 269 GLY n 1 270 LYS n 1 271 PRO n 1 272 VAL n 1 273 ARG n 1 274 SER n 1 275 ILE n 1 276 ILE n 1 277 CYS n 1 278 PRO n 1 279 THR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 3 204 'human, Inshore hagfish' ? 'TLR4, VLRB' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'Fall armyworm' 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? Baculovirus ? ? ? ? ? ? 1 2 sample ? 205 278 'human, Inshore hagfish' ? 'TLR4, VLRB' ? ? ? ? ? ? 'Eptatretus burgeri' 7764 ? ? ? ? ? ? ? 'Fall armyworm' 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? Baculovirus ? ? ? ? ? ? # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUL 'L-saccharide, beta linking' . beta-L-fucopyranose 'beta-L-fucose; 6-deoxy-beta-L-galactopyranose; L-fucose; fucose; 6-DEOXY-BETA-L-GALACTOSE' 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man FUL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpb FUL 'COMMON NAME' GMML 1.0 b-L-fucopyranose FUL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-L-Fucp FUL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 25 ? ? ? A . n A 1 2 SER 2 26 ? ? ? A . n A 1 3 GLU 3 27 27 GLU GLU A . n A 1 4 PRO 4 28 28 PRO PRO A . n A 1 5 CYS 5 29 29 CYS CYS A . n A 1 6 VAL 6 30 30 VAL VAL A . n A 1 7 GLU 7 31 31 GLU GLU A . n A 1 8 VAL 8 32 32 VAL VAL A . n A 1 9 VAL 9 33 33 VAL VAL A . n A 1 10 PRO 10 34 34 PRO PRO A . n A 1 11 ASN 11 35 35 ASN ASN A . n A 1 12 ILE 12 36 36 ILE ILE A . n A 1 13 THR 13 37 37 THR THR A . n A 1 14 TYR 14 38 38 TYR TYR A . n A 1 15 GLN 15 39 39 GLN GLN A . n A 1 16 CYS 16 40 40 CYS CYS A . n A 1 17 MET 17 41 41 MET MET A . n A 1 18 GLU 18 42 42 GLU GLU A . n A 1 19 LEU 19 43 43 LEU LEU A . n A 1 20 ASN 20 44 44 ASN ASN A . n A 1 21 PHE 21 45 45 PHE PHE A . n A 1 22 TYR 22 46 46 TYR TYR A . n A 1 23 LYS 23 47 47 LYS LYS A . n A 1 24 ILE 24 48 48 ILE ILE A . n A 1 25 PRO 25 49 49 PRO PRO A . n A 1 26 ASP 26 50 50 ASP ASP A . n A 1 27 ASN 27 51 51 ASN ASN A . n A 1 28 LEU 28 52 52 LEU LEU A . n A 1 29 PRO 29 53 53 PRO PRO A . n A 1 30 PHE 30 54 54 PHE PHE A . n A 1 31 SER 31 55 55 SER SER A . n A 1 32 THR 32 56 56 THR THR A . n A 1 33 LYS 33 57 57 LYS LYS A . n A 1 34 ASN 34 58 58 ASN ASN A . n A 1 35 LEU 35 59 59 LEU LEU A . n A 1 36 ASP 36 60 60 ASP ASP A . n A 1 37 LEU 37 61 61 LEU LEU A . n A 1 38 SER 38 62 62 SER SER A . n A 1 39 PHE 39 63 63 PHE PHE A . n A 1 40 ASN 40 64 64 ASN ASN A . n A 1 41 PRO 41 65 65 PRO PRO A . n A 1 42 LEU 42 66 66 LEU LEU A . n A 1 43 ARG 43 67 67 ARG ARG A . n A 1 44 HIS 44 68 68 HIS HIS A . n A 1 45 LEU 45 69 69 LEU LEU A . n A 1 46 GLY 46 70 70 GLY GLY A . n A 1 47 SER 47 71 71 SER SER A . n A 1 48 TYR 48 72 72 TYR TYR A . n A 1 49 SER 49 73 73 SER SER A . n A 1 50 PHE 50 74 74 PHE PHE A . n A 1 51 PHE 51 75 75 PHE PHE A . n A 1 52 SER 52 76 76 SER SER A . n A 1 53 PHE 53 77 77 PHE PHE A . n A 1 54 PRO 54 78 78 PRO PRO A . n A 1 55 GLU 55 79 79 GLU GLU A . n A 1 56 LEU 56 80 80 LEU LEU A . n A 1 57 GLN 57 81 81 GLN GLN A . n A 1 58 VAL 58 82 82 VAL VAL A . n A 1 59 LEU 59 83 83 LEU LEU A . n A 1 60 ASP 60 84 84 ASP ASP A . n A 1 61 LEU 61 85 85 LEU LEU A . n A 1 62 SER 62 86 86 SER SER A . n A 1 63 ARG 63 87 87 ARG ARG A . n A 1 64 CYS 64 88 88 CYS CYS A . n A 1 65 GLU 65 89 89 GLU GLU A . n A 1 66 ILE 66 90 90 ILE ILE A . n A 1 67 GLN 67 91 91 GLN GLN A . n A 1 68 THR 68 92 92 THR THR A . n A 1 69 ILE 69 93 93 ILE ILE A . n A 1 70 GLU 70 94 94 GLU GLU A . n A 1 71 ASP 71 95 95 ASP ASP A . n A 1 72 GLY 72 96 96 GLY GLY A . n A 1 73 ALA 73 97 97 ALA ALA A . n A 1 74 TYR 74 98 98 TYR TYR A . n A 1 75 GLN 75 99 99 GLN GLN A . n A 1 76 SER 76 100 100 SER SER A . n A 1 77 LEU 77 101 101 LEU LEU A . n A 1 78 SER 78 102 102 SER SER A . n A 1 79 HIS 79 103 103 HIS HIS A . n A 1 80 LEU 80 104 104 LEU LEU A . n A 1 81 SER 81 105 105 SER SER A . n A 1 82 THR 82 106 106 THR THR A . n A 1 83 LEU 83 107 107 LEU LEU A . n A 1 84 ILE 84 108 108 ILE ILE A . n A 1 85 LEU 85 109 109 LEU LEU A . n A 1 86 THR 86 110 110 THR THR A . n A 1 87 GLY 87 111 111 GLY GLY A . n A 1 88 ASN 88 112 112 ASN ASN A . n A 1 89 PRO 89 113 113 PRO PRO A . n A 1 90 ILE 90 114 114 ILE ILE A . n A 1 91 GLN 91 115 115 GLN GLN A . n A 1 92 SER 92 116 116 SER SER A . n A 1 93 LEU 93 117 117 LEU LEU A . n A 1 94 ALA 94 118 118 ALA ALA A . n A 1 95 LEU 95 119 119 LEU LEU A . n A 1 96 GLY 96 120 120 GLY GLY A . n A 1 97 ALA 97 121 121 ALA ALA A . n A 1 98 PHE 98 122 122 PHE PHE A . n A 1 99 SER 99 123 123 SER SER A . n A 1 100 GLY 100 