data_3UL8
#
_entry.id 3UL8
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.399
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3UL8 pdb_00003ul8 10.2210/pdb3ul8/pdb
RCSB RCSB068894 ? ?
WWPDB D_1000068894 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2012-04-04
2 'Structure model' 1 1 2017-08-23
3 'Structure model' 2 0 2018-01-31
4 'Structure model' 3 0 2020-07-29
5 'Structure model' 3 1 2023-11-01
6 'Structure model' 3 2 2024-11-20
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Refinement description'
2 2 'Structure model' 'Source and taxonomy'
3 3 'Structure model' Advisory
4 3 'Structure model' 'Atomic model'
5 3 'Structure model' 'Derived calculations'
6 3 'Structure model' 'Non-polymer description'
7 3 'Structure model' 'Structure summary'
8 4 'Structure model' Advisory
9 4 'Structure model' 'Atomic model'
10 4 'Structure model' 'Data collection'
11 4 'Structure model' 'Database references'
12 4 'Structure model' 'Derived calculations'
13 4 'Structure model' 'Structure summary'
14 5 'Structure model' 'Data collection'
15 5 'Structure model' 'Database references'
16 5 'Structure model' 'Refinement description'
17 5 'Structure model' 'Structure summary'
18 6 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' entity_src_gen
2 2 'Structure model' software
3 3 'Structure model' atom_site
4 3 'Structure model' entity
5 3 'Structure model' pdbx_unobs_or_zero_occ_atoms
6 3 'Structure model' struct_site_gen
7 4 'Structure model' atom_site
8 4 'Structure model' chem_comp
9 4 'Structure model' entity
10 4 'Structure model' pdbx_branch_scheme
11 4 'Structure model' pdbx_chem_comp_identifier
12 4 'Structure model' pdbx_entity_branch
13 4 'Structure model' pdbx_entity_branch_descriptor
14 4 'Structure model' pdbx_entity_branch_link
15 4 'Structure model' pdbx_entity_branch_list
16 4 'Structure model' pdbx_entity_nonpoly
17 4 'Structure model' pdbx_nonpoly_scheme
18 4 'Structure model' pdbx_struct_assembly_gen
19 4 'Structure model' pdbx_unobs_or_zero_occ_atoms
20 4 'Structure model' struct_asym
21 4 'Structure model' struct_conn
22 4 'Structure model' struct_ref_seq_dif
23 4 'Structure model' struct_site
24 4 'Structure model' struct_site_gen
25 5 'Structure model' chem_comp
26 5 'Structure model' chem_comp_atom
27 5 'Structure model' chem_comp_bond
28 5 'Structure model' database_2
29 5 'Structure model' pdbx_initial_refinement_model
30 6 'Structure model' pdbx_entry_details
31 6 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_atom_site.B_iso_or_equiv'
2 3 'Structure model' '_atom_site.Cartn_x'
3 3 'Structure model' '_atom_site.Cartn_y'
4 3 'Structure model' '_atom_site.Cartn_z'
5 3 'Structure model' '_atom_site.auth_atom_id'
6 3 'Structure model' '_atom_site.auth_comp_id'
7 3 'Structure model' '_atom_site.label_atom_id'
8 3 'Structure model' '_atom_site.label_comp_id'
9 3 'Structure model' '_atom_site.type_symbol'
10 3 'Structure model' '_chem_comp.formula'
11 3 'Structure model' '_chem_comp.id'
12 3 'Structure model' '_chem_comp.name'
13 3 'Structure model' '_chem_comp.pdbx_synonyms'
14 3 'Structure model' '_entity.formula_weight'
15 3 'Structure model' '_entity.pdbx_description'
16 3 'Structure model' '_struct_site_gen.auth_comp_id'
17 3 'Structure model' '_struct_site_gen.label_comp_id'
18 4 'Structure model' '_atom_site.B_iso_or_equiv'
19 4 'Structure model' '_atom_site.Cartn_x'
20 4 'Structure model' '_atom_site.Cartn_y'
21 4 'Structure model' '_atom_site.Cartn_z'
22 4 'Structure model' '_atom_site.auth_asym_id'
23 4 'Structure model' '_atom_site.auth_atom_id'
24 4 'Structure model' '_atom_site.auth_comp_id'
25 4 'Structure model' '_atom_site.auth_seq_id'
26 4 'Structure model' '_atom_site.label_asym_id'
27 4 'Structure model' '_atom_site.label_atom_id'
28 4 'Structure model' '_atom_site.label_comp_id'
29 4 'Structure model' '_atom_site.label_entity_id'
30 4 'Structure model' '_atom_site.type_symbol'
31 4 'Structure model' '_chem_comp.name'
32 4 'Structure model' '_chem_comp.type'
33 4 'Structure model' '_entity.formula_weight'
34 4 'Structure model' '_entity.pdbx_description'
35 4 'Structure model' '_entity.pdbx_number_of_molecules'
36 4 'Structure model' '_entity.type'
37 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
38 4 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_asym_id'
39 4 'Structure model' '_struct_conn.pdbx_dist_value'
40 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
41 4 'Structure model' '_struct_conn.pdbx_role'
42 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
43 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
44 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
45 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
46 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
47 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
48 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'
49 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
50 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
51 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
52 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
53 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
54 4 'Structure model' '_struct_ref_seq_dif.details'
55 5 'Structure model' '_chem_comp.pdbx_synonyms'
56 5 'Structure model' '_database_2.pdbx_DOI'
57 5 'Structure model' '_database_2.pdbx_database_accession'
58 6 'Structure model' '_pdbx_entry_details.has_protein_modification'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3UL8
_pdbx_database_status.recvd_initial_deposition_date 2011-11-10
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 3UL7 . unspecified
PDB 3UL9 . unspecified
PDB 3ULA . unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Kim, H.J.' 1
'Cheong, H.K.' 2
'Jeon, Y.H.' 3
#
_citation.id primary
_citation.title
'Structure-Based Rational Design of a Toll-like Receptor 4 (TLR4) Decoy Receptor with High Binding Affinity for a Target Protein.'
_citation.journal_abbrev 'Plos One'
_citation.journal_volume 7
_citation.page_first e30929
_citation.page_last e30929
_citation.year 2012
_citation.journal_id_ASTM ?
_citation.country US
_citation.journal_id_ISSN 1932-6203
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 22363519
_citation.pdbx_database_id_DOI 10.1371/journal.pone.0030929
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Han, J.' 1 ?
primary 'Kim, H.J.' 2 ?
primary 'Lee, S.C.' 3 ?
primary 'Hong, S.' 4 ?
primary 'Park, K.' 5 ?
primary 'Jeon, Y.H.' 6 ?
primary 'Kim, D.' 7 ?
primary 'Cheong, H.K.' 8 ?
primary 'Kim, H.S.' 9 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Toll-like receptor 4, Variable lymphocyte receptor B' 31400.982 1 ? V134L
'UNP RESIDUES 27-228, UNP RESIDUES 126-199' 'THE FUSION PROTEIN OF TLR4 (UNP RESIDUES 27-228) AND VLRB (UNP RESIDUES 126-199)'
2 branched man
'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1
? ? ? ?
3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ?
4 non-polymer man beta-L-fucopyranose 164.156 1 ? ? ? ?
5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ?
