data_3ULD # _entry.id 3ULD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ULD pdb_00003uld 10.2210/pdb3uld/pdb NDB NA1491 ? ? RCSB RCSB068899 ? ? WWPDB D_1000068899 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3TWH _pdbx_database_related.details 'SELENIUM DERIVATIZED RNA/DNA HYBRID IN COMPLEX WITH RNASE H CATALYTIC DOMAIN MUTANT D132N' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ULD _pdbx_database_status.recvd_initial_deposition_date 2011-11-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gan, J.H.' 1 'Abdur, R.' 2 'Huang, Z.' 3 # _citation.id primary _citation.title 'RNA/DNA hybrid in complex with RNase H catalytic domain mutant D132N' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gan, J.H.' 1 ? primary 'Abdur, R.' 2 ? primary 'Huang, Z.' 3 ? # _cell.entry_id 3ULD _cell.length_a 81.301 _cell.length_b 37.672 _cell.length_c 62.378 _cell.angle_alpha 90.00 _cell.angle_beta 96.76 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3ULD _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonuclease H' 16329.478 1 3.1.26.4 D132N 'catalytic domain' ? 2 polymer syn ;RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') ; 1875.189 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*AP*TP*GP*TP*CP*(PGN))-3') ; 1904.208 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 5 water nat water 18.015 124 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNase H' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQ TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; ;GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQ TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; A ? 2 polyribonucleotide no no UCGACA UCGACA B ? 3 polydeoxyribonucleotide no yes '(DA)(DT)(DG)(DT)(DC)(PGN)' ATGTCG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 LYS n 1 7 GLU n 1 8 GLU n 1 9 ILE n 1 10 ILE n 1 11 TRP n 1 12 GLU n 1 13 SER n 1 14 LEU n 1 15 SER n 1 16 VAL n 1 17 ASP n 1 18 VAL n 1 19 GLY n 1 20 SER n 1 21 GLN n 1 22 GLY n 1 23 ASN n 1 24 PRO n 1 25 GLY n 1 26 ILE n 1 27 VAL n 1 28 GLU n 1 29 TYR n 1 30 LYS n 1 31 GLY n 1 32 VAL n 1 33 ASP n 1 34 THR n 1 35 LYS n 1 36 THR n 1 37 GLY n 1 38 GLU n 1 39 VAL n 1 40 LEU n 1 41 PHE n 1 42 GLU n 1 43 ARG n 1 44 GLU n 1 45 PRO n 1 46 ILE n 1 47 PRO n 1 48 ILE n 1 49 GLY n 1 50 THR n 1 51 ASN n 1 52 ASN n 1 53 MET n 1 54 GLY n 1 55 GLU n 1 56 PHE n 1 57 LEU n 1 58 ALA n 1 59 ILE n 1 60 VAL n 1 61 HIS n 1 62 GLY n 1 63 LEU n 1 64 ARG n 1 65 TYR n 1 66 LEU n 1 67 LYS n 1 68 GLU n 1 69 ARG n 1 70 ASN n 1 71 SER n 1 72 ARG n 1 73 LYS n 1 74 PRO n 1 75 ILE n 1 76 TYR n 1 77 SER n 1 78 ASN n 1 79 SER n 1 80 GLN n 1 81 THR n 1 82 ALA n 1 83 ILE n 1 84 LYS n 1 85 TRP n 1 86 VAL n 1 87 LYS n 1 88 ASP n 1 89 LYS n 1 90 LYS n 1 91 ALA n 1 92 LYS n 1 93 SER n 1 94 THR n 1 95 LEU n 1 96 VAL n 1 97 ARG n 1 98 ASN n 1 99 GLU n 1 100 GLU n 1 101 THR n 1 102 ALA n 1 103 LEU n 1 104 ILE n 1 105 TRP n 1 106 LYS n 1 107 LEU n 1 108 VAL n 1 109 ASP n 1 110 GLU n 1 111 ALA n 1 112 GLU n 1 113 GLU n 1 114 TRP n 1 115 LEU n 1 116 ASN n 1 117 THR