124 124 GLY GLY A . n A 1 101 LEU 101 125 125 LEU LEU A . n A 1 102 SER 102 126 126 SER SER A . n A 1 103 SER 103 127 127 SER SER A . n A 1 104 LEU 104 128 128 LEU LEU A . n A 1 105 GLN 105 129 129 GLN GLN A . n A 1 106 LYS 106 130 130 LYS LYS A . n A 1 107 LEU 107 131 131 LEU LEU A . n A 1 108 VAL 108 132 132 VAL VAL A . n A 1 109 ALA 109 133 133 ALA ALA A . n A 1 110 LEU 110 134 134 LEU LEU A . n A 1 111 GLU 111 135 135 GLU GLU A . n A 1 112 THR 112 136 136 THR THR A . n A 1 113 ASN 113 137 137 ASN ASN A . n A 1 114 LEU 114 138 138 LEU LEU A . n A 1 115 ALA 115 139 139 ALA ALA A . n A 1 116 SER 116 140 140 SER SER A . n A 1 117 LEU 117 141 141 LEU LEU A . n A 1 118 GLU 118 142 142 GLU GLU A . n A 1 119 ASN 119 143 143 ASN ASN A . n A 1 120 PHE 120 144 144 PHE PHE A . n A 1 121 PRO 121 145 145 PRO PRO A . n A 1 122 ILE 122 146 146 ILE ILE A . n A 1 123 GLY 123 147 147 GLY GLY A . n A 1 124 HIS 124 148 148 HIS HIS A . n A 1 125 LEU 125 149 149 LEU LEU A . n A 1 126 LYS 126 150 150 LYS LYS A . n A 1 127 THR 127 151 151 THR THR A . n A 1 128 LEU 128 152 152 LEU LEU A . n A 1 129 LYS 129 153 153 LYS LYS A . n A 1 130 GLU 130 154 154 GLU GLU A . n A 1 131 LEU 131 155 155 LEU LEU A . n A 1 132 ASN 132 156 156 ASN ASN A . n A 1 133 VAL 133 157 157 VAL VAL A . n A 1 134 ALA 134 158 158 ALA ALA A . n A 1 135 HIS 135 159 159 HIS HIS A . n A 1 136 ASN 136 160 160 ASN ASN A . n A 1 137 LEU 137 161 161 LEU LEU A . n A 1 138 ILE 138 162 162 ILE ILE A . n A 1 139 GLN 139 163 163 GLN GLN A . n A 1 140 SER 140 164 164 SER SER A . n A 1 141 PHE 141 165 165 PHE PHE A . n A 1 142 LYS 142 166 166 LYS LYS A . n A 1 143 LEU 143 167 167 LEU LEU A . n A 1 144 PRO 144 168 168 PRO PRO A . n A 1 145 GLU 145 169 169 GLU GLU A . n A 1 146 TYR 146 170 170 TYR TYR A . n A 1 147 PHE 147 171 171 PHE PHE A . n A 1 148 SER 148 172 172 SER SER A . n A 1 149 ASN 149 173 173 ASN ASN A . n A 1 150 LEU 150 174 174 LEU LEU A . n A 1 151 THR 151 175 175 THR THR A . n A 1 152 ASN 152 176 176 ASN ASN A . n A 1 153 LEU 153 177 177 LEU LEU A . n A 1 154 GLU 154 178 178 GLU GLU A . n A 1 155 HIS 155 179 179 HIS HIS A . n A 1 156 LEU 156 180 180 LEU LEU A . n A 1 157 ASP 157 181 181 ASP ASP A . n A 1 158 LEU 158 182 182 LEU LEU A . n A 1 159 SER 159 183 183 SER SER A . n A 1 160 SER 160 184 184 SER SER A . n A 1 161 ASN 161 185 185 ASN ASN A . n A 1 162 LYS 162 186 186 LYS LYS A . n A 1 163 ILE 163 187 187 ILE ILE A . n A 1 164 GLN 164 188 188 GLN GLN A . n A 1 165 SER 165 189 189 SER SER A . n A 1 166 ILE 166 190 190 ILE ILE A . n A 1 167 TYR 167 191 191 TYR TYR A . n A 1 168 CYS 168 192 192 CYS CYS A . n A 1 169 THR 169 193 193 THR THR A . n A 1 170 ASP 170 194 194 ASP ASP A . n A 1 171 LEU 171 195 195 LEU LEU A . n A 1 172 ARG 172 196 196 ARG ARG A . n A 1 173 VAL 173 197 197 VAL VAL A . n A 1 174 LEU 174 198 198 LEU LEU A . n A 1 175 HIS 175 199 199 HIS HIS A . n A 1 176 GLN 176 200 200 GLN GLN A . n A 1 177 MET 177 201 201 MET MET A . n A 1 178 PRO 178 202 202 PRO PRO A . n A 1 179 LEU 179 203 203 LEU LEU A . n A 1 180 LEU 180 204 204 LEU LEU A . n A 1 181 ASN 181 205 205 ASN ASN A . n A 1 182 LEU 182 206 206 LEU LEU A . n A 1 183 SER 183 207 207 SER SER A . n A 1 184 LEU 184 208 208 LEU LEU A . n A 1 185 ASP 185 209 209 ASP ASP A . n A 1 186 LEU 186 210 210 LEU LEU A . n A 1 187 SER 187 211 211 SER SER A . n A 1 188 LEU 188 212 212 LEU LEU A . n A 1 189 ASN 189 213 213 ASN ASN A . n A 1 190 PRO 190 214 214 PRO PRO A . n A 1 191 MET 191 215 215 MET MET A . n A 1 192 ASN 192 216 216 ASN ASN A . n A 1 193 PHE 193 217 217 PHE PHE A . n A 1 194 ILE 194 218 218 ILE ILE A . n A 1 195 GLN 195 219 219 GLN GLN A . n A 1 196 PRO 196 220 220 PRO PRO A . n A 1 197 GLY 197 221 221 GLY GLY A . n A 1 198 ALA 198 222 222 ALA ALA A . n A 1 199 PHE 199 223 223 PHE PHE A . n A 1 200 LYS 200 224 224 LYS LYS A . n A 1 201 GLU 201 225 225 GLU GLU A . n A 1 202 ILE 202 226 226 ILE ILE A . n A 1 203 ARG 203 227 227 ARG ARG A . n A 1 204 LEU 204 228 228 LEU LEU A . n A 1 205 LYS 205 229 229 LYS LYS A . n A 1 206 GLU 206 230 230 GLU GLU A . n A 1 207 LEU 207 231 231 LEU LEU A . n A 1 208 ALA 208 232 232 ALA ALA A . n A 1 209 LEU 209 233 233 LEU LEU A . n A 1 210 ASP 210 234 234 ASP ASP A . n A 1 211 THR 211 235 235 THR THR A . n A 1 212 ASN 212 236 236 ASN ASN A . n A 1 213 GLN 213 237 237 GLN GLN A . n A 1 214 LEU 214 238 238 LEU LEU A . n A 1 215 LYS 215 239 239 LYS LYS A . n A 1 216 SER 216 240 240 SER SER A . n A 1 217 VAL 217 241 241 