6 water nat water 18.015 32 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name hToll
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;GSEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL
STLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS
NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC
SCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICPT
;
_entity_poly.pdbx_seq_one_letter_code_can
;GSEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL
STLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS
NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC
SCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICPT
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG
4 beta-L-fucopyranose FUL
5 'SULFATE ION' SO4
6 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 SER n
1 3 GLU n
1 4 PRO n
1 5 CYS n
1 6 VAL n
1 7 GLU n
1 8 VAL n
1 9 VAL n
1 10 PRO n
1 11 ASN n
1 12 ILE n
1 13 THR n
1 14 TYR n
1 15 GLN n
1 16 CYS n
1 17 MET n
1 18 GLU n
1 19 LEU n
1 20 ASN n
1 21 PHE n
1 22 TYR n
1 23 LYS n
1 24 ILE n
1 25 PRO n
1 26 ASP n
1 27 ASN n
1 28 LEU n
1 29 PRO n
1 30 PHE n
1 31 SER n
1 32 THR n
1 33 LYS n
1 34 ASN n
1 35 LEU n
1 36 ASP n
1 37 LEU n
1 38 SER n
1 39 PHE n
1 40 ASN n
1 41 PRO n
1 42 LEU n
1 43 ARG n
1 44 HIS n
1 45 LEU n
1 46 GLY n
1 47 SER n
1 48 TYR n
1 49 SER n
1 50 PHE n
1 51 PHE n
1 52 SER n
1 53 PHE n
1 54 PRO n
1 55 GLU n
1 56 LEU n
1 57 GLN n
1 58 VAL n
1 59 LEU n
1 60 ASP n
1 61 LEU n
1 62 SER n
1 63 ARG n
1 64 CYS n
1 65 GLU n
1 66 ILE n
1 67 GLN n
1 68 THR n
1 69 ILE n
1 70 GLU n
1 71 ASP n
1 72 GLY n
1 73 ALA n
1 74 TYR n
1 75 GLN n
1 76 SER n
1 77 LEU n
1 78 SER n
1 79 HIS n
1 80 LEU n
1 81 SER n
1 82 THR n
1 83 LEU n
1 84 ILE n
1 85 LEU n
1 86 THR n
1 87 GLY n
1 88 ASN n
1 89 PRO n
1 90 ILE n
1 91 GLN n
1 92 SER n
1 93 LEU n
1 94 ALA n
1 95 LEU n
1 96 GLY n
1 97 ALA n
1 98 PHE n
1 99 SER n
1 100 GLY n
1 101 LEU n
1 102 SER n
1 103 SER n
1 104 LEU n
1 105 GLN n
1 106 LYS n
1 107 LEU n
1 108 VAL n
1 109 ALA n
1 110 LEU n
1 111 GLU n
1 112 THR n
1 113 ASN n
1 114 LEU n
1 115 ALA n
1 116 SER n
1 117 LEU n
1 118 GLU n
1 119 ASN n
1 120 PHE n
1 121 PRO n
1 122 ILE n
1 123 GLY n
1 124 HIS n
1 125 LEU n
1 126 LYS n
1 127 THR n
1 128 LEU n
1 129 LYS n
1 130 GLU n
1 131 LEU n
1 132 ASN n
1 133 VAL n
1 134 ALA n
1 135 HIS n
1 136 ASN n
1 137 LEU n
1 138 ILE n
1 139 GLN n
1 140 SER n
1 141 PHE n
1 142 LYS n
1 143 LEU n
1 144 PRO n
1 145 GLU n
1 146 TYR n
1 147 PHE n
1 148 SER n
1 149 ASN n
1 150 LEU n
1 151 THR n
1 152 ASN n
1 153 LEU n
1 154 GLU n
1 155 HIS n
1 156 LEU n
1 157 ASP n
1 158 LEU n
1 159 SER n
1 160 SER n
1 161 ASN n
1 162 LYS n
1 163 ILE n
1 164 GLN n
1 165 SER n
1 166 ILE n
1 167 TYR n
1 168 CYS n
1 169 THR n
1 170 ASP n
1 171 LEU n
1 172 ARG n
1 173 VAL n
1 174 LEU n
1 175 HIS n
1 176 GLN n
1 177 MET n
1 178 PRO n
1 179 LEU n
1 180 LEU n
1 181 ASN n
1 182 LEU n
1 183 SER n
1 184 LEU n
1 185 ASP n
1 186 LEU n
1 187 SER n
1 188 LEU n
1 189 ASN n
1 190 PRO n
1 191 MET n
1 192 ASN n
1 193 PHE n
1 194 ILE n
1 195 GLN n
1 196 PRO n
1 197 GLY n
1 198 ALA n
1 199 PHE n
1 200 LYS n
1 201 GLU n
1 202 ILE n
1 203 ARG n
1 204 LEU n
1 205 LYS n
1 206 GLU n
1 207 LEU n
1 208 ALA n
1 209 LEU n
1 210 ASP n
1 211 THR n
1 212 ASN n
1 213 GLN n
1 214 LEU n
1 215 LYS n
1 216 SER n
1 217 VAL n
1 218 PRO n
1 219 ASP n
1 220 GLY n
1 221 ILE n
1 222 PHE n
1 223 ASP n
1 224 ARG n
1 225 LEU n
1 226 THR n
1 227 SER n
1 228 LEU n
1 229 GLN n
1 230 LYS n
1 231 ILE n
1 232 TRP n
1 233 LEU n
1 234 HIS n
1 235 THR n
1 236 ASN n
1 237 PRO n
1 238 TRP n
1 239 ASP n
1 240 CYS n
1 241 SER n
1 242 CYS n
1 243 PRO n
1 244 ARG n
1 245 ILE n
1 246 ASP n
1 247 TYR n
1 248 LEU n
1 249 SER n
1 250 ARG n
1 251 TRP n
1 252 LEU n
1 253 ASN n
1 254 LYS n
1 255 ASN n
1 256 SER n
1 257 GLN n
1 258 LYS n
1 259 GLU n
1 260 GLN n
1 261 GLY n
1 262 SER n
1 263 ALA n
1 264 LYS n
1 265 CYS n
1 266 SER n
1 267 GLY n
1 268 SER n
1 269 GLY n
1 270 LYS n
1 271 PRO n
1 272 VAL n
1 273 ARG n
1 274 SER n
1 275 ILE n
1 276 ILE n
1 277 CYS n
1 278 PRO n
1 279 THR n
#
loop_
_entity_src_gen.entity_id
_entity_src_gen.pdbx_src_id
_entity_src_gen.pdbx_alt_source_flag
_entity_src_gen.pdbx_seq_type
_entity_src_gen.pdbx_beg_seq_num
_entity_src_gen.pdbx_end_seq_num
_entity_src_gen.gene_src_common_name
_entity_src_gen.gene_src_genus
_entity_src_gen.pdbx_gene_src_gene
_entity_src_gen.gene_src_species
_entity_src_gen.gene_src_strain
_entity_src_gen.gene_src_tissue
_entity_src_gen.gene_src_tissue_fraction
_entity_src_gen.gene_src_details
_entity_src_gen.pdbx_gene_src_fragment
_entity_src_gen.pdbx_gene_src_scientific_name
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id
_entity_src_gen.pdbx_gene_src_variant
_entity_src_gen.pdbx_gene_src_cell_line
_entity_src_gen.pdbx_gene_src_atcc
_entity_src_gen.pdbx_gene_src_organ
_entity_src_gen.pdbx_gene_src_organelle
_entity_src_gen.pdbx_gene_src_cell
_entity_src_gen.pdbx_gene_src_cellular_location
_entity_src_gen.host_org_common_name
_entity_src_gen.pdbx_host_org_scientific_name
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id
_entity_src_gen.host_org_genus
_entity_src_gen.pdbx_host_org_gene
_entity_src_gen.pdbx_host_org_organ
_entity_src_gen.host_org_species
_entity_src_gen.pdbx_host_org_tissue
_entity_src_gen.pdbx_host_org_tissue_fraction
_entity_src_gen.pdbx_host_org_strain
_entity_src_gen.pdbx_host_org_variant
_entity_src_gen.pdbx_host_org_cell_line
_entity_src_gen.pdbx_host_org_atcc
_entity_src_gen.pdbx_host_org_culture_collection
_entity_src_gen.pdbx_host_org_cell
_entity_src_gen.pdbx_host_org_organelle
_entity_src_gen.pdbx_host_org_cellular_location
_entity_src_gen.pdbx_host_org_vector_type
_entity_src_gen.pdbx_host_org_vector
_entity_src_gen.host_org_details
_entity_src_gen.expression_system_id
_entity_src_gen.plasmid_name
_entity_src_gen.plasmid_details
_entity_src_gen.pdbx_description
1 1 sample ? 3 204 'human, Inshore hagfish' ? 'TLR4, VLRB' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'Fall armyworm'
'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? Baculovirus ? ? ? ? ? ?
1 2 sample ? 205 278 'human, Inshore hagfish' ? 'TLR4, VLRB' ? ? ? ? ? ? 'Eptatretus burgeri' 7764 ? ? ? ? ? ? ? 'Fall armyworm'
'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? Baculovirus ? ? ? ? ? ?
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0
3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ?