n 1 118 HIS n 1 119 THR n 1 120 TYR n 1 121 GLU n 1 122 THR n 1 123 PRO n 1 124 ILE n 1 125 LEU n 1 126 LYS n 1 127 TRP n 1 128 GLN n 1 129 THR n 1 130 ASP n 1 131 LYS n 1 132 TRP n 1 133 GLY n 1 134 GLU n 1 135 ILE n 1 136 LYS n 1 137 ALA n 1 138 ASP n 1 139 TYR n 1 140 GLY n 1 141 ARG n 1 142 LYS n 2 1 U n 2 2 C n 2 3 G n 2 4 A n 2 5 C n 2 6 A n 3 1 DA n 3 2 DT n 3 3 DG n 3 4 DT n 3 5 DC n 3 6 PGN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rnhA, BH0863' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus halodurans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 86665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 866768 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-Gold(DE3)pLysS AG' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RNH1_BACHD Q9KEI9 1 ;AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIK WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; 59 ? 2 PDB 3ULD 3ULD 2 ? ? ? 3 PDB 3ULD 3ULD 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ULD A 5 ? 142 ? Q9KEI9 59 ? 196 ? 59 196 2 2 3ULD B 1 ? 6 ? 3ULD 1 ? 6 ? 1 6 3 3 3ULD C 1 ? 6 ? 3ULD 1 ? 6 ? 1 6 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ULD GLY A 1 ? UNP Q9KEI9 ? ? 'expression tag' 55 1 1 3ULD SER A 2 ? UNP Q9KEI9 ? ? 'expression tag' 56 2 1 3ULD HIS A 3 ? UNP Q9KEI9 ? ? 'expression tag' 57 3 1 3ULD MET A 4 ? UNP Q9KEI9 ? ? 'expression tag' 58 4 1 3ULD ASN A 78 ? UNP Q9KEI9 ASP 132 'engineered mutation' 132 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PGN 'DNA linking' n "2'-DEOXYGUANOSINE-3',5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ULD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_percent_sol 47.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '0.04 M Magnesium chloride, 0.05 M Sodium cacodylate, 5% MPD, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-10-25 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirror _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9765 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.3' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.3 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9765 # _reflns.entry_id 3ULD _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 61.94 _reflns.d_resolution_high 1.6 _reflns.number_obs 23657 _reflns.number_all 25140 _reflns.percent_possible_obs 94.1 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.639 _reflns_shell.percent_possible_all 94.1 _reflns_shell.Rmerge_I_obs 0.08 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 16.9 _reflns_shell.pdbx_redundancy 4.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 25140 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3ULD _refine.ls_number_reflns_obs 22402 _refine.ls_number_reflns_all 25140 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 93.89 _refine.ls_R_factor_obs 0.19589 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19366 _refine.ls_R_factor_R_free 0.23463 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1201 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.B_iso_mean 