VAL VAL A . n A 1 218 PRO 218 242 242 PRO PRO A . n A 1 219 ASP 219 243 243 ASP ASP A . n A 1 220 GLY 220 244 244 GLY GLY A . n A 1 221 ILE 221 245 245 ILE ILE A . n A 1 222 PHE 222 246 246 PHE PHE A . n A 1 223 ASP 223 247 247 ASP ASP A . n A 1 224 ARG 224 248 248 ARG ARG A . n A 1 225 LEU 225 249 249 LEU LEU A . n A 1 226 THR 226 250 250 THR THR A . n A 1 227 SER 227 251 251 SER SER A . n A 1 228 LEU 228 252 252 LEU LEU A . n A 1 229 GLN 229 253 253 GLN GLN A . n A 1 230 LYS 230 254 254 LYS LYS A . n A 1 231 ILE 231 255 255 ILE ILE A . n A 1 232 TRP 232 256 256 TRP TRP A . n A 1 233 LEU 233 257 257 LEU LEU A . n A 1 234 HIS 234 258 258 HIS HIS A . n A 1 235 THR 235 259 259 THR THR A . n A 1 236 ASN 236 260 260 ASN ASN A . n A 1 237 PRO 237 261 261 PRO PRO A . n A 1 238 TRP 238 262 262 TRP TRP A . n A 1 239 ASP 239 263 263 ASP ASP A . n A 1 240 CYS 240 264 264 CYS CYS A . n A 1 241 SER 241 265 265 SER SER A . n A 1 242 CYS 242 266 266 CYS CYS A . n A 1 243 PRO 243 267 267 PRO PRO A . n A 1 244 ARG 244 268 268 ARG ARG A . n A 1 245 ILE 245 269 269 ILE ILE A . n A 1 246 ASP 246 270 270 ASP ASP A . n A 1 247 TYR 247 271 271 TYR TYR A . n A 1 248 LEU 248 272 272 LEU LEU A . n A 1 249 SER 249 273 273 SER SER A . n A 1 250 ARG 250 274 274 ARG ARG A . n A 1 251 TRP 251 275 275 TRP TRP A . n A 1 252 LEU 252 276 276 LEU LEU A . n A 1 253 ASN 253 277 277 ASN ASN A . n A 1 254 LYS 254 278 278 LYS LYS A . n A 1 255 ASN 255 279 279 ASN ASN A . n A 1 256 SER 256 280 280 SER SER A . n A 1 257 GLN 257 281 281 GLN GLN A . n A 1 258 LYS 258 282 282 LYS LYS A . n A 1 259 GLU 259 283 283 GLU GLU A . n A 1 260 GLN 260 284 284 GLN GLN A . n A 1 261 GLY 261 285 285 GLY GLY A . n A 1 262 SER 262 286 286 SER SER A . n A 1 263 ALA 263 287 287 ALA ALA A . n A 1 264 LYS 264 288 288 LYS LYS A . n A 1 265 CYS 265 289 289 CYS CYS A . n A 1 266 SER 266 290 290 SER SER A . n A 1 267 GLY 267 291 291 GLY GLY A . n A 1 268 SER 268 292 292 SER SER A . n A 1 269 GLY 269 293 293 GLY GLY A . n A 1 270 LYS 270 294 294 LYS LYS A . n A 1 271 PRO 271 295 295 PRO PRO A . n A 1 272 VAL 272 296 296 VAL VAL A . n A 1 273 ARG 273 297 297 ARG ARG A . n A 1 274 SER 274 298 298 SER SER A . n A 1 275 ILE 275 299 299 ILE ILE A . n A 1 276 ILE 276 300 300 ILE ILE A . n A 1 277 CYS 277 301 301 CYS CYS A . n A 1 278 PRO 278 302 302 PRO PRO A . n A 1 279 THR 279 303 303 THR THR A . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 701 n B 2 NAG 2 B NAG 2 A NAG 703 n B 2 BMA 3 B BMA 3 A BMA 704 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 801 801 NAG NAG A . D 4 FUL 1 805 702 FUL FUL A . E 5 SO4 1 806 901 SO4 SO4 A . F 6 HOH 1 901 904 HOH HOH A . F 6 HOH 2 902 905 HOH HOH A . F 6 HOH 3 903 906 HOH HOH A . F 6 HOH 4 904 907 HOH HOH A . F 6 HOH 5 905 908 HOH HOH A . F 6 HOH 6 906 909 HOH HOH A . F 6 HOH 7 907 911 HOH HOH A . F 6 HOH 8 908 912 HOH HOH A . F 6 HOH 9 909 913 HOH HOH A . F 6 HOH 10 910 914 HOH HOH A . F 6 HOH 11 911 915 HOH HOH A . F 6 HOH 12 912 916 HOH HOH A . F 6 HOH 13 913 918 HOH HOH A . F 6 HOH 14 914 919 HOH HOH A . F 6 HOH 15 915 920 HOH HOH A . F 6 HOH 16 916 921 HOH HOH A . F 6 HOH 17 917 922 HOH HOH A . F 6 HOH 18 918 923 HOH HOH A . F 6 HOH 19 919 924 HOH HOH A . F 6 HOH 20 920 925 HOH HOH A . F 6 HOH 21 921 926 HOH HOH A . F 6 HOH 22 922 927 HOH HOH A . F 6 HOH 23 923 928 HOH HOH A . F 6 HOH 24 924 929 HOH HOH A . F 6 HOH 25 925 930 HOH HOH A . F 6 HOH 26 926 931 HOH HOH A . F 6 HOH 27 927 932 HOH HOH A . F 6 HOH 28 928 933 HOH HOH A . F 6 HOH 29 929 934 HOH HOH A . F 6 HOH 30 930 935 HOH HOH A . F 6 HOH 31 931 936 HOH HOH A . F 6 HOH 32 932 937 HOH HOH A . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id FUL _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 805 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O1 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id D _pdbx_unobs_or_zero_occ_atoms.label_comp_id FUL _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O1 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP phasing . ? 2 CNS refinement . ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 3UL8 _cell.length_a 32.040 _cell.length_b 50.500 _cell.length_c 192.780 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UL8 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3UL8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 50.