2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6'
180.156
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
FUL 'L-saccharide, beta linking' . beta-L-fucopyranose
'beta-L-fucose; 6-deoxy-beta-L-galactopyranose; L-fucose; fucose; 6-DEOXY-BETA-L-GALACTOSE' 'C6 H12 O5' 164.156
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb
BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose
BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp
BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man
FUL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpb
FUL 'COMMON NAME' GMML 1.0 b-L-fucopyranose
FUL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-L-Fucp
FUL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 25 ? ? ? A . n
A 1 2 SER 2 26 ? ? ? A . n
A 1 3 GLU 3 27 27 GLU GLU A . n
A 1 4 PRO 4 28 28 PRO PRO A . n
A 1 5 CYS 5 29 29 CYS CYS A . n
A 1 6 VAL 6 30 30 VAL VAL A . n
A 1 7 GLU 7 31 31 GLU GLU A . n
A 1 8 VAL 8 32 32 VAL VAL A . n
A 1 9 VAL 9 33 33 VAL VAL A . n
A 1 10 PRO 10 34 34 PRO PRO A . n
A 1 11 ASN 11 35 35 ASN ASN A . n
A 1 12 ILE 12 36 36 ILE ILE A . n
A 1 13 THR 13 37 37 THR THR A . n
A 1 14 TYR 14 38 38 TYR TYR A . n
A 1 15 GLN 15 39 39 GLN GLN A . n
A 1 16 CYS 16 40 40 CYS CYS A . n
A 1 17 MET 17 41 41 MET MET A . n
A 1 18 GLU 18 42 42 GLU GLU A . n
A 1 19 LEU 19 43 43 LEU LEU A . n
A 1 20 ASN 20 44 44 ASN ASN A . n
A 1 21 PHE 21 45 45 PHE PHE A . n
A 1 22 TYR 22 46 46 TYR TYR A . n
A 1 23 LYS 23 47 47 LYS LYS A . n
A 1 24 ILE 24 48 48 ILE ILE A . n
A 1 25 PRO 25 49 49 PRO PRO A . n
A 1 26 ASP 26 50 50 ASP ASP A . n
A 1 27 ASN 27 51 51 ASN ASN A . n
A 1 28 LEU 28 52 52 LEU LEU A . n
A 1 29 PRO 29 53 53 PRO PRO A . n
A 1 30 PHE 30 54 54 PHE PHE A . n
A 1 31 SER 31 55 55 SER SER A . n
A 1 32 THR 32 56 56 THR THR A . n
A 1 33 LYS 33 57 57 LYS LYS A . n
A 1 34 ASN 34 58 58 ASN ASN A . n
A 1 35 LEU 35 59 59 LEU LEU A . n
A 1 36 ASP 36 60 60 ASP ASP A . n
A 1 37 LEU 37 61 61 LEU LEU A . n
A 1 38 SER 38 62 62 SER SER A . n
A 1 39 PHE 39 63 63 PHE PHE A . n
A 1 40 ASN 40 64 64 ASN ASN A . n
A 1 41 PRO 41 65 65 PRO PRO A . n
A 1 42 LEU 42 66 66 LEU LEU A . n
A 1 43 ARG 43 67 67 ARG ARG A . n
A 1 44 HIS 44 68 68 HIS HIS A . n
A 1 45 LEU 45 69 69 LEU LEU A . n
A 1 46 GLY 46 70 70 GLY GLY A . n
A 1 47 SER 47 71 71 SER SER A . n
A 1 48 TYR 48 72 72 TYR TYR A . n
A 1 49 SER 49 73 73 SER SER A . n
A 1 50 PHE 50 74 74 PHE PHE A . n
A 1 51 PHE 51 75 75 PHE PHE A . n
A 1 52 SER 52 76 76 SER SER A . n
A 1 53 PHE 53 77 77 PHE PHE A . n
A 1 54 PRO 54 78 78 PRO PRO A . n
A 1 55 GLU 55 79 79 GLU GLU A . n
A 1 56 LEU 56 80 80 LEU LEU A . n
A 1 57 GLN 57 81 81 GLN GLN A . n
A 1 58 VAL 58 82 82 VAL VAL A . n
A 1 59 LEU 59 83 83 LEU LEU A . n
A 1 60 ASP 60 84 84 ASP ASP A . n
A 1 61 LEU 61 85 85 LEU LEU A . n
A 1 62 SER 62 86 86 SER SER A . n
A 1 63 ARG 63 87 87 ARG ARG A . n
A 1 64 CYS 64 88 88 CYS CYS A . n
A 1 65 GLU 65 89 89 GLU GLU A . n
A 1 66 ILE 66 90 90 ILE ILE A . n
A 1 67 GLN 67 91 91 GLN GLN A . n
A 1 68 THR 68 92 92 THR THR A . n
A 1 69 ILE 69 93 93 ILE ILE A . n
A 1 70 GLU 70 94 94 GLU GLU A . n
A 1 71 ASP 71 95 95 ASP ASP A . n
A 1 72 GLY 72 96 96 GLY GLY A . n
A 1 73 ALA 73 97 97 ALA ALA A . n
A 1 74 TYR 74 98 98 TYR TYR A . n
A 1 75 GLN 75 99 99 GLN GLN A . n
A 1 76 SER 76 100 100 SER SER A . n
A 1 77 LEU 77 101 101 LEU LEU A . n
A 1 78 SER 78 102 102 SER SER A . n
A 1 79 HIS 79 103 103 HIS HIS A . n
A 1 80 LEU 80 104 104 LEU LEU A . n
A 1 81 SER 81 105 105 SER SER A . n
A 1 82 THR 82 106 106 THR THR A . n
A 1 83 LEU 83 107 107 LEU LEU A . n
A 1 84 ILE 84 108 108 ILE ILE A . n
A 1 85 LEU 85 109 109 LEU LEU A . n
A 1 86 THR 86 110 110 THR THR A . n
A 1 87 GLY 87 111 111 GLY GLY A . n
A 1 88 ASN 88 112 112 ASN ASN A . n
A 1 89 PRO 89 113 113 PRO PRO A . n
A 1 90 ILE 90 114 114 ILE ILE A . n
A 1 91 GLN 91 115 115 GLN GLN A . n
A 1 92 SER 92 116 116 SER SER A . n
A 1 93 LEU 93 117 117 LEU LEU A . n
A 1 94 ALA 94 118 118 ALA ALA A . n
A 1 95 LEU 95 119 119 LEU LEU A . n
A 1 96 GLY 96 120 120 GLY GLY A . n
A 1 97 ALA 97 121 121 ALA ALA A . n
A 1 98 PHE 98 122 122 PHE PHE A . n
A 1 99 SER 99 123 123 SER SER A . n
A 1 100 GLY 100 124 124 GLY GLY A . n
A 1 101 LEU 101 125 125 LEU LEU A . n
A 1 102 SER 102 126 126 SER SER A . n
A 1 103 SER 103 127 127 SER SER A . n
A 1 104 LEU 104 128 128 LEU LEU A . n
A 1 105 GLN 105 129 129 GLN GLN A . n
A 1 106 LYS 106 130 130 LYS LYS A . n
A 1 107 LEU 107 131 131 LEU LEU A . n
A 1 108 VAL 108 132 132 VAL VAL A . n
A 1 109 ALA 109 133 133 ALA ALA A . n
A 1 110 LEU 110 134 134 LEU LEU A . n
A 1 111 GLU 111 135 135 GLU GLU A . n
A 1 112 THR 112 136 136 THR THR A . n
A 1 113 ASN 113 137 137 ASN ASN A . n
A 1 114 LEU 114 138 138 LEU LEU A . n
A 1 115 ALA 115 139 139 ALA ALA A . n
A 1 116 SER 116 140 140 SER SER A . n
A 1 117 LEU 117 141 141 LEU LEU A . n
A 1 118 GLU 118 142 142 GLU GLU A . n
A 1 119 ASN 119 143 143 ASN ASN A . n
A 1 120 PHE 120 144 144 PHE PHE A . n
A 1 121 PRO 121 145 145 PRO PRO A . n
A 1 122 ILE 122 146 146 ILE ILE A . n
A 1 123 GLY 123 147 147 GLY GLY A . n
A 1 124 HIS 124 148 148 HIS HIS A . n
A 1 125 LEU 125 149 149 LEU LEU A . n
A 1 126 LYS 126 150 150 LYS LYS A . n
A 1 127 THR 127 151 151 THR THR A . n
A 1 128 LEU 128 152 152 LEU LEU A . n
A 1 129 LYS 129 153 153 LYS LYS A . n
A 1 130 GLU 130 154 154 GLU GLU A . n
A 1 131 LEU 131 155 155 LEU LEU A . n
A 1 132 ASN 132 156 156 ASN ASN A . n
A 1 133 VAL 133 157 157 VAL VAL A . n
A 1 134 ALA 134 158 158 ALA ALA A . n
A 1 135 HIS 135 159 159 HIS HIS A . n
A 1 136 ASN 136 160 160 ASN ASN A . n
A 1 137 LEU 137 161 161 LEU LEU A . n
A 1 138 ILE 138 162 162 ILE ILE A . n
A 1 139 GLN 139 163 163 GLN GLN A . n
A 1 140 SER 140 164 164 SER SER A . n
A 1 141 PHE 141 165 165 PHE PHE A . n
A 1 142 LYS 142 166 166 LYS LYS A . n
A 1 143 LEU 143 167 167 LEU LEU A . n
A 1 144 PRO 144 168 168 PRO PRO A . n
A 1 145 GLU 145 169 169 GLU GLU A . n
A 1 146 TYR 146 170 170 TYR TYR A . n
A 1 147 PHE 147 171 171 PHE PHE A . n
A 1 148 SER 148 172 172 SER SER A . n
A 1 149 ASN 149 173 173 ASN ASN A . n
A 1 150 LEU 150 174 174 LEU LEU A . n
A 1 151 THR 151 175 175 THR THR A . n
A 1 152 ASN 152 176 176 ASN ASN A . n
A 1 153 LEU 153 177 177 LEU LEU A . n
A 1 154 GLU 154 178 178 GLU GLU A . n
A 1 155 HIS 155 179 179 HIS HIS A . n
A 1 156 LEU 156 180 180 LEU LEU A . n
A 1 157 ASP 157 181 181 ASP ASP A . n
A 1 158 LEU 158 182 182 LEU LEU A . n
A 1 159 SER 159 183 183 SER SER A . n
A 1 160 SER 160 184 184 SER SER A . n
A 1 161 ASN 161 185 185 ASN ASN A . n
A 1 162 LYS 162 186 186 LYS LYS A . n
A 1 163 ILE 163 187 187 ILE ILE A . n
A 1 164 GLN 164 188 188 GLN GLN A . n
A 1 165 SER 165 189 189 SER SER A . n
A 1 166 ILE 166 190 190 ILE ILE A . n
A 1 167 TYR 167 191 191 TYR TYR A . n
A 1 168 CYS 168 192 192 CYS CYS A . n
A 1 169 THR 169 193 193 THR THR A . n
A 1 170 ASP 170 194 194 ASP ASP A . n
A 1 171 LEU 171 195 195 LEU LEU A . n
A 1 172 ARG 172 196 196 ARG ARG A . n
A 1 173 VAL 173 197 197 VAL VAL A . n
A 1 174 LEU 174 198 198 LEU LEU A . n
A 1 175 HIS 175 199 199 HIS HIS A . n
A 1 176 GLN 176 200 200 GLN GLN A . n
A 1 177 MET 177 201 201 MET MET A . n