21.836 _refine.aniso_B[1][1] 0.11 _refine.aniso_B[2][2] 1.03 _refine.aniso_B[3][3] -1.27 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.58 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 3TWH' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.100 _refine.overall_SU_ML 0.072 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.080 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1085 _refine_hist.pdbx_number_atoms_nucleic_acid 249 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 1462 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.012 0.022 ? 1408 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.560 2.175 ? 1966 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.699 5.000 ? 139 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 35.193 25.370 ? 54 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 14.499 15.000 ? 208 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 13.428 15.000 ? 5 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.096 0.200 ? 221 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.021 ? 976 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.882 1.500 ? 672 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1.639 2.000 ? 1096 ? 'X-RAY DIFFRACTION' r_scbond_it 2.304 3.000 ? 736 ? 'X-RAY DIFFRACTION' r_scangle_it 3.540 4.500 ? 867 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.60 _refine_ls_shell.d_res_low 1.639 _refine_ls_shell.number_reflns_R_work 1107 _refine_ls_shell.R_factor_R_work 0.267 _refine_ls_shell.percent_reflns_obs 62.88 _refine_ls_shell.R_factor_R_free 0.297 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1164 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3ULD _struct.title 'High resolution structure of DNA/RNA hybrid in complex with RNase H catalytic domain D132N mutant' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ULD _struct_keywords.pdbx_keywords HYDROLASE/RNA/DNA _struct_keywords.text 'RNase H, DNA/RNA hybrid, ENDONUCLEASE, HYDROLASE, MAGNESIUM, RIBONUCLEASE H, HYDROLASE-RNA-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 50 ? ARG A 69 ? THR A 104 ARG A 123 1 ? 20 HELX_P HELX_P2 2 SER A 79 ? LYS A 89 ? SER A 133 LYS A 143 1 ? 11 HELX_P HELX_P3 3 THR A 101 ? ASN A 116 ? THR A 155 ASN A 170 1 ? 16 HELX_P HELX_P4 4 GLN A 128 ? GLY A 133 ? GLN A 182 GLY A 187 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C DC 5 "O3'" ? ? ? 1_555 C PGN 6 P ? ? C DC 5 C PGN 6 1_555 ? ? ? ? ? ? ? 1.597 ? ? metalc1 metalc ? ? A ASP 17 OD1 A ? ? 1_555 D MG . MG ? ? A ASP 71 A MG 201 1_555 ? ? ? ? ? ? ? 2.221 ? ? metalc2 metalc ? ? A ASP 17 OD2 A ? ? 1_555 E MG . MG ? ? A ASP 71 A MG 202 1_555 ? ? ? ? ? ? ? 1.993 ? ? metalc3 metalc ? ? A GLU 55 OE2 ? ? ? 1_555 D MG . MG ? ? A GLU 109 A MG 201 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc4 metalc ? ? A ASN 78 OD1 ? ? ? 1_555 D MG . MG ? ? A ASN 132 A MG 201 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc5 metalc ? ? A ASP 138 OD2 ? ? ? 1_555 E MG . MG ? ? A ASP 192 A MG 202 1_555 ? ? ? ? ? ? ? 