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '0.1M Bis-Tris(pH5.5), 36% PEG 1000, 0.2M Lithium sulfate, VAPOR DIFFUSION, temperature 296K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-04-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 4A' _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 3UL8 _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.45 _reflns.number_obs 11557 _reflns.number_all ? _reflns.percent_possible_obs 94.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3UL8 _refine.ls_number_reflns_obs 10887 _refine.ls_number_reflns_all 10887 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2401 _refine.ls_R_factor_R_free 0.2996 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 568 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 2Z62 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'maximum likelihood' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2196 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 68 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 2296 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 50 # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.59 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _database_PDB_matrix.entry_id 3UL8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3UL8 _struct.title 'Crystal structure of the TV3 mutant V134L' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UL8 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'LRR, protein binding, MD-2, extracellular matrix, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TLR4_HUMAN O00206 1 ;EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL ; 27 ? 2 UNP Q4G1L2_EPTBU Q4G1L2 1 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICP 126 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UL8 A 3 ? 204 ? O00206 27 ? 228 ? 27 228 2 2 3UL8 A 205 ? 278 ? Q4G1L2 126 ? 199 ? 229 302 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UL8 LEU A 110 ? UNP O00206 VAL 134 'engineered mutation' 134 1 2 3UL8 THR A 279 ? UNP Q4G1L2 ? ? 'expression tag' 303 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 116 ? PHE A 120 ? SER A 140 PHE A 144 5 ? 5 HELX_P HELX_P2 2 PRO A 144 ? LEU A 150 ? PRO A 168 LEU A 174 5 ? 7 HELX_P HELX_P3 3 LEU A 171 ? HIS A 175 ? LEU A 195 HIS A 199 5 ? 5 HELX_P HELX_P4 4 ILE A 245 ? ASN A 255 ? ILE A 269 ASN A 279 1 ? 11 HELX_P HELX_P5 5 PRO A 271 ? ILE A 275 ? PRO A 295 ILE A 299 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 16 SG ? ? A CYS 29 A CYS 40 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf2 disulf ? ? A CYS 240 SG ? ? ? 1_555 A CYS 265 SG ? ? A CYS 264 A CYS 289 1_555 ? ? ? ? ? ? ? 2.022 ? ? disulf3 disulf ? ? A CYS 242 SG ? ? ? 1_555 A CYS 277 SG ? ? A CYS 266 A CYS 301 1_555 ? ? ? ? ? ? ? 2.040 ? ? covale1 covale one ? A ASN 11 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 35 B NAG 1 1_555 ? ? ? ? ? ? ? 1.452 ? N-Glycosylation covale2 covale one ? A ASN 149 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 173 A NAG 801 1_555 ? ? ? ? ? ? ? 1.457 ? N-Glycosylation covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale4 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.399 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG B . ? ASN A 11 ? NAG B 1 ? 1_555 ASN A 35 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG C . ? ASN A 149 ? NAG A 801 ? 1_555 ASN A 173 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 CYS A 5 ? CYS A 16 ? CYS A 29 ? 1_555 CYS A 40 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 240 ? CYS A 265 ? CYS A 264 ? 1_555 CYS A 289 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 242 ? CYS A 277 ? CYS A 266 ? 1_555 CYS A 301 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id CYS _struct_mon_prot_cis.label_seq_id 242 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id CYS _struct_mon_prot_cis.auth_seq_id 266 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 243 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 267 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.53 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 12 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? parallel A 9 10 ? parallel A 10 11 ? parallel A 11 12 ? parallel B 1 2 ? parallel C 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 6 ? VAL A 9 ? VAL A 30 VAL A 33 A 2 THR A 13 ? GLN A 15 ? THR A 37 GLN A 39 A 3 ASN A 34 ? ASP A 36 ? ASN A 58 ASP A 60 A 4 VAL A 58 ? ASP A 60 ? VAL A 82 ASP A 84 A 5 THR A 82 ? ILE A 84 ? THR A 106 ILE A 108 A 6 LYS A 106 ? VAL A 108 ? LYS A 130 VAL A 132 A 7 GLU A 130 ? ASN A 132 ? GLU A 154 ASN