A 1 178 PRO 178 202 202 PRO PRO A . n
A 1 179 LEU 179 203 203 LEU LEU A . n
A 1 180 LEU 180 204 204 LEU LEU A . n
A 1 181 ASN 181 205 205 ASN ASN A . n
A 1 182 LEU 182 206 206 LEU LEU A . n
A 1 183 SER 183 207 207 SER SER A . n
A 1 184 LEU 184 208 208 LEU LEU A . n
A 1 185 ASP 185 209 209 ASP ASP A . n
A 1 186 LEU 186 210 210 LEU LEU A . n
A 1 187 SER 187 211 211 SER SER A . n
A 1 188 LEU 188 212 212 LEU LEU A . n
A 1 189 ASN 189 213 213 ASN ASN A . n
A 1 190 PRO 190 214 214 PRO PRO A . n
A 1 191 MET 191 215 215 MET MET A . n
A 1 192 ASN 192 216 216 ASN ASN A . n
A 1 193 PHE 193 217 217 PHE PHE A . n
A 1 194 ILE 194 218 218 ILE ILE A . n
A 1 195 GLN 195 219 219 GLN GLN A . n
A 1 196 PRO 196 220 220 PRO PRO A . n
A 1 197 GLY 197 221 221 GLY GLY A . n
A 1 198 ALA 198 222 222 ALA ALA A . n
A 1 199 PHE 199 223 223 PHE PHE A . n
A 1 200 LYS 200 224 224 LYS LYS A . n
A 1 201 GLU 201 225 225 GLU GLU A . n
A 1 202 ILE 202 226 226 ILE ILE A . n
A 1 203 ARG 203 227 227 ARG ARG A . n
A 1 204 LEU 204 228 228 LEU LEU A . n
A 1 205 LYS 205 229 229 LYS LYS A . n
A 1 206 GLU 206 230 230 GLU GLU A . n
A 1 207 LEU 207 231 231 LEU LEU A . n
A 1 208 ALA 208 232 232 ALA ALA A . n
A 1 209 LEU 209 233 233 LEU LEU A . n
A 1 210 ASP 210 234 234 ASP ASP A . n
A 1 211 THR 211 235 235 THR THR A . n
A 1 212 ASN 212 236 236 ASN ASN A . n
A 1 213 GLN 213 237 237 GLN GLN A . n
A 1 214 LEU 214 238 238 LEU LEU A . n
A 1 215 LYS 215 239 239 LYS LYS A . n
A 1 216 SER 216 240 240 SER SER A . n
A 1 217 VAL 217 241 241 VAL VAL A . n
A 1 218 PRO 218 242 242 PRO PRO A . n
A 1 219 ASP 219 243 243 ASP ASP A . n
A 1 220 GLY 220 244 244 GLY GLY A . n
A 1 221 ILE 221 245 245 ILE ILE A . n
A 1 222 PHE 222 246 246 PHE PHE A . n
A 1 223 ASP 223 247 247 ASP ASP A . n
A 1 224 ARG 224 248 248 ARG ARG A . n
A 1 225 LEU 225 249 249 LEU LEU A . n
A 1 226 THR 226 250 250 THR THR A . n
A 1 227 SER 227 251 251 SER SER A . n
A 1 228 LEU 228 252 252 LEU LEU A . n
A 1 229 GLN 229 253 253 GLN GLN A . n
A 1 230 LYS 230 254 254 LYS LYS A . n
A 1 231 ILE 231 255 255 ILE ILE A . n
A 1 232 TRP 232 256 256 TRP TRP A . n
A 1 233 LEU 233 257 257 LEU LEU A . n
A 1 234 HIS 234 258 258 HIS HIS A . n
A 1 235 THR 235 259 259 THR THR A . n
A 1 236 ASN 236 260 260 ASN ASN A . n
A 1 237 PRO 237 261 261 PRO PRO A . n
A 1 238 TRP 238 262 262 TRP TRP A . n
A 1 239 ASP 239 263 263 ASP ASP A . n
A 1 240 CYS 240 264 264 CYS CYS A . n
A 1 241 SER 241 265 265 SER SER A . n
A 1 242 CYS 242 266 266 CYS CYS A . n
A 1 243 PRO 243 267 267 PRO PRO A . n
A 1 244 ARG 244 268 268 ARG ARG A . n
A 1 245 ILE 245 269 269 ILE ILE A . n
A 1 246 ASP 246 270 270 ASP ASP A . n
A 1 247 TYR 247 271 271 TYR TYR A . n
A 1 248 LEU 248 272 272 LEU LEU A . n
A 1 249 SER 249 273 273 SER SER A . n
A 1 250 ARG 250 274 274 ARG ARG A . n
A 1 251 TRP 251 275 275 TRP TRP A . n
A 1 252 LEU 252 276 276 LEU LEU A . n
A 1 253 ASN 253 277 277 ASN ASN A . n
A 1 254 LYS 254 278 278 LYS LYS A . n
A 1 255 ASN 255 279 279 ASN ASN A . n
A 1 256 SER 256 280 280 SER SER A . n
A 1 257 GLN 257 281 281 GLN GLN A . n
A 1 258 LYS 258 282 282 LYS LYS A . n
A 1 259 GLU 259 283 283 GLU GLU A . n
A 1 260 GLN 260 284 284 GLN GLN A . n
A 1 261 GLY 261 285 285 GLY GLY A . n
A 1 262 SER 262 286 286 SER SER A . n
A 1 263 ALA 263 287 287 ALA ALA A . n
A 1 264 LYS 264 288 288 LYS LYS A . n
A 1 265 CYS 265 289 289 CYS CYS A . n
A 1 266 SER 266 290 290 SER SER A . n
A 1 267 GLY 267 291 291 GLY GLY A . n
A 1 268 SER 268 292 292 SER SER A . n
A 1 269 GLY 269 293 293 GLY GLY A . n
A 1 270 LYS 270 294 294 LYS LYS A . n
A 1 271 PRO 271 295 295 PRO PRO A . n
A 1 272 VAL 272 296 296 VAL VAL A . n
A 1 273 ARG 273 297 297 ARG ARG A . n
A 1 274 SER 274 298 298 SER SER A . n
A 1 275 ILE 275 299 299 ILE ILE A . n
A 1 276 ILE 276 300 300 ILE ILE A . n
A 1 277 CYS 277 301 301 CYS CYS A . n
A 1 278 PRO 278 302 302 PRO PRO A . n
A 1 279 THR 279 303 303 THR THR A . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 NAG 1 B NAG 1 A NAG 701 n
B 2 NAG 2 B NAG 2 A NAG 703 n
B 2 BMA 3 B BMA 3 A BMA 704 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG 1 801 801 NAG NAG A .
D 4 FUL 1 805 702 FUL FUL A .
E 5 SO4 1 806 901 SO4 SO4 A .
F 6 HOH 1 901 904 HOH HOH A .
F 6 HOH 2 902 905 HOH HOH A .
F 6 HOH 3 903 906 HOH HOH A .
F 6 HOH 4 904 907 HOH HOH A .
F 6 HOH 5 905 908 HOH HOH A .
F 6 HOH 6 906 909 HOH HOH A .
F 6 HOH 7 907 911 HOH HOH A .
F 6 HOH 8 908 912 HOH HOH A .
F 6 HOH 9 909 913 HOH HOH A .
F 6 HOH 10 910 914 HOH HOH A .
F 6 HOH 11 911 915 HOH HOH A .
F 6 HOH 12 912 916 HOH HOH A .
F 6 HOH 13 913 918 HOH HOH A .
F 6 HOH 14 914 919 HOH HOH A .
F 6 HOH 15 915 920 HOH HOH A .
F 6 HOH 16 916 921 HOH HOH A .
F 6 HOH 17 917 922 HOH HOH A .
F 6 HOH 18 918 923 HOH HOH A .
F 6 HOH 19 919 924 HOH HOH A .
F 6 HOH 20 920 925 HOH HOH A .
F 6 HOH 21 921 926 HOH HOH A .
F 6 HOH 22 922 927 HOH HOH A .
F 6 HOH 23 923 928 HOH HOH A .
F 6 HOH 24 924 929 HOH HOH A .
F 6 HOH 25 925 930 HOH HOH A .
F 6 HOH 26 926 931 HOH HOH A .
F 6 HOH 27 927 932 HOH HOH A .
F 6 HOH 28 928 933 HOH HOH A .
F 6 HOH 29 929 934 HOH HOH A .
F 6 HOH 30 930 935 HOH HOH A .
F 6 HOH 31 931 936 HOH HOH A .
F 6 HOH 32 932 937 HOH HOH A .
#
_pdbx_unobs_or_zero_occ_atoms.id 1
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1
_pdbx_unobs_or_zero_occ_atoms.polymer_flag N
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id A
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id FUL
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id 805
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ?
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id O1
_pdbx_unobs_or_zero_occ_atoms.label_alt_id ?
_pdbx_unobs_or_zero_occ_atoms.label_asym_id D
_pdbx_unobs_or_zero_occ_atoms.label_comp_id FUL
_pdbx_unobs_or_zero_occ_atoms.label_seq_id 1
_pdbx_unobs_or_zero_occ_atoms.label_atom_id O1
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
ADSC 'data collection' Quantum ? 1
MOLREP phasing . ? 2
CNS refinement . ? 3
MOSFLM 'data reduction' . ? 4
SCALA 'data scaling' . ? 5
#
_cell.entry_id 3UL8
_cell.length_a 32.040
_cell.length_b 50.500
_cell.length_c 192.780
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3UL8
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 3UL8
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.49
_exptl_crystal.density_percent_sol 50.70
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.temp 296
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 5.5
_exptl_crystal_grow.pdbx_details '0.1M Bis-Tris(pH5.5), 36% PEG 1000, 0.2M Lithium sulfate, VAPOR DIFFUSION, temperature 296K'
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.pdbx_collection_date 2010-04-23
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'double crystal'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'PAL/PLS BEAMLINE 4A'
_diffrn_source.pdbx_synchrotron_site PAL/PLS
_diffrn_source.pdbx_synchrotron_beamline 4A
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1
#
_reflns.entry_id 3UL8
_reflns.observed_criterion_sigma_I 1
_reflns.observed_criterion_sigma_F 1
_reflns.d_resolution_low 50
_reflns.d_resolution_high 2.45
_reflns.number_obs 11557
_reflns.number_all ?