2.473 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 B A 6 "O3'" ? ? A MG 201 B A 6 1_555 ? ? ? ? ? ? ? 2.737 ? ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 202 A HOH 366 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 202 A HOH 383 1_555 ? ? ? ? ? ? ? 1.781 ? ? metalc9 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 203 A HOH 338 1_555 ? ? ? ? ? ? ? 1.908 ? ? metalc10 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 203 A HOH 356 1_555 ? ? ? ? ? ? ? 1.915 ? ? hydrog1 hydrog ? ? B C 2 N3 ? ? ? 1_555 C PGN 6 N1 ? ? B C 2 C PGN 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B C 2 N4 ? ? ? 1_555 C PGN 6 O6 ? ? B C 2 C PGN 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B C 2 O2 ? ? ? 1_555 C PGN 6 N2 ? ? B C 2 C PGN 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 3 N1 ? ? ? 1_555 C DC 5 N3 ? ? B G 3 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 3 N2 ? ? ? 1_555 C DC 5 O2 ? ? B G 3 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 3 O6 ? ? ? 1_555 C DC 5 N4 ? ? B G 3 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B A 4 N1 ? ? ? 1_555 C DT 4 N3 ? ? B A 4 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B A 4 N6 ? ? ? 1_555 C DT 4 O4 ? ? B A 4 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B C 5 N3 ? ? ? 1_555 C DG 3 N1 ? ? B C 5 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B C 5 N4 ? ? ? 1_555 C DG 3 O6 ? ? B C 5 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B C 5 O2 ? ? ? 1_555 C DG 3 N2 ? ? B C 5 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B A 6 N1 ? ? ? 1_555 C DT 2 N3 ? ? B A 6 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B A 6 N6 ? ? ? 1_555 C DT 2 O4 ? ? B A 6 C DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 23 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 77 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 24 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 78 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.41 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 39 ? GLY A 49 ? VAL A 93 GLY A 103 A 2 GLY A 25 ? ASP A 33 ? GLY A 79 ASP A 87 A 3 LEU A 14 ? GLN A 21 ? LEU A 68 GLN A 75 A 4 ILE A 75 ? SER A 77 ? ILE A 129 SER A 131 A 5 ILE A 124 ? LYS A 126 ? ILE A 178 LYS A 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 46 ? O ILE A 100 N VAL A 27 ? N VAL A 81 A 2 3 O VAL A 32 ? O VAL A 86 N SER A 15 ? N SER A 69 A 3 4 N LEU A 14 ? N LEU A 68 O TYR A 76 ? O TYR A 130 A 4 5 N ILE A 75 ? N ILE A 129 O LEU A 125 ? O LEU A 179 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 201 ? 6 'BINDING SITE FOR RESIDUE MG A 201' AC2 Software A MG 202 ? 6 'BINDING SITE FOR RESIDUE MG A 202' AC3 Software A MG 203 ? 4 'BINDING SITE FOR RESIDUE MG A 203' AC4 Software A MG 204 ? 3 'BINDING SITE FOR RESIDUE MG A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 17 ? ASP A 71 . ? 1_555 ? 2 AC1 6 GLU A 55 ? GLU A 109 . ? 1_555 ? 3 AC1 6 ASN A 78 ? ASN A 132 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH A 301 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH A 302 . ? 