A 156 A 8 HIS A 155 ? ASP A 157 ? HIS A 179 ASP A 181 A 9 LEU A 182 ? ASP A 185 ? LEU A 206 ASP A 209 A 10 LEU A 204 ? ALA A 208 ? LEU A 228 ALA A 232 A 11 LYS A 230 ? TRP A 232 ? LYS A 254 TRP A 256 A 12 GLU A 259 ? GLN A 260 ? GLU A 283 GLN A 284 B 1 HIS A 44 ? LEU A 45 ? HIS A 68 LEU A 69 B 2 THR A 68 ? ILE A 69 ? THR A 92 ILE A 93 C 1 SER A 165 ? ILE A 166 ? SER A 189 ILE A 190 C 2 PHE A 193 ? ILE A 194 ? PHE A 217 ILE A 218 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 6 ? N VAL A 30 O GLN A 15 ? O GLN A 39 A 2 3 N TYR A 14 ? N TYR A 38 O ASN A 34 ? O ASN A 58 A 3 4 N LEU A 35 ? N LEU A 59 O VAL A 58 ? O VAL A 82 A 4 5 N LEU A 59 ? N LEU A 83 O THR A 82 ? O THR A 106 A 5 6 N LEU A 83 ? N LEU A 107 O LYS A 106 ? O LYS A 130 A 6 7 N LEU A 107 ? N LEU A 131 O GLU A 130 ? O GLU A 154 A 7 8 N LEU A 131 ? N LEU A 155 O ASP A 157 ? O ASP A 181 A 8 9 N LEU A 156 ? N LEU A 180 O SER A 183 ? O SER A 207 A 9 10 N LEU A 184 ? N LEU A 208 O GLU A 206 ? O GLU A 230 A 10 11 N LEU A 207 ? N LEU A 231 O LYS A 230 ? O LYS A 254 A 11 12 N ILE A 231 ? N ILE A 255 O GLN A 260 ? O GLN A 284 B 1 2 N LEU A 45 ? N LEU A 69 O THR A 68 ? O THR A 92 C 1 2 N ILE A 166 ? N ILE A 190 O PHE A 193 ? O PHE A 217 # _pdbx_entry_details.sequence_details 'THE FUSION PROTEIN OF TLR4 (UNP RESIDUES 27-228) AND VLRB.61 (UNP RESIDUES 126-199)' _pdbx_entry_details.entry_id 3UL8 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 27 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 CYS _pdbx_validate_close_contact.auth_seq_id_2 29 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLU _pdbx_validate_rmsd_angle.auth_seq_id_1 27 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 28 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 28 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 115.33 _pdbx_validate_rmsd_angle.angle_target_value 128.40 _pdbx_validate_rmsd_angle.angle_deviation -13.07 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 28 ? ? 23.10 -40.56 2 1 PRO A 34 ? ? -38.00 123.89 3 1 ASN A 35 ? ? 55.15 19.42 4 1 ILE A 36 ? ? -131.60 -64.52 5 1 ASN A 51 ? ? -94.83 48.61 6 1 PRO A 65 ? ? -68.68 77.71 7 1 ARG A 67 ? ? 59.68 -58.48 8 1 PHE A 77 ? ? -146.97 46.31 9 1 PRO A 78 ? ? -66.52 5.77 10 1 GLU A 89 ? ? 58.98 17.38 11 1 SER A 100 ? ? -67.15 -72.94 12 1 LEU A 101 ? ? -24.26 78.96 13 1 PRO A 113 ? ? -68.73 53.70 14 1 SER A 116 ? ? -176.09 123.18 15 1 PRO A 145 ? ? -67.50 61.07 16 1 LEU A 177 ? ? -51.81 106.39 17 1 ASN A 185 ? ? -116.03 -144.10 18 1 PRO A 214 ? ? -76.89 41.74 19 1 ASN A 236 ? ? -113.38 -142.06 20 1 ASP A 247 ? ? -56.80 -74.42 21 1 CYS A 264 ? ? -92.29 31.80 22 1 SER A 298 ? ? -97.19 32.52 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 149 A ASN 173 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 11 A ASN 35 ? ASN 'GLYCOSYLATION SITE' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 25 ? A GLY 1 2 1 Y 1 A SER 26 ? A SER 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 FUL C1 C N S 112 FUL C2 C N S 113 FUL O2 O N N 114 FUL C3 C N R 115 FUL O3 O N N 116 FUL C4 C N S 117 FUL O4 O N N 118 FUL C5 C N S 119 FUL C6 C N N 120 FUL O5 O N N 121 FUL O1 O N N 122 FUL H1 H N N 123 FUL H2 H N N 124 FUL HO2 H N N 125 FUL H3 H N N 126 FUL HO3 H N N 127 FUL H4 H N N 128 FUL HO4 H N N 129 FUL H5 H N N 130 FUL H61 H N N 131 FUL H62 H N N 132 FUL H63 H N N 133 FUL HO1 H N N 134 GLN N N N N 135 GLN CA C N S 136 GLN C C N N 137 GLN O O N N 138 GLN CB C N N 139 GLN CG C N N 140 GLN CD C N N 141 GLN OE1 O N N 142 GLN NE2 N N N 143 GLN OXT O N N 144 GLN H H N N 145 GLN H2 H N N 146 GLN HA H N N 147 GLN HB2 H N N 148 GLN HB3 H N N 149 GLN HG2 H N N 150 GLN HG3 H N N 151 GLN HE21 H N N 152 GLN HE22 H N N 153 GLN HXT H N N 154 GLU N N N N 155 GLU CA C N S 156 GLU C C N N 157 GLU O O N N 158 GLU CB C N N 159 GLU CG C N N 160 GLU CD C N N 161 GLU OE1 O N N 162 GLU OE2 O N N 163 GLU OXT O N N 164 GLU H H N N 165 GLU H2 H N N 166 GLU HA H N N 167 GLU HB2 H N N 168 GLU HB3 H N N 169 GLU HG2 H N N 170 GLU HG3 H N N 171 GLU HE2 H N N 172 GLU HXT H N N 173 GLY N N N N 174 GLY CA C N N 175 GLY C C N N 176 GLY O O N N 177 GLY OXT O N N 178 GLY H H N N 179 GLY H2 H N N 180 GLY HA2 H N N 181 GLY HA3 H N N 182 GLY HXT H N N 183 HIS N N N N 184 HIS CA C N S 185 HIS C C N N 186 HIS O O N N 187 HIS CB C N N 188 HIS CG C Y N 189 HIS ND1 N Y N 190 HIS CD2 C Y N 191 HIS CE1 C Y N 192 HIS NE2 N Y N 193 HIS OXT O N N 194 HIS H H N N 195 HIS H2 H N N 196 HIS HA H N N 197 HIS HB2 H N N 198 