_reflns.percent_possible_obs 94.3
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 2.50
_reflns_shell.d_res_low 2.59
_reflns_shell.percent_possible_all ?
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.number_possible ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 3UL8
_refine.ls_number_reflns_obs 10887
_refine.ls_number_reflns_all 10887
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 50
_refine.ls_d_res_high 2.5
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.2401
_refine.ls_R_factor_R_free 0.2996
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free 568
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model 2Z62
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'maximum likelihood'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.pdbx_overall_ESU_R ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 2196
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 68
_refine_hist.number_atoms_solvent 32
_refine_hist.number_atoms_total 2296
_refine_hist.d_res_high 2.5
_refine_hist.d_res_low 50
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used ?
_refine_ls_shell.d_res_high 2.50
_refine_ls_shell.d_res_low 2.59
_refine_ls_shell.number_reflns_R_work ?
_refine_ls_shell.R_factor_R_work ?
_refine_ls_shell.percent_reflns_obs ?
_refine_ls_shell.R_factor_R_free ?
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
#
_database_PDB_matrix.entry_id 3UL8
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 3UL8
_struct.title 'Crystal structure of the TV3 mutant V134L'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3UL8
_struct_keywords.pdbx_keywords 'IMMUNE SYSTEM'
_struct_keywords.text 'LRR, protein binding, MD-2, extracellular matrix, IMMUNE SYSTEM'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 5 ?
F N N 6 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_db_isoform
1 UNP TLR4_HUMAN O00206 1
;EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST
LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK
IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL
;
27 ?
2 UNP Q4G1L2_EPTBU Q4G1L2 1 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICP 126 ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 3UL8 A 3 ? 204 ? O00206 27 ? 228 ? 27 228
2 2 3UL8 A 205 ? 278 ? Q4G1L2 126 ? 199 ? 229 302
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 3UL8 LEU A 110 ? UNP O00206 VAL 134 'engineered mutation' 134 1
2 3UL8 THR A 279 ? UNP Q4G1L2 ? ? 'expression tag' 303 2
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 SER A 116 ? PHE A 120 ? SER A 140 PHE A 144 5 ? 5
HELX_P HELX_P2 2 PRO A 144 ? LEU A 150 ? PRO A 168 LEU A 174 5 ? 7
HELX_P HELX_P3 3 LEU A 171 ? HIS A 175 ? LEU A 195 HIS A 199 5 ? 5
HELX_P HELX_P4 4 ILE A 245 ? ASN A 255 ? ILE A 269 ASN A 279 1 ? 11
HELX_P HELX_P5 5 PRO A 271 ? ILE A 275 ? PRO A 295 ILE A 299 5 ? 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 16 SG ? ? A CYS 29 A CYS 40 1_555 ? ? ? ? ? ? ? 2.035 ? ?
disulf2 disulf ? ? A CYS 240 SG ? ? ? 1_555 A CYS 265 SG ? ? A CYS 264 A CYS 289 1_555 ? ? ? ? ? ? ? 2.022 ? ?
disulf3 disulf ? ? A CYS 242 SG ? ? ? 1_555 A CYS 277 SG ? ? A CYS 266 A CYS 301 1_555 ? ? ? ? ? ? ? 2.040 ? ?
covale1 covale one ? A ASN 11 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 35 B NAG 1 1_555 ? ? ? ? ? ? ? 1.452 ? N-Glycosylation
covale2 covale one ? A ASN 149 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 173 A NAG 801 1_555 ? ? ? ? ? ? ? 1.457 ? N-Glycosylation
covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.389 ? ?
covale4 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.399 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 NAG B . ? ASN A 11 ? NAG B 1 ? 1_555 ASN A 35 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
2 NAG C . ? ASN A 149 ? NAG A 801 ? 1_555 ASN A 173 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
3 CYS A 5 ? CYS A 16 ? CYS A 29 ? 1_555 CYS A 40 ? 1_555 SG SG . . . None 'Disulfide bridge'
4 CYS A 240 ? CYS A 265 ? CYS A 264 ? 1_555 CYS A 289 ? 1_555 SG SG . . . None 'Disulfide bridge'
5 CYS A 242 ? CYS A 277 ? CYS A 266 ? 1_555 CYS A 301 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
_struct_mon_prot_cis.pdbx_id 1
_struct_mon_prot_cis.label_comp_id CYS
_struct_mon_prot_cis.label_seq_id 242
_struct_mon_prot_cis.label_asym_id A
_struct_mon_prot_cis.label_alt_id .
_struct_mon_prot_cis.pdbx_PDB_ins_code ?
_struct_mon_prot_cis.auth_comp_id CYS
_struct_mon_prot_cis.auth_seq_id 266
_struct_mon_prot_cis.auth_asym_id A
_struct_mon_prot_cis.pdbx_label_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_label_seq_id_2 243
_struct_mon_prot_cis.pdbx_label_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_ins_code_2 ?
_struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_auth_seq_id_2 267
_struct_mon_prot_cis.pdbx_auth_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_model_num 1
_struct_mon_prot_cis.pdbx_omega_angle 0.53
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 12 ?
B ? 2 ?
C ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? parallel
A 3 4 ? parallel
A 4 5 ? parallel
A 5 6 ? parallel
A 6 7 ? parallel
A 7 8 ? parallel
A 8 9 ? parallel
A 9 10 ? parallel
A 10 11 ? parallel
A 11 12 ? parallel
B 1 2 ? parallel
C 1 2 ? parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 VAL A 6 ? VAL A 9 ? VAL A 30 VAL A 33
A 2 THR A 13 ? GLN A 15 ? THR A 37 GLN A 39
A 3 ASN A 34 ? ASP A 36 ? ASN A 58 ASP A 60
A 4 VAL A 58 ? ASP A 60 ? VAL A 82 ASP A 84
A 5 THR A 82 ? ILE A 84 ? THR A 106 ILE A 108
A 6 LYS A 106 ? VAL A 108 ? LYS A 130 VAL A 132
A 7 GLU A 130 ? ASN A 132 ? GLU A 154 ASN A 156
A 8 HIS A 155 ? ASP A 157 ? HIS A 179 ASP A 181
A 9 LEU A 182 ? ASP A 185 ? LEU A 206 ASP A 209
A 10 LEU A 204 ? ALA A 208 ? LEU A 228 ALA A 232
A 11 LYS A 230 ? TRP A 232 ? LYS A 254 TRP A 256
A 12 GLU A 259 ? GLN A 260 ? GLU A 283 GLN A 284
B 1 HIS A 44 ? LEU A 45 ? HIS A 68 LEU A 69
B 2 THR A 68 ? ILE A 69 ? THR A 92 ILE A 93
C 1 SER A 165 ? ILE A 166 ? SER A 189 ILE A 190
C 2 PHE A 193 ? ILE A 194 ? PHE A 217 ILE A 218
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N VAL A 6 ? N VAL A 30 O GLN A 15 ? O GLN A 39
A 2 3 N TYR A 14 ? N TYR A 38 O ASN A 34 ? O ASN A 58
A 3 4 N LEU A 35 ? N LEU A 59 O VAL A 58 ? O VAL A 82
A 4 5 N LEU A 59 ? N LEU A 83 O THR A 82 ? O THR A 106
A 5 6 N LEU A 83 ? N LEU A 107 O LYS A 106 ? O LYS A 130
A 6 7 N LEU A 107 ? N LEU A 131 O GLU A 130 ? O GLU A 154
A 7 8 N LEU A 131 ? N LEU A 155 O ASP A 157 ? O ASP A 181
A 8 9 N LEU A 156 ? N LEU A 180 O SER A 183 ? O SER A 207
A 9 10 N LEU A 184 ? N LEU A 208 O GLU A 206 ? O GLU A 230
A 10 11 N LEU A 207 ? N LEU A 231 O LYS A 230 ? O LYS A 254
A 11 12 N ILE A 231 ? N ILE A 255 O GLN A 260 ? O GLN A 284
B 1 2 N LEU A 45 ? N LEU A 69 O THR A 68 ? O THR A 92
C 1 2 N ILE A 166 ? N ILE A 190 O PHE A 193 ? O PHE A 217
#
_pdbx_entry_details.sequence_details
'THE FUSION PROTEIN OF TLR4 (UNP RESIDUES 27-228) AND VLRB.61 (UNP RESIDUES 126-199)'
_pdbx_entry_details.entry_id 3UL8
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 O
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 GLU
_pdbx_validate_close_contact.auth_seq_id_1 27
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 N
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 CYS
_pdbx_validate_close_contact.auth_seq_id_2 29
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.19
#
_pdbx_validate_rmsd_angle.id 1
_pdbx_validate_rmsd_angle.PDB_model_num 1
_pdbx_validate_rmsd_angle.auth_atom_id_1 C
_pdbx_validate_rmsd_angle.auth_asym_id_1 A
_pdbx_validate_rmsd_angle.auth_comp_id_1 GLU
_pdbx_validate_rmsd_angle.auth_seq_id_1 27
_pdbx_validate_rmsd_angle.PDB_ins_code_1 ?
_pdbx_validate_rmsd_angle.label_alt_id_1 ?
_pdbx_validate_rmsd_angle.auth_atom_id_2 N
_pdbx_validate_rmsd_angle.auth_asym_id_2 A
_pdbx_validate_rmsd_angle.auth_comp_id_2 PRO
_pdbx_validate_rmsd_angle.auth_seq_id_2 28
_pdbx_validate_rmsd_angle.PDB_ins_code_2 ?
_pdbx_validate_rmsd_angle.label_alt_id_2 ?