1_555 ? 6 AC1 6 A B 6 ? A B 6 . ? 1_555 ? 7 AC2 6 ASP A 17 ? ASP A 71 . ? 1_555 ? 8 AC2 6 VAL A 18 ? VAL A 72 . ? 1_555 ? 9 AC2 6 ASP A 138 ? ASP A 192 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH A 366 . ? 1_555 ? 11 AC2 6 HOH H . ? HOH A 383 . ? 1_555 ? 12 AC2 6 U B 1 ? U B 1 . ? 4_546 ? 13 AC3 4 ARG A 64 ? ARG A 118 . ? 1_555 ? 14 AC3 4 TRP A 114 ? TRP A 168 . ? 1_555 ? 15 AC3 4 HOH H . ? HOH A 338 . ? 1_555 ? 16 AC3 4 HOH H . ? HOH A 356 . ? 1_555 ? 17 AC4 3 TYR A 29 ? TYR A 83 . ? 1_555 ? 18 AC4 3 ARG A 43 ? ARG A 97 . ? 1_555 ? 19 AC4 3 HOH H . ? HOH A 303 . ? 1_555 ? # _database_PDB_matrix.entry_id 3ULD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ULD _atom_sites.fract_transf_matrix[1][1] 0.012300 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001458 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026545 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016144 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 55 ? ? ? A . n A 1 2 SER 2 56 ? ? ? A . n A 1 3 HIS 3 57 ? ? ? A . n A 1 4 MET 4 58 ? ? ? A . n A 1 5 ALA 5 59 ? ? ? A . n A 1 6 LYS 6 60 ? ? ? A . n A 1 7 GLU 7 61 61 GLU GLU A . n A 1 8 GLU 8 62 62 GLU GLU A . n A 1 9 ILE 9 63 63 ILE ILE A . n A 1 10 ILE 10 64 64 ILE ILE A . n A 1 11 TRP 11 65 65 TRP TRP A . n A 1 12 GLU 12 66 66 GLU GLU A . n A 1 13 SER 13 67 67 SER SER A . n A 1 14 LEU 14 68 68 LEU LEU A . n A 1 15 SER 15 69 69 SER SER A . n A 1 16 VAL 16 70 70 VAL VAL A . n A 1 17 ASP 17 71 71 ASP ASP A . n A 1 18 VAL 18 72 72 VAL VAL A . n A 1 19 GLY 19 73 73 GLY GLY A . n A 1 20 SER 20 74 74 SER SER A . n A 1 21 GLN 21 75 75 GLN GLN A . n A 1 22 GLY 22 76 76 GLY GLY A . n A 1 23 ASN 23 77 77 ASN ASN A . n A 1 24 PRO 24 78 78 PRO PRO A . n A 1 25 GLY 25 79 79 GLY GLY A . n A 1 26 ILE 26 80 80 ILE ILE A . n A 1 27 VAL 27 81 81 VAL VAL A . n A 1 28 GLU 28 82 82 GLU GLU A . n A 1 29 TYR 29 83 83 TYR TYR A . n A 1 30 LYS 30 84 84 LYS LYS A . n A 1 31 GLY 31 85 85 GLY GLY A . n A 1 32 VAL 32 86 86 VAL VAL A . n A 1 33 ASP 33 87 87 ASP ASP A . n A 1 34 THR 34 88 88 THR THR A . n A 1 35 LYS 35 89 89 LYS LYS A . n A 1 36 THR 36 90 90 THR THR A . n A 1 37 GLY 37 91 91 GLY GLY A . n A 1 38 GLU 38 92 92 GLU GLU A . n A 1 39 VAL 39 93 93 VAL VAL A . n A 1 40 LEU 40 94 94 LEU LEU A . n A 1 41 PHE 41 95 95 PHE PHE A . n A 1 42 GLU 42 96 96 GLU GLU A . n A 1 43 ARG 43 97 97 ARG ARG A . n A 1 44 GLU 44 98 98 GLU GLU A . n A 1 45 PRO 45 99 99 PRO PRO A . n A 1 46 ILE 46 100 100 ILE ILE A . n A 1 47 PRO 47 101 101 PRO PRO A . n A 1 48 ILE 48 102 102 ILE ILE A . n A 1 49 GLY 49 103 103 GLY GLY A . n A 1 50 THR 50 104 104 THR THR A . n A 1 51 ASN 51 105 105 ASN ASN A . n A 1 52 ASN 52 106 106 ASN ASN A . n A 1 53 MET 53 107 107 MET MET A . n A 1 54 GLY 54 108 108 GLY GLY A . n A 1 55 GLU 55 109 109 GLU GLU A . n A 1 56 PHE 56 110 110 PHE PHE A . n A 1 57 LEU 57 111 111 LEU LEU A . n A 1 58 ALA 58 112 112 ALA ALA A . n A 1 59 ILE 59 113 113 ILE ILE A . n A 1 60 VAL 60 114 114 VAL VAL A . n A 1 61 HIS 61 115 115 HIS HIS A . n A 1 62 GLY 62 116 116 GLY GLY