HIS HB3 H N N 199 HIS HD1 H N N 200 HIS HD2 H N N 201 HIS HE1 H N N 202 HIS HE2 H N N 203 HIS HXT H N N 204 HOH O O N N 205 HOH H1 H N N 206 HOH H2 H N N 207 ILE N N N N 208 ILE CA C N S 209 ILE C C N N 210 ILE O O N N 211 ILE CB C N S 212 ILE CG1 C N N 213 ILE CG2 C N N 214 ILE CD1 C N N 215 ILE OXT O N N 216 ILE H H N N 217 ILE H2 H N N 218 ILE HA H N N 219 ILE HB H N N 220 ILE HG12 H N N 221 ILE HG13 H N N 222 ILE HG21 H N N 223 ILE HG22 H N N 224 ILE HG23 H N N 225 ILE HD11 H N N 226 ILE HD12 H N N 227 ILE HD13 H N N 228 ILE HXT H N N 229 LEU N N N N 230 LEU CA C N S 231 LEU C C N N 232 LEU O O N N 233 LEU CB C N N 234 LEU CG C N N 235 LEU CD1 C N N 236 LEU CD2 C N N 237 LEU OXT O N N 238 LEU H H N N 239 LEU H2 H N N 240 LEU HA H N N 241 LEU HB2 H N N 242 LEU HB3 H N N 243 LEU HG H N N 244 LEU HD11 H N N 245 LEU HD12 H N N 246 LEU HD13 H N N 247 LEU HD21 H N N 248 LEU HD22 H N N 249 LEU HD23 H N N 250 LEU HXT H N N 251 LYS N N N N 252 LYS CA C N S 253 LYS C C N N 254 LYS O O N N 255 LYS CB C N N 256 LYS CG C N N 257 LYS CD C N N 258 LYS CE C N N 259 LYS NZ N N N 260 LYS OXT O N N 261 LYS H H N N 262 LYS H2 H N N 263 LYS HA H N N 264 LYS HB2 H N N 265 LYS HB3 H N N 266 LYS HG2 H N N 267 LYS HG3 H N N 268 LYS HD2 H N N 269 LYS HD3 H N N 270 LYS HE2 H N N 271 LYS HE3 H N N 272 LYS HZ1 H N N 273 LYS HZ2 H N N 274 LYS HZ3 H N N 275 LYS HXT H N N 276 MET N N N N 277 MET CA C N S 278 MET C C N N 279 MET O O N N 280 MET CB C N N 281 MET CG C N N 282 MET SD S N N 283 MET CE C N N 284 MET OXT O N N 285 MET H H N N 286 MET H2 H N N 287 MET HA H N N 288 MET HB2 H N N 289 MET HB3 H N N 290 MET HG2 H N N 291 MET HG3 H N N 292 MET HE1 H N N 293 MET HE2 H N N 294 MET HE3 H N N 295 MET HXT H N N 296 NAG C1 C N R 297 NAG C2 C N R 298 NAG C3 C N R 299 NAG C4 C N S 300 NAG C5 C N R 301 NAG C6 C N N 302 NAG C7 C N N 303 NAG C8 C N N 304 NAG N2 N N N 305 NAG O1 O N N 306 NAG O3 O N N 307 NAG O4 O N N 308 NAG O5 O N N 309 NAG O6 O N N 310 NAG O7 O N N 311 NAG H1 H N N 312 NAG H2 H N N 313 NAG H3 H N N 314 NAG H4 H N N 315 NAG H5 H N N 316 NAG H61 H N N 317 NAG H62 H N N 318 NAG H81 H N N 319 NAG H82 H N N 320 NAG H83 H N N 321 NAG HN2 H N N 322 NAG HO1 H N N 323 NAG HO3 H N N 324 NAG HO4 H N N 325 NAG HO6 H N N 326 PHE N N N N 327 PHE CA C N S 328 PHE C C N N 329 PHE O O N N 330 PHE CB C N N 331 PHE CG C Y N 332 PHE CD1 C Y N 333 PHE CD2 C Y N 334 PHE CE1 C Y N 335 PHE CE2 C Y N 336 PHE CZ C Y N 337 PHE OXT O N N 338 PHE H H N N 339 PHE H2 H N N 340 PHE HA H N N 341 PHE HB2 H N N 342 PHE HB3 H N N 343 PHE HD1 H N N 344 PHE HD2 H N N 345 PHE HE1 H N N 346 PHE HE2 H N N 347 PHE HZ H N N 348 PHE HXT H N N 349 PRO N N N N 350 PRO CA C N S 351 PRO C C N N 352 PRO O O N N 353 PRO CB C N N 354 PRO CG C N N 355 PRO CD C N N 356 PRO OXT O N N 357 PRO H H N N 358 PRO HA H N N 359 PRO HB2 H N N 360 PRO HB3 H N N 361 PRO HG2 H N N 362 PRO HG3 H N N 363 PRO HD2 H N N 364 PRO HD3 H N N 365 PRO HXT H N N 366 SER N N N N 367 SER CA C N S 368 SER C C N N 369 SER O O N N 370 SER CB C N N 371 SER OG O N N 372 SER OXT O N N 373 SER H H N N 374 SER H2 H N N 375 SER HA H N N 376 SER HB2 H N N 377 SER HB3 H N N 378 SER HG H N N 379 SER HXT H N N 380 SO4 S S N N 381 SO4 O1 O N N 382 SO4 O2 O N N 383 SO4 O3 O N N 384 SO4 O4 O N N 385 THR N N N N 386 THR CA C N S 387 THR C C N N 388 THR O O N N 389 THR CB C N R 390 THR OG1 O N N 391 THR CG2 C N N 392 THR OXT O N N 393 THR H H N N 394 THR H2 H N N 395 THR HA H N N 396 THR HB H N N 397 THR HG1 H N N 398 THR HG21 H N N 399 THR HG22 H N N 400 THR HG23 H N N 401 THR HXT H N N 402 TRP N N N N 403 TRP CA C N S 404 TRP C C N N 405 TRP O O N N 406 TRP CB C N N 407 TRP CG C Y N 408 TRP CD1 C Y N 409 TRP CD2 C Y N 410 TRP NE1 N Y N 411 TRP CE2 C Y N 412 TRP CE3 C Y N 413 TRP CZ2 C Y N 414 TRP CZ3 C Y N 415 TRP CH2 C Y N 416 TRP OXT O N N 417 TRP H H N N 418 TRP H2 H N N 419 TRP HA H N N 420 TRP HB2 H N N 421 TRP HB3 H N N 422 TRP HD1 H N N 423 TRP HE1 H N N 424 TRP HE3 H N N 425 TRP HZ2 H N N 426 TRP HZ3 H N N 427 TRP HH2 H N N 428 TRP HXT H N N 429 TYR N N N N 430 TYR CA C N S 431 TYR C C N N 432 TYR O O N N 433 TYR CB C N N 434 TYR CG C Y N 435 TYR CD1 C Y N 436 TYR CD2 C Y N 437 TYR CE1 C Y N 438 TYR CE2 C Y N 439 TYR CZ C Y N 440 TYR OH O N N 441 TYR OXT O N N 442 TYR H H N N 443 TYR H2 H N N 444 TYR HA H N N 445 TYR HB2 H N N 446 TYR HB3 H N N 447 TYR HD1 H N N 448 TYR HD2 H N N 449 TYR HE1 H N N 450 TYR HE2 H N N 451 TYR HH H N N 452 TYR HXT H N N 453 VAL N N N N 454 VAL