_pdbx_validate_rmsd_angle.auth_atom_id_3 CD
_pdbx_validate_rmsd_angle.auth_asym_id_3 A
_pdbx_validate_rmsd_angle.auth_comp_id_3 PRO
_pdbx_validate_rmsd_angle.auth_seq_id_3 28
_pdbx_validate_rmsd_angle.PDB_ins_code_3 ?
_pdbx_validate_rmsd_angle.label_alt_id_3 ?
_pdbx_validate_rmsd_angle.angle_value 115.33
_pdbx_validate_rmsd_angle.angle_target_value 128.40
_pdbx_validate_rmsd_angle.angle_deviation -13.07
_pdbx_validate_rmsd_angle.angle_standard_deviation 2.10
_pdbx_validate_rmsd_angle.linker_flag Y
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 PRO A 28 ? ? 23.10 -40.56
2 1 PRO A 34 ? ? -38.00 123.89
3 1 ASN A 35 ? ? 55.15 19.42
4 1 ILE A 36 ? ? -131.60 -64.52
5 1 ASN A 51 ? ? -94.83 48.61
6 1 PRO A 65 ? ? -68.68 77.71
7 1 ARG A 67 ? ? 59.68 -58.48
8 1 PHE A 77 ? ? -146.97 46.31
9 1 PRO A 78 ? ? -66.52 5.77
10 1 GLU A 89 ? ? 58.98 17.38
11 1 SER A 100 ? ? -67.15 -72.94
12 1 LEU A 101 ? ? -24.26 78.96
13 1 PRO A 113 ? ? -68.73 53.70
14 1 SER A 116 ? ? -176.09 123.18
15 1 PRO A 145 ? ? -67.50 61.07
16 1 LEU A 177 ? ? -51.81 106.39
17 1 ASN A 185 ? ? -116.03 -144.10
18 1 PRO A 214 ? ? -76.89 41.74
19 1 ASN A 236 ? ? -113.38 -142.06
20 1 ASP A 247 ? ? -56.80 -74.42
21 1 CYS A 264 ? ? -92.29 31.80
22 1 SER A 298 ? ? -97.19 32.52
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A ASN 149 A ASN 173 ? ASN 'GLYCOSYLATION SITE'
2 A ASN 11 A ASN 35 ? ASN 'GLYCOSYLATION SITE'
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A GLY 25 ? A GLY 1
2 1 Y 1 A SER 26 ? A SER 2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
BMA C1 C N R 74
BMA C2 C N S 75
BMA C3 C N S 76
BMA C4 C N S 77
BMA C5 C N R 78
BMA C6 C N N 79
BMA O1 O N N 80
BMA O2 O N N 81
BMA O3 O N N 82
BMA O4 O N N 83
BMA O5 O N N 84
BMA O6 O N N 85
BMA H1 H N N 86
BMA H2 H N N 87
BMA H3 H N N 88
BMA H4 H N N 89
BMA H5 H N N 90
BMA H61 H N N 91
BMA H62 H N N 92
BMA HO1 H N N 93
BMA HO2 H N N 94
BMA HO3 H N N 95
BMA HO4 H N N 96
BMA HO6 H N N 97
CYS N N N N 98
CYS CA C N R 99
CYS C C N N 100
CYS O O N N 101
CYS CB C N N 102
CYS SG S N N 103
CYS OXT O N N 104
CYS H H N N 105
CYS H2 H N N 106
CYS HA H N N 107
CYS HB2 H N N 108
CYS HB3 H N N 109
CYS HG H N N 110
CYS HXT H N N 111
FUL C1 C N S 112
FUL C2 C N S 113
FUL O2 O N N 114
FUL C3 C N R 115
FUL O3 O N N 116
FUL C4 C N S 117
FUL O4 O N N 118
FUL C5 C N S 119
FUL C6 C N N 120
FUL O5 O N N 121
FUL O1 O N N 122
FUL H1 H N N 123
FUL H2 H N N 124
FUL HO2 H N N 125
FUL H3 H N N 126
FUL HO3 H N N 127
FUL H4 H N N 128
FUL HO4 H N N 129
FUL H5 H N N 130
FUL H61 H N N 131
FUL H62 H N N 132
FUL H63 H N N 133
FUL HO1 H N N 134
GLN N N N N 135
GLN CA C N S 136
GLN C C N N 137
GLN O O N N 138
GLN CB C N N 139
GLN CG C N N 140
GLN CD C N N 141
GLN OE1 O N N 142
GLN NE2 N N N 143
GLN OXT O N N 144
GLN H H N N 145
GLN H2 H N N 146
GLN HA H N N 147
GLN HB2 H N N 148
GLN HB3 H N N 149
GLN HG2 H N N 150
GLN HG3 H N N 151
GLN HE21 H N N 152
GLN HE22 H N N 153
GLN HXT H N N 154
GLU N N N N 155
GLU CA C N S 156
GLU C C N N 157
GLU O O N N 158
GLU CB C N N 159
GLU CG C N N 160
GLU CD C N N 161
GLU OE1 O N N 162
GLU OE2 O N N 163
GLU OXT O N N 164
GLU H H N N 165
GLU H2 H N N 166
GLU HA H N N 167
GLU HB2 H N N 168
GLU HB3 H N N 169
GLU HG2 H N N 170
GLU HG3 H N N 171
GLU HE2 H N N 172
GLU HXT H N N 173
GLY N N N N 174
GLY CA C N N 175
GLY C C N N 176
GLY O O N N 177
GLY OXT O N N 178
GLY H H N N 179
GLY H2 H N N 180
GLY HA2 H N N 181
GLY HA3 H N N 182
GLY HXT H N N 183
HIS N N N N 184
HIS CA C N S 185
HIS C C N N 186
HIS O O N N 187
HIS CB C N N 188
HIS CG C Y N 189
HIS ND1 N Y N 190
HIS CD2 C Y N 191
HIS CE1 C Y N 192
HIS NE2 N Y N 193
HIS OXT O N N 194
HIS H H N N 195
HIS H2 H N N 196
HIS HA H N N 197
HIS HB2 H N N 198
HIS HB3 H N N 199
HIS HD1 H N N 200
HIS HD2 H N N 201
HIS HE1 H N N 202
HIS HE2 H N N 203
HIS HXT H N N 204
HOH O O N N 205
HOH H1 H N N 206
HOH H2 H N N 207
ILE N N N N 208
ILE CA C N S 209
ILE C C N N 210
ILE O O N N 211
ILE CB C N S 212
ILE CG1 C N N 213
ILE CG2 C N N 214
ILE CD1 C N N 215
ILE OXT O N N 216
ILE H H N N 217
ILE H2 H N N 218
ILE HA H N N 219
ILE HB H N N 220
ILE HG12 H N N 221
ILE HG13 H N N 222
ILE HG21 H N N 223
ILE HG22 H N N 224
ILE HG23 H N N 225
ILE HD11 H N N 226
ILE HD12 H N N 227
ILE HD13 H N N 228
ILE HXT H N N 229
LEU N N N N 230
LEU CA C N S 231
LEU C C N N 232
LEU O O N N 233
LEU CB C N N 234
LEU CG C N N 235
LEU CD1 C N N 236
LEU CD2 C N N 237
LEU OXT O N N 238
LEU H H N N 239
LEU H2 H N N 240
LEU HA H N N 241
LEU HB2 H N N 242
LEU HB3 H N N 243
LEU HG H N N 244
LEU HD11 H N N 245
LEU HD12 H N N 246
LEU HD13 H N N 247
LEU HD21 H N N 248
LEU HD22 H N N 249
LEU HD23 H N N 250
LEU HXT H N N 251
LYS N N N N 252
LYS CA C N S 253
LYS C C N N 254
LYS O O N N 255
LYS CB C N N 256
LYS CG C N N 257
LYS CD C N N 258
LYS CE C N N 259
LYS NZ N N N 260
LYS OXT O N N 261
LYS H H N N 262
LYS H2 H N N 263
LYS HA H N N 264
LYS HB2 H N N 265
LYS HB3 H N N 266
LYS HG2 H N N 267
LYS HG3 H N N 268
LYS HD2 H N N 269
LYS HD3 H N N 270
LYS HE2 H N N 271
LYS HE3 H N N 272
LYS HZ1 H N N 273
LYS HZ2 H N N 274
LYS HZ3 H N N 275
LYS HXT H N N 276
MET N N N N 277
MET CA C N S 278
MET C C N N 279
MET O O N N 280
MET CB C N N 281
MET CG C N N 282
MET SD S N N 283
MET CE C N N 284
MET OXT O N N 285
MET H H N N 286
MET H2 H N N 287
MET HA H N N 288
MET HB2 H N N 289
MET HB3 H N N 290
MET HG2 H N N 291
MET HG3 H N N 292
MET HE1 H N N 293
MET HE2 H N N 294
MET HE3 H N N 295
MET HXT H N N 296
NAG C1 C N R 297
NAG C2 C N R 298
NAG C3 C N R 299
NAG C4 C N S 300
NAG C5 C N R 301
NAG C6 C N N 302
NAG C7 C N N 303
NAG C8 C N N 304
NAG N2 N N N 305
NAG O1 O N N 306
NAG O3 O N N 307
NAG O4 O N N 308
NAG O5 O N N 309
NAG O6 O N N 310
NAG O7 O N N 311
NAG H1 H N N 312
NAG H2 H N N 313
NAG H3 H N N 314
NAG H4 H N N 315
NAG H5 H N N 316
NAG H61 H N N 317
NAG H62 H N N 318
NAG H81 H N N 319
NAG H82 H N N 320
NAG H83 H N N 321
NAG HN2 H N N 322
NAG HO1 H N N 323
NAG HO3 H N N 324
NAG HO4 H N N 325
NAG HO6 H N N 326
PHE N N N N 327
PHE CA C N S 328
PHE C C N N 329
PHE O O N N 330
PHE CB C N N 331