A . n A 1 63 LEU 63 117 117 LEU LEU A . n A 1 64 ARG 64 118 118 ARG ARG A . n A 1 65 TYR 65 119 119 TYR TYR A . n A 1 66 LEU 66 120 120 LEU LEU A . n A 1 67 LYS 67 121 121 LYS LYS A . n A 1 68 GLU 68 122 122 GLU GLU A . n A 1 69 ARG 69 123 123 ARG ARG A . n A 1 70 ASN 70 124 124 ASN ASN A . n A 1 71 SER 71 125 125 SER SER A . n A 1 72 ARG 72 126 126 ARG ARG A . n A 1 73 LYS 73 127 127 LYS LYS A . n A 1 74 PRO 74 128 128 PRO PRO A . n A 1 75 ILE 75 129 129 ILE ILE A . n A 1 76 TYR 76 130 130 TYR TYR A . n A 1 77 SER 77 131 131 SER SER A . n A 1 78 ASN 78 132 132 ASN ASN A . n A 1 79 SER 79 133 133 SER SER A . n A 1 80 GLN 80 134 134 GLN GLN A . n A 1 81 THR 81 135 135 THR THR A . n A 1 82 ALA 82 136 136 ALA ALA A . n A 1 83 ILE 83 137 137 ILE ILE A . n A 1 84 LYS 84 138 138 LYS LYS A . n A 1 85 TRP 85 139 139 TRP TRP A . n A 1 86 VAL 86 140 140 VAL VAL A . n A 1 87 LYS 87 141 141 LYS LYS A . n A 1 88 ASP 88 142 142 ASP ASP A . n A 1 89 LYS 89 143 143 LYS LYS A . n A 1 90 LYS 90 144 144 LYS LYS A . n A 1 91 ALA 91 145 145 ALA ALA A . n A 1 92 LYS 92 146 146 LYS LYS A . n A 1 93 SER 93 147 147 SER SER A . n A 1 94 THR 94 148 148 THR THR A . n A 1 95 LEU 95 149 149 LEU LEU A . n A 1 96 VAL 96 150 150 VAL VAL A . n A 1 97 ARG 97 151 151 ARG ARG A . n A 1 98 ASN 98 152 152 ASN ASN A . n A 1 99 GLU 99 153 153 GLU GLU A . n A 1 100 GLU 100 154 154 GLU GLU A . n A 1 101 THR 101 155 155 THR THR A . n A 1 102 ALA 102 156 156 ALA ALA A . n A 1 103 LEU 103 157 157 LEU LEU A . n A 1 104 ILE 104 158 158 ILE ILE A . n A 1 105 TRP 105 159 159 TRP TRP A . n A 1 106 LYS 106 160 160 LYS LYS A . n A 1 107 LEU 107 161 161 LEU LEU A . n A 1 108 VAL 108 162 162 VAL VAL A . n A 1 109 ASP 109 163 163 ASP ASP A . n A 1 110 GLU 110 164 164 GLU GLU A . n A 1 111 ALA 111 165 165 ALA ALA A . n A 1 112 GLU 112 166 166 GLU GLU A . n A 1 113 GLU 113 167 167 GLU GLU A . n A 1 114 TRP 114 168 168 TRP TRP A . n A 1 115 LEU 115 169 169 LEU LEU A . n A 1 116 ASN 116 170 170 ASN ASN A . n A 1 117 THR 117 171 171 THR THR A . n A 1 118 HIS 118 172 172 HIS HIS A . n A 1 119 THR 119 173 173 THR THR A . n A 1 120 TYR 120 174 174 TYR TYR A . n A 1 121 GLU 121 175 175 GLU GLU A . n A 1 122 THR 122 176 176 THR THR A . n A 1 123 PRO 123 177 177 PRO PRO A . n A 1 124 ILE 124 178 178 ILE ILE A . n A 1 125 LEU 125 179 179 LEU LEU A . n A 1 126 LYS 126 180 180 LYS LYS A . n A 1 127 TRP 127 181 181 TRP TRP A . n A 1 128 GLN 128 182 182 GLN GLN A . n A 1 129 THR 129 183 183 THR THR A . n A 1 130 ASP 130 184 184 ASP ASP A . n A 1 131 LYS 131 185 185 LYS LYS A . n A 1 132 TRP 132 186 186 TRP TRP A . n A 1 133 GLY 133 187 187 GLY GLY A . n A 1 134 GLU 134 188 188 GLU GLU A . n A 1 135 ILE 135 189 189 ILE ILE A . n A 1 136 LYS 136 190 190 LYS LYS A . n A 1 137 ALA 137 191 191 ALA ALA A . n A 1 138 ASP 138 192 192 ASP ASP A . n A 1 139 TYR 139 193 193 TYR TYR A . n A 1 140 GLY 140 194 ? ? ? A . n A 1 141 ARG 141 195 ? ? ? A . n A 1 142 LYS 142 196 ? ? ? A . n B 2 1 U 1 1 1 U U B . n B 2 2 C 2 2 2 C C B . n B 2 3 G 3 3 3 G G B . n B 2 4 A 4 4 4 A A