CA C N S 455 VAL C C N N 456 VAL O O N N 457 VAL CB C N N 458 VAL CG1 C N N 459 VAL CG2 C N N 460 VAL OXT O N N 461 VAL H H N N 462 VAL H2 H N N 463 VAL HA H N N 464 VAL HB H N N 465 VAL HG11 H N N 466 VAL HG12 H N N 467 VAL HG13 H N N 468 VAL HG21 H N N 469 VAL HG22 H N N 470 VAL HG23 H N N 471 VAL HXT H N N 472 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 FUL C1 C2 sing N N 107 FUL C1 O5 sing N N 108 FUL C1 O1 sing N N 109 FUL C1 H1 sing N N 110 FUL C2 O2 sing N N 111 FUL C2 C3 sing N N 112 FUL C2 H2 sing N N 113 FUL O2 HO2 sing N N 114 FUL C3 O3 sing N N 115 FUL C3 C4 sing N N 116 FUL C3 H3 sing N N 117 FUL O3 HO3 sing N N 118 FUL C4 O4 sing N N 119 FUL C4 C5 sing N N 120 FUL C4 H4 sing N N 121 FUL O4 HO4 sing N N 122 FUL C5 C6 sing N N 123 FUL C5 O5 sing N N 124 FUL C5 H5 sing N N 125 FUL C6 H61 sing N N 126 FUL C6 H62 sing N N 127 FUL C6 H63 sing N N 128 FUL O1 HO1 sing N N 129 GLN N CA sing N N 130 GLN N H sing N N 131 GLN N H2 sing N N 132 GLN CA C sing N N 133 GLN CA CB sing N N 134 GLN CA HA sing N N 135 GLN C O doub N N 136 GLN C OXT sing N N 137 GLN CB CG sing N N 138 GLN CB HB2 sing N N 139 GLN CB HB3 sing N N 140 GLN CG CD sing N N 141 GLN CG HG2 sing N N 142 GLN CG HG3 sing N N 143 GLN CD OE1 doub N N 144 GLN CD NE2 sing N N 145 GLN NE2 HE21 sing N N 146 GLN NE2 HE22 sing N N 147 GLN OXT HXT sing N N 148 GLU N CA sing N N 149 GLU N H sing N N 150 GLU N H2 sing N N 151 GLU CA C sing N N 152 GLU CA CB sing N N 153 GLU CA HA sing N N 154 GLU C O doub N N 155 GLU C OXT sing N N 156 GLU CB CG sing N N 157 GLU CB HB2 sing N N 158 GLU CB HB3 sing N N 159 GLU CG CD sing N N 160 GLU CG HG2 sing N N 161 GLU CG HG3 sing N N 162 GLU CD OE1 doub N N 163 GLU CD OE2 sing N N 164 GLU OE2 HE2 sing N N 165 GLU OXT HXT sing N N 166 GLY N CA sing N N 167 GLY N H sing N N 168 GLY N H2 sing N N 169 GLY CA C sing N N 170 GLY CA HA2 sing N N 171 GLY CA HA3 sing N N 172 GLY C O doub N N 173 GLY C OXT sing N N 174 GLY OXT HXT sing N N 175 HIS N CA sing N N 176 HIS N H sing N N 177 HIS N H2 sing N N 178 HIS CA C sing N N 179 HIS CA CB sing N N 180 HIS CA HA sing N N 181 HIS C O doub N N 182 HIS C OXT sing N N 183 HIS CB CG sing N N 184 HIS CB HB2 sing N N 185 HIS CB HB3 sing N N 186 HIS CG ND1 sing Y N 187 HIS CG CD2 doub Y N 188 HIS ND1 CE1 doub Y N 189 HIS ND1 HD1 sing N N 190 HIS CD2 NE2 sing Y N 191 HIS CD2 HD2 sing N N 192 HIS CE1 NE2 sing Y N 193 HIS CE1 HE1 sing N N 194 HIS NE2 HE2 sing N N 195 HIS OXT HXT sing N N 196 HOH O H1 sing N N 197 HOH O H2 sing N N 198 ILE N CA sing N N 199 ILE N H sing N N 200 ILE N H2 sing N N 201 ILE CA C sing N N 202 ILE CA CB sing N N 203 ILE CA HA sing N N 204 ILE C O doub N N 205 ILE C OXT sing N N 206 ILE CB CG1 sing N N 207 ILE CB CG2 sing N N 208 ILE CB HB sing N N 209 ILE CG1 CD1 sing N N 210 ILE CG1 HG12 sing N N 211 ILE CG1 HG13 sing N N 212 ILE CG2 HG21 sing N N 213 ILE CG2 HG22 sing N N 214 ILE CG2 HG23 sing N N 215 ILE CD1 HD11 sing N N 216 ILE CD1 HD12 sing N N 217 ILE CD1 HD13 sing N N 218 ILE OXT HXT sing N N 219 LEU N CA sing N N 220 LEU N H sing N N 221 LEU N H2 sing N N 222 LEU CA C sing N N 223 LEU CA CB sing N N 224 LEU CA HA sing N N 225 LEU C O doub N N 226 LEU C OXT sing N N 227 LEU CB CG sing N N 228 LEU CB HB2 sing N N 229 LEU CB HB3 sing N N 230 LEU CG CD1 sing N N 231 LEU CG CD2 sing N N 232 LEU CG HG sing N N 233 LEU CD1 HD11 sing N N 234 LEU CD1 HD12 sing N N 235 LEU CD1 HD13 sing N N 236 LEU CD2 HD21 sing N N 237 LEU CD2 HD22 sing N N 238 LEU CD2 HD23 sing N N 239 LEU OXT HXT sing N N 240 LYS N CA sing N N 241 LYS N H sing N N 242 LYS N H2 sing N N 243 LYS CA C sing N N 244 LYS CA CB sing N N 245 LYS CA HA sing N N 246 LYS C O doub N N 247 LYS C OXT sing N N 248 LYS CB CG sing N N 249 LYS CB HB2 sing N N 250 LYS CB HB3 sing N N 251 LYS CG CD sing N N 252 LYS CG HG2 sing N N 253 LYS CG HG3 sing N N 254 LYS CD CE sing N N 255 LYS CD HD2 sing N N 256 LYS CD HD3 sing N N 257 LYS CE NZ sing N N 258 LYS CE HE2 sing N N 259 LYS CE HE3 sing N N 260 LYS NZ HZ1 sing N N 261 LYS NZ HZ2 sing N N 262 LYS NZ HZ3 sing N N 263 LYS OXT HXT sing N N 264 MET N CA sing N N 265 MET N H sing N N 266 MET N H2 sing N N 267 MET CA C sing N N 268 MET CA CB sing N N 269 MET CA HA sing N N 270 MET C O doub N N 271 MET C OXT sing N N 272 MET CB CG sing N N 273 MET CB HB2 sing N N 274 MET CB HB3 sing N N 275 MET CG SD sing N N 276 MET CG HG2 sing N N 277 MET CG HG3 sing N N 278 MET SD CE sing N N 279 MET CE HE1 sing N N 280 MET CE HE2 sing