PHE CG C Y N 332
PHE CD1 C Y N 333
PHE CD2 C Y N 334
PHE CE1 C Y N 335
PHE CE2 C Y N 336
PHE CZ C Y N 337
PHE OXT O N N 338
PHE H H N N 339
PHE H2 H N N 340
PHE HA H N N 341
PHE HB2 H N N 342
PHE HB3 H N N 343
PHE HD1 H N N 344
PHE HD2 H N N 345
PHE HE1 H N N 346
PHE HE2 H N N 347
PHE HZ H N N 348
PHE HXT H N N 349
PRO N N N N 350
PRO CA C N S 351
PRO C C N N 352
PRO O O N N 353
PRO CB C N N 354
PRO CG C N N 355
PRO CD C N N 356
PRO OXT O N N 357
PRO H H N N 358
PRO HA H N N 359
PRO HB2 H N N 360
PRO HB3 H N N 361
PRO HG2 H N N 362
PRO HG3 H N N 363
PRO HD2 H N N 364
PRO HD3 H N N 365
PRO HXT H N N 366
SER N N N N 367
SER CA C N S 368
SER C C N N 369
SER O O N N 370
SER CB C N N 371
SER OG O N N 372
SER OXT O N N 373
SER H H N N 374
SER H2 H N N 375
SER HA H N N 376
SER HB2 H N N 377
SER HB3 H N N 378
SER HG H N N 379
SER HXT H N N 380
SO4 S S N N 381
SO4 O1 O N N 382
SO4 O2 O N N 383
SO4 O3 O N N 384
SO4 O4 O N N 385
THR N N N N 386
THR CA C N S 387
THR C C N N 388
THR O O N N 389
THR CB C N R 390
THR OG1 O N N 391
THR CG2 C N N 392
THR OXT O N N 393
THR H H N N 394
THR H2 H N N 395
THR HA H N N 396
THR HB H N N 397
THR HG1 H N N 398
THR HG21 H N N 399
THR HG22 H N N 400
THR HG23 H N N 401
THR HXT H N N 402
TRP N N N N 403
TRP CA C N S 404
TRP C C N N 405
TRP O O N N 406
TRP CB C N N 407
TRP CG C Y N 408
TRP CD1 C Y N 409
TRP CD2 C Y N 410
TRP NE1 N Y N 411
TRP CE2 C Y N 412
TRP CE3 C Y N 413
TRP CZ2 C Y N 414
TRP CZ3 C Y N 415
TRP CH2 C Y N 416
TRP OXT O N N 417
TRP H H N N 418
TRP H2 H N N 419
TRP HA H N N 420
TRP HB2 H N N 421
TRP HB3 H N N 422
TRP HD1 H N N 423
TRP HE1 H N N 424
TRP HE3 H N N 425
TRP HZ2 H N N 426
TRP HZ3 H N N 427
TRP HH2 H N N 428
TRP HXT H N N 429
TYR N N N N 430
TYR CA C N S 431
TYR C C N N 432
TYR O O N N 433
TYR CB C N N 434
TYR CG C Y N 435
TYR CD1 C Y N 436
TYR CD2 C Y N 437
TYR CE1 C Y N 438
TYR CE2 C Y N 439
TYR CZ C Y N 440
TYR OH O N N 441
TYR OXT O N N 442
TYR H H N N 443
TYR H2 H N N 444
TYR HA H N N 445
TYR HB2 H N N 446
TYR HB3 H N N 447
TYR HD1 H N N 448
TYR HD2 H N N 449
TYR HE1 H N N 450
TYR HE2 H N N 451
TYR HH H N N 452
TYR HXT H N N 453
VAL N N N N 454
VAL CA C N S 455
VAL C C N N 456
VAL O O N N 457
VAL CB C N N 458
VAL CG1 C N N 459
VAL CG2 C N N 460
VAL OXT O N N 461
VAL H H N N 462
VAL H2 H N N 463
VAL HA H N N 464
VAL HB H N N 465
VAL HG11 H N N 466
VAL HG12 H N N 467
VAL HG13 H N N 468
VAL HG21 H N N 469
VAL HG22 H N N 470
VAL HG23 H N N 471
VAL HXT H N N 472
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
BMA C1 C2 sing N N 70
BMA C1 O1 sing N N 71
BMA C1 O5 sing N N 72
BMA C1 H1 sing N N 73
BMA C2 C3 sing N N 74
BMA C2 O2 sing N N 75
BMA C2 H2 sing N N 76
BMA C3 C4 sing N N 77
BMA C3 O3 sing N N 78
BMA C3 H3 sing N N 79
BMA C4 C5 sing N N 80
BMA C4 O4 sing N N 81
BMA C4 H4 sing N N 82
BMA C5 C6 sing N N 83
BMA C5 O5 sing N N 84
BMA C5 H5 sing N N 85
BMA C6 O6 sing N N 86
BMA C6 H61 sing N N 87
BMA C6 H62 sing N N 88
BMA O1 HO1 sing N N 89
BMA O2 HO2 sing N N 90
BMA O3 HO3 sing N N 91
BMA O4 HO4 sing N N 92
BMA O6 HO6 sing N N 93
CYS N CA sing N N 94
CYS N H sing N N 95
CYS N H2 sing N N 96
CYS CA C sing N N 97
CYS CA CB sing N N 98
CYS CA HA sing N N 99
CYS C O doub N N 100
CYS C OXT sing N N 101
CYS CB SG sing N N 102
CYS CB HB2 sing N N 103
CYS CB HB3 sing N N 104
CYS SG HG sing N N 105
CYS OXT HXT sing N N 106
FUL C1 C2 sing N N 107
FUL C1 O5 sing N N 108
FUL C1 O1 sing N N 109
FUL C1 H1 sing N N 110
FUL C2 O2 sing N N 111
FUL C2 C3 sing N N 112
FUL C2 H2 sing N N 113
FUL O2 HO2 sing N N 114
FUL C3 O3 sing N N 115
FUL C3 C4 sing N N 116
FUL C3 H3 sing N N 117
FUL O3 HO3 sing N N 118
FUL C4 O4 sing N N 119
FUL C4 C5 sing N N 120
FUL C4 H4 sing N N 121
FUL O4 HO4 sing N N 122
FUL C5 C6 sing N N 123
FUL C5 O5 sing N N 124
FUL C5 H5 sing N N 125
FUL C6 H61 sing N N 126
FUL C6 H62 sing N N 127
FUL C6 H63 sing N N 128
FUL O1 HO1 sing N N 129
GLN N CA sing N N 130
GLN N H sing N N 131
GLN N H2 sing N N 132
GLN CA C sing N N 133
GLN CA CB sing N N 134
GLN CA HA sing N N 135
GLN C O doub N N 136
GLN C OXT sing N N 137
GLN CB CG sing N N 138
GLN CB HB2 sing N N 139
GLN CB HB3 sing N N 140
GLN CG CD sing N N 141
GLN CG HG2 sing N N 142
GLN CG HG3 sing N N 143
GLN CD OE1 doub N N 144
GLN CD NE2 sing N N 145
GLN NE2 HE21 sing N N 146
GLN NE2 HE22 sing N N 147
GLN OXT HXT sing N N 148
GLU N CA sing N N 149
GLU N H sing N N 150
GLU N H2 sing N N 151
GLU CA C sing N N 152
GLU CA CB sing N N 153
GLU CA HA sing N N 154
GLU C O doub N N 155
GLU C OXT sing N N 156
GLU CB CG sing N N 157
GLU CB HB2 sing N N 158
GLU CB HB3 sing N N 159
GLU CG CD sing N N 160
GLU CG HG2 sing N N 161
GLU CG HG3 sing N N 162
GLU CD OE1 doub N N 163
GLU CD OE2 sing N N 164
GLU OE2 HE2 sing N N 165
GLU OXT HXT sing N N 166
GLY N CA sing N N 167
GLY N H sing N N 168
GLY N H2 sing N N 169
GLY CA C sing N N 170
GLY CA HA2 sing N N 171
GLY CA HA3 sing N N 172
GLY C O doub N N 173
GLY C OXT sing N N 174
GLY OXT HXT sing N N 175
HIS N CA sing N N 176
HIS N H sing N N 177
HIS N H2 sing N N 178
HIS CA C sing N N 179
HIS CA CB sing N N 180
HIS CA HA sing N N 181
HIS C O doub N N 182
HIS C OXT sing N N 183
HIS CB CG sing N N 184
HIS CB HB2 sing N N 185
HIS CB HB3 sing N N 186
HIS CG ND1 sing Y N 187
HIS CG CD2 doub Y N 188
HIS ND1 CE1 doub Y N 189
HIS ND1 HD1 sing N N 190
HIS CD2 NE2 sing Y N 191
HIS CD2 HD2 sing N N 192
HIS CE1 NE2 sing Y N 193
HIS CE1 HE1 sing N N 194
HIS NE2 HE2 sing N N 195
HIS OXT HXT sing N N 196
HOH O H1 sing N N 197
HOH O H2 sing N N 198
ILE N CA sing N N 199
ILE N H sing N N 200
ILE N H2 sing N N 201
ILE CA C sing N N 202
ILE CA CB sing N N 203
ILE CA HA sing N N 204
ILE C O doub N N 205
ILE C OXT sing N N 206
ILE CB CG1 sing N N 207
ILE CB CG2 sing N N 208
ILE CB HB sing N N 209
ILE CG1 CD1 sing N N 210
ILE CG1 HG12 sing N N 211
ILE CG1 HG13 sing N N 212
ILE CG2 HG21 sing N N 213
ILE CG2 HG22 sing N N 214
ILE CG2 HG23 sing N N 215
ILE CD1 HD11 sing N N 216
ILE CD1 HD12 sing N N 217
ILE CD1 HD13 sing N N 218
ILE OXT HXT sing N N 219