B . n B 2 5 C 5 5 5 C C B . n B 2 6 A 6 6 6 A A B . n C 3 1 DA 1 1 1 DA DA C . n C 3 2 DT 2 2 2 DT DT C . n C 3 3 DG 3 3 3 DG DG C . n C 3 4 DT 4 4 4 DT DT C . n C 3 5 DC 5 5 5 DC DC C . n C 3 6 PGN 6 6 6 PGN PGN C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG 1 201 1 MG MG A . E 4 MG 1 202 2 MG MG A . F 4 MG 1 203 3 MG MG A . G 4 MG 1 204 4 MG MG A . H 5 HOH 1 301 1 HOH HOH A . H 5 HOH 2 302 5 HOH HOH A . H 5 HOH 3 303 6 HOH HOH A . H 5 HOH 4 304 7 HOH HOH A . H 5 HOH 5 305 8 HOH HOH A . H 5 HOH 6 306 9 HOH HOH A . H 5 HOH 7 307 10 HOH HOH A . H 5 HOH 8 308 11 HOH HOH A . H 5 HOH 9 309 13 HOH HOH A . H 5 HOH 10 310 15 HOH HOH A . H 5 HOH 11 311 16 HOH HOH A . H 5 HOH 12 312 17 HOH HOH A . H 5 HOH 13 313 19 HOH HOH A . H 5 HOH 14 314 20 HOH HOH A . H 5 HOH 15 315 22 HOH HOH A . H 5 HOH 16 316 24 HOH HOH A . H 5 HOH 17 317 25 HOH HOH A . H 5 HOH 18 318 26 HOH HOH A . H 5 HOH 19 319 28 HOH HOH A . H 5 HOH 20 320 29 HOH HOH A . H 5 HOH 21 321 30 HOH HOH A . H 5 HOH 22 322 31 HOH HOH A . H 5 HOH 23 323 32 HOH HOH A . H 5 HOH 24 324 33 HOH HOH A . H 5 HOH 25 325 34 HOH HOH A . H 5 HOH 26 326 38 HOH HOH A . H 5 HOH 27 327 39 HOH HOH A . H 5 HOH 28 328 41 HOH HOH A . H 5 HOH 29 329 44 HOH HOH A . H 5 HOH 30 330 45 HOH HOH A . H 5 HOH 31 331 46 HOH HOH A . H 5 HOH 32 332 47 HOH HOH A . H 5 HOH 33 333 48 HOH HOH A . H 5 HOH 34 334 49 HOH HOH A . H 5 HOH 35 335 51 HOH HOH A . H 5 HOH 36 336 52 HOH HOH A . H 5 HOH 37 337 53 HOH HOH A . H 5 HOH 38 338 54 HOH HOH A . H 5 HOH 39 339 2 HOH HOH A . H 5 HOH 40 340 3 HOH HOH A . H 5 HOH 41 341 4 HOH HOH A . H 5 HOH 42 342 56 HOH HOH A . H 5 HOH 43 343 57 HOH HOH A . H 5 HOH 44 344 58 HOH HOH A . H 5 HOH 45 345 59 HOH HOH A . H 5 HOH 46 346 60 HOH HOH A . H 5 HOH 47 347 61 HOH HOH A . H 5 HOH 48 348 62 HOH HOH A . H 5 HOH 49 349 64 HOH HOH A . H 5 HOH 50 350 65 HOH HOH A . H 5 HOH 51 351 66 HOH HOH A . H 5 HOH 52 352 67 HOH HOH A . H 5 HOH 53 353 68 HOH HOH A . H 5 HOH 54 354 69 HOH HOH A . H 5 HOH 55 355 70 HOH HOH A . H 5 HOH 56 356 73 HOH HOH A . H 5 HOH 57 357 74 HOH HOH A . H 5 HOH 58 358 75 HOH HOH A . H 5 HOH 59 359 76 HOH HOH A . H 5 HOH 60 360 77 HOH HOH A . H 5 HOH 61 361 78 HOH HOH A . H 5 HOH 62 362 79 HOH HOH A . H 5 HOH 63 363 80 HOH HOH A . H 5 HOH 64 364 81 HOH HOH A . H 5 HOH 65 365 82 HOH HOH A . H 5 HOH 66 366 83 HOH HOH A . H 5 HOH 67 367 84 HOH HOH A . H 5 HOH 68 368 86 HOH HOH A . H 5 HOH 69 369 87 HOH HOH A . H 5 HOH 70 370 88 HOH HOH A . H 5 HOH 71 371 89 HOH HOH A . H 5 HOH 72 372 90 HOH HOH A . H 5 HOH 73 373 91 HOH HOH A . H 5 HOH 74 374 92 HOH HOH A . H 5 HOH 75 375 94 HOH HOH A . H 5 HOH 76 376 96 HOH HOH A . H 5 HOH 77 377 97 HOH HOH A . H 5 HOH 78 378 98 HOH HOH A . H 5 HOH 79 379 99 HOH HOH A . H 5 HOH 80 380 100 HOH HOH A . H 5 HOH 81 381 103 HOH HOH A . H 5 HOH 82 382 104 HOH HOH A . H 5 HOH 83 383 105 HOH HOH A . H 5 HOH 84 384 106 HOH HOH A . H 5 HOH 85 385 107 HOH HOH A . H 5 HOH 86 386 108 HOH HOH A . H 5 HOH 87 387 109 HOH HOH A . H 5 HOH 88 388 110 HOH HOH A . H 5 HOH 89 389 111 HOH HOH A . H 5 HOH 90 390 112 HOH