N N 281 MET CE HE3 sing N N 282 MET OXT HXT sing N N 283 NAG C1 C2 sing N N 284 NAG C1 O1 sing N N 285 NAG C1 O5 sing N N 286 NAG C1 H1 sing N N 287 NAG C2 C3 sing N N 288 NAG C2 N2 sing N N 289 NAG C2 H2 sing N N 290 NAG C3 C4 sing N N 291 NAG C3 O3 sing N N 292 NAG C3 H3 sing N N 293 NAG C4 C5 sing N N 294 NAG C4 O4 sing N N 295 NAG C4 H4 sing N N 296 NAG C5 C6 sing N N 297 NAG C5 O5 sing N N 298 NAG C5 H5 sing N N 299 NAG C6 O6 sing N N 300 NAG C6 H61 sing N N 301 NAG C6 H62 sing N N 302 NAG C7 C8 sing N N 303 NAG C7 N2 sing N N 304 NAG C7 O7 doub N N 305 NAG C8 H81 sing N N 306 NAG C8 H82 sing N N 307 NAG C8 H83 sing N N 308 NAG N2 HN2 sing N N 309 NAG O1 HO1 sing N N 310 NAG O3 HO3 sing N N 311 NAG O4 HO4 sing N N 312 NAG O6 HO6 sing N N 313 PHE N CA sing N N 314 PHE N H sing N N 315 PHE N H2 sing N N 316 PHE CA C sing N N 317 PHE CA CB sing N N 318 PHE CA HA sing N N 319 PHE C O doub N N 320 PHE C OXT sing N N 321 PHE CB CG sing N N 322 PHE CB HB2 sing N N 323 PHE CB HB3 sing N N 324 PHE CG CD1 doub Y N 325 PHE CG CD2 sing Y N 326 PHE CD1 CE1 sing Y N 327 PHE CD1 HD1 sing N N 328 PHE CD2 CE2 doub Y N 329 PHE CD2 HD2 sing N N 330 PHE CE1 CZ doub Y N 331 PHE CE1 HE1 sing N N 332 PHE CE2 CZ sing Y N 333 PHE CE2 HE2 sing N N 334 PHE CZ HZ sing N N 335 PHE OXT HXT sing N N 336 PRO N CA sing N N 337 PRO N CD sing N N 338 PRO N H sing N N 339 PRO CA C sing N N 340 PRO CA CB sing N N 341 PRO CA HA sing N N 342 PRO C O doub N N 343 PRO C OXT sing N N 344 PRO CB CG sing N N 345 PRO CB HB2 sing N N 346 PRO CB HB3 sing N N 347 PRO CG CD sing N N 348 PRO CG HG2 sing N N 349 PRO CG HG3 sing N N 350 PRO CD HD2 sing N N 351 PRO CD HD3 sing N N 352 PRO OXT HXT sing N N 353 SER N CA sing N N 354 SER N H sing N N 355 SER N H2 sing N N 356 SER CA C sing N N 357 SER CA CB sing N N 358 SER CA HA sing N N 359 SER C O doub N N 360 SER C OXT sing N N 361 SER CB OG sing N N 362 SER CB HB2 sing N N 363 SER CB HB3 sing N N 364 SER OG HG sing N N 365 SER OXT HXT sing N N 366 SO4 S O1 doub N N 367 SO4 S O2 doub N N 368 SO4 S O3 sing N N 369 SO4 S O4 sing N N 370 THR N CA sing N N 371 THR N H sing N N 372 THR N H2 sing N N 373 THR CA C sing N N 374 THR CA CB sing N N 375 THR CA HA sing N N 376 THR C O doub N N 377 THR C OXT sing N N 378 THR CB OG1 sing N N 379 THR CB CG2 sing N N 380 THR CB HB sing N N 381 THR OG1 HG1 sing N N 382 THR CG2 HG21 sing N N 383 THR CG2 HG22 sing N N 384 THR CG2 HG23 sing N N 385 THR OXT HXT sing N N 386 TRP N CA sing N N 387 TRP N H sing N N 388 TRP N H2 sing N N 389 TRP CA C sing N N 390 TRP CA CB sing N N 391 TRP CA HA sing N N 392 TRP C O doub N N 393 TRP C OXT sing N N 394 TRP CB CG sing N N 395 TRP CB HB2 sing N N 396 TRP CB HB3 sing N N 397 TRP CG CD1 doub Y N 398 TRP CG CD2 sing Y N 399 TRP CD1 NE1 sing Y N 400 TRP CD1 HD1 sing N N 401 TRP CD2 CE2 doub Y N 402 TRP CD2 CE3 sing Y N 403 TRP NE1 CE2 sing Y N 404 TRP NE1 HE1 sing N N 405 TRP CE2 CZ2 sing Y N 406 TRP CE3 CZ3 doub Y N 407 TRP CE3 HE3 sing N N 408 TRP CZ2 CH2 doub Y N 409 TRP CZ2 HZ2 sing N N 410 TRP CZ3 CH2 sing Y N 411 TRP CZ3 HZ3 sing N N 412 TRP CH2 HH2 sing N N 413 TRP OXT HXT sing N N 414 TYR N CA sing N N 415 TYR N H sing N N 416 TYR N H2 sing N N 417 TYR CA C sing N N 418 TYR CA CB sing N N 419 TYR CA HA sing N N 420 TYR C O doub N N 421 TYR C OXT sing N N 422 TYR CB CG sing N N 423 TYR CB HB2 sing N N 424 TYR CB HB3 sing N N 425 TYR CG CD1 doub Y N 426 TYR CG CD2 sing Y N 427 TYR CD1 CE1 sing Y N 428 TYR CD1 HD1 sing N N 429 TYR CD2 CE2 doub Y N 430 TYR CD2 HD2 sing N N 431 TYR CE1 CZ doub Y N 432 TYR CE1 HE1 sing N N 433 TYR CE2 CZ sing Y N 434 TYR CE2 HE2 sing N N 435 TYR CZ OH sing N N 436 TYR OH HH sing N N 437 TYR OXT HXT sing N N 438 VAL N CA sing N N 439 VAL N H sing N N 440 VAL N H2 sing N N 441 VAL CA C sing N N 442 VAL CA CB sing N N 443 VAL CA HA sing N N 444 VAL C O doub N N 445 VAL C OXT sing N N 446 VAL CB CG1 sing N N 447 VAL CB CG2 sing N N 448 VAL CB HB sing N N 449 VAL CG1 HG11 sing N N 450 VAL CG1 HG12 sing N N 451 VAL CG1 HG13 sing N N 452 VAL CG2 HG21 sing N N 453 VAL CG2 HG22 sing N N 454 VAL CG2 HG23 sing N N 455 VAL OXT HXT sing N N 456 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2Z62 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 3UL8 _atom_sites.fract_transf_matrix[1][1] 0.031211 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019802 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005187 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_