LEU N CA sing N N 220
LEU N H sing N N 221
LEU N H2 sing N N 222
LEU CA C sing N N 223
LEU CA CB sing N N 224
LEU CA HA sing N N 225
LEU C O doub N N 226
LEU C OXT sing N N 227
LEU CB CG sing N N 228
LEU CB HB2 sing N N 229
LEU CB HB3 sing N N 230
LEU CG CD1 sing N N 231
LEU CG CD2 sing N N 232
LEU CG HG sing N N 233
LEU CD1 HD11 sing N N 234
LEU CD1 HD12 sing N N 235
LEU CD1 HD13 sing N N 236
LEU CD2 HD21 sing N N 237
LEU CD2 HD22 sing N N 238
LEU CD2 HD23 sing N N 239
LEU OXT HXT sing N N 240
LYS N CA sing N N 241
LYS N H sing N N 242
LYS N H2 sing N N 243
LYS CA C sing N N 244
LYS CA CB sing N N 245
LYS CA HA sing N N 246
LYS C O doub N N 247
LYS C OXT sing N N 248
LYS CB CG sing N N 249
LYS CB HB2 sing N N 250
LYS CB HB3 sing N N 251
LYS CG CD sing N N 252
LYS CG HG2 sing N N 253
LYS CG HG3 sing N N 254
LYS CD CE sing N N 255
LYS CD HD2 sing N N 256
LYS CD HD3 sing N N 257
LYS CE NZ sing N N 258
LYS CE HE2 sing N N 259
LYS CE HE3 sing N N 260
LYS NZ HZ1 sing N N 261
LYS NZ HZ2 sing N N 262
LYS NZ HZ3 sing N N 263
LYS OXT HXT sing N N 264
MET N CA sing N N 265
MET N H sing N N 266
MET N H2 sing N N 267
MET CA C sing N N 268
MET CA CB sing N N 269
MET CA HA sing N N 270
MET C O doub N N 271
MET C OXT sing N N 272
MET CB CG sing N N 273
MET CB HB2 sing N N 274
MET CB HB3 sing N N 275
MET CG SD sing N N 276
MET CG HG2 sing N N 277
MET CG HG3 sing N N 278
MET SD CE sing N N 279
MET CE HE1 sing N N 280
MET CE HE2 sing N N 281
MET CE HE3 sing N N 282
MET OXT HXT sing N N 283
NAG C1 C2 sing N N 284
NAG C1 O1 sing N N 285
NAG C1 O5 sing N N 286
NAG C1 H1 sing N N 287
NAG C2 C3 sing N N 288
NAG C2 N2 sing N N 289
NAG C2 H2 sing N N 290
NAG C3 C4 sing N N 291
NAG C3 O3 sing N N 292
NAG C3 H3 sing N N 293
NAG C4 C5 sing N N 294
NAG C4 O4 sing N N 295
NAG C4 H4 sing N N 296
NAG C5 C6 sing N N 297
NAG C5 O5 sing N N 298
NAG C5 H5 sing N N 299
NAG C6 O6 sing N N 300
NAG C6 H61 sing N N 301
NAG C6 H62 sing N N 302
NAG C7 C8 sing N N 303
NAG C7 N2 sing N N 304
NAG C7 O7 doub N N 305
NAG C8 H81 sing N N 306
NAG C8 H82 sing N N 307
NAG C8 H83 sing N N 308
NAG N2 HN2 sing N N 309
NAG O1 HO1 sing N N 310
NAG O3 HO3 sing N N 311
NAG O4 HO4 sing N N 312
NAG O6 HO6 sing N N 313
PHE N CA sing N N 314
PHE N H sing N N 315
PHE N H2 sing N N 316
PHE CA C sing N N 317
PHE CA CB sing N N 318
PHE CA HA sing N N 319
PHE C O doub N N 320
PHE C OXT sing N N 321
PHE CB CG sing N N 322
PHE CB HB2 sing N N 323
PHE CB HB3 sing N N 324
PHE CG CD1 doub Y N 325
PHE CG CD2 sing Y N 326
PHE CD1 CE1 sing Y N 327
PHE CD1 HD1 sing N N 328
PHE CD2 CE2 doub Y N 329
PHE CD2 HD2 sing N N 330
PHE CE1 CZ doub Y N 331
PHE CE1 HE1 sing N N 332
PHE CE2 CZ sing Y N 333
PHE CE2 HE2 sing N N 334
PHE CZ HZ sing N N 335
PHE OXT HXT sing N N 336
PRO N CA sing N N 337
PRO N CD sing N N 338
PRO N H sing N N 339
PRO CA C sing N N 340
PRO CA CB sing N N 341
PRO CA HA sing N N 342
PRO C O doub N N 343
PRO C OXT sing N N 344
PRO CB CG sing N N 345
PRO CB HB2 sing N N 346
PRO CB HB3 sing N N 347
PRO CG CD sing N N 348
PRO CG HG2 sing N N 349
PRO CG HG3 sing N N 350
PRO CD HD2 sing N N 351
PRO CD HD3 sing N N 352
PRO OXT HXT sing N N 353
SER N CA sing N N 354
SER N H sing N N 355
SER N H2 sing N N 356
SER CA C sing N N 357
SER CA CB sing N N 358
SER CA HA sing N N 359
SER C O doub N N 360
SER C OXT sing N N 361
SER CB OG sing N N 362
SER CB HB2 sing N N 363
SER CB HB3 sing N N 364
SER OG HG sing N N 365
SER OXT HXT sing N N 366
SO4 S O1 doub N N 367
SO4 S O2 doub N N 368
SO4 S O3 sing N N 369
SO4 S O4 sing N N 370
THR N CA sing N N 371
THR N H sing N N 372
THR N H2 sing N N 373
THR CA C sing N N 374
THR CA CB sing N N 375
THR CA HA sing N N 376
THR C O doub N N 377
THR C OXT sing N N 378
THR CB OG1 sing N N 379
THR CB CG2 sing N N 380
THR CB HB sing N N 381
THR OG1 HG1 sing N N 382
THR CG2 HG21 sing N N 383
THR CG2 HG22 sing N N 384
THR CG2 HG23 sing N N 385
THR OXT HXT sing N N 386
TRP N CA sing N N 387
TRP N H sing N N 388
TRP N H2 sing N N 389
TRP CA C sing N N 390
TRP CA CB sing N N 391
TRP CA HA sing N N 392
TRP C O doub N N 393
TRP C OXT sing N N 394
TRP CB CG sing N N 395
TRP CB HB2 sing N N 396
TRP CB HB3 sing N N 397
TRP CG CD1 doub Y N 398
TRP CG CD2 sing Y N 399
TRP CD1 NE1 sing Y N 400
TRP CD1 HD1 sing N N 401
TRP CD2 CE2 doub Y N 402
TRP CD2 CE3 sing Y N 403
TRP NE1 CE2 sing Y N 404
TRP NE1 HE1 sing N N 405
TRP CE2 CZ2 sing Y N 406
TRP CE3 CZ3 doub Y N 407
TRP CE3 HE3 sing N N 408
TRP CZ2 CH2 doub Y N 409
TRP CZ2 HZ2 sing N N 410
TRP CZ3 CH2 sing Y N 411
TRP CZ3 HZ3 sing N N 412
TRP CH2 HH2 sing N N 413
TRP OXT HXT sing N N 414
TYR N CA sing N N 415
TYR N H sing N N 416
TYR N H2 sing N N 417
TYR CA C sing N N 418
TYR CA CB sing N N 419
TYR CA HA sing N N 420
TYR C O doub N N 421
TYR C OXT sing N N 422
TYR CB CG sing N N 423
TYR CB HB2 sing N N 424
TYR CB HB3 sing N N 425
TYR CG CD1 doub Y N 426
TYR CG CD2 sing Y N 427
TYR CD1 CE1 sing Y N 428
TYR CD1 HD1 sing N N 429
TYR CD2 CE2 doub Y N 430
TYR CD2 HD2 sing N N 431
TYR CE1 CZ doub Y N 432
TYR CE1 HE1 sing N N 433
TYR CE2 CZ sing Y N 434
TYR CE2 HE2 sing N N 435
TYR CZ OH sing N N 436
TYR OH HH sing N N 437
TYR OXT HXT sing N N 438
VAL N CA sing N N 439
VAL N H sing N N 440
VAL N H2 sing N N 441
VAL CA C sing N N 442
VAL CA CB sing N N 443
VAL CA HA sing N N 444
VAL C O doub N N 445
VAL C OXT sing N N 446
VAL CB CG1 sing N N 447
VAL CB CG2 sing N N 448
VAL CB HB sing N N 449
VAL CG1 HG11 sing N N 450
VAL CG1 HG12 sing N N 451
VAL CG1 HG13 sing N N 452
VAL CG2 HG21 sing N N 453
VAL CG2 HG22 sing N N 454
VAL CG2 HG23 sing N N 455
VAL OXT HXT sing N N 456
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 NAG 1 n
2 NAG 2 n
2 BMA 3 n
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 2Z62
_pdbx_initial_refinement_model.details ?
#
_atom_sites.entry_id 3UL8
_atom_sites.fract_transf_matrix[1][1] 0.031211
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.019802
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.005187
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_