HOH A . H 5 HOH 91 391 113 HOH HOH A . H 5 HOH 92 392 114 HOH HOH A . H 5 HOH 93 393 115 HOH HOH A . H 5 HOH 94 394 116 HOH HOH A . H 5 HOH 95 395 120 HOH HOH A . H 5 HOH 96 396 123 HOH HOH A . H 5 HOH 97 397 124 HOH HOH A . I 5 HOH 1 101 14 HOH HOH B . I 5 HOH 2 102 35 HOH HOH B . I 5 HOH 3 103 36 HOH HOH B . I 5 HOH 4 104 42 HOH HOH B . I 5 HOH 5 105 50 HOH HOH B . I 5 HOH 6 106 63 HOH HOH B . I 5 HOH 7 107 71 HOH HOH B . I 5 HOH 8 108 93 HOH HOH B . I 5 HOH 9 109 95 HOH HOH B . I 5 HOH 10 110 117 HOH HOH B . I 5 HOH 11 111 121 HOH HOH B . I 5 HOH 12 112 122 HOH HOH B . J 5 HOH 1 101 12 HOH HOH C . J 5 HOH 2 102 18 HOH HOH C . J 5 HOH 3 103 21 HOH HOH C . J 5 HOH 4 104 23 HOH HOH C . J 5 HOH 5 105 27 HOH HOH C . J 5 HOH 6 106 37 HOH HOH C . J 5 HOH 7 107 40 HOH HOH C . J 5 HOH 8 108 43 HOH HOH C . J 5 HOH 9 109 55 HOH HOH C . J 5 HOH 10 110 72 HOH HOH C . J 5 HOH 11 111 85 HOH HOH C . J 5 HOH 12 112 101 HOH HOH C . J 5 HOH 13 113 102 HOH HOH C . J 5 HOH 14 114 118 HOH HOH C . J 5 HOH 15 115 119 HOH HOH C . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id C _pdbx_struct_mod_residue.label_comp_id PGN _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id C _pdbx_struct_mod_residue.auth_comp_id PGN _pdbx_struct_mod_residue.auth_seq_id 6 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details "2'-DEOXYGUANOSINE-3',5'-DIPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2670 ? 1 MORE -37 ? 1 'SSA (A^2)' 8580 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 A A ASP 17 ? A ASP 71 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OE2 ? A GLU 55 ? A GLU 109 ? 1_555 99.3 ? 2 OD1 A A ASP 17 ? A ASP 71 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OD1 ? A ASN 78 ? A ASN 132 ? 1_555 138.6 ? 3 OE2 ? A GLU 55 ? A GLU 109 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 OD1 ? A ASN 78 ? A ASN 132 ? 1_555 99.7 ? 4 OD1 A A ASP 17 ? A ASP 71 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 "O3'" ? B A 6 ? B A 6 ? 1_555 124.6 ? 5 OE2 ? A GLU 55 ? A GLU 109 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 "O3'" ? B A 6 ? B A 6 ? 1_555 95.2 ? 6 OD1 ? A ASN 78 ? A ASN 132 ? 1_555 MG ? D MG . ? A MG 201 ? 1_555 "O3'" ? B A 6 ? B A 6 ? 1_555 89.8 ? 7 OD2 A A ASP 17 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 OD2 ? A ASP 138 ? A ASP 192 ? 1_555 95.2 ? 8 OD2 A A ASP 17 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? H HOH . ? A HOH 366 ? 1_555 102.6 ? 9 OD2 ? A ASP 138 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? H HOH . ? A HOH 366 ? 1_555 82.6 ? 10 OD2 A A ASP 17 ? A ASP 71 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? H HOH . ? A HOH 383 ? 1_555 82.5 ? 11 OD2 ? A ASP 138 ? A ASP 192 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? H HOH . ? A HOH 383 ? 1_555 97.6 ? 12 O ? H HOH . ? A HOH 366 ? 1_555 MG ? E MG . ? A MG 202 ? 1_555 O ? H HOH . ? A HOH 383 ? 1_555 174.9 ? 13 O ? H HOH . ? A HOH 338 ? 1_555 MG ? F MG . ? A MG 203 ? 1_555 O ? H HOH . ? A HOH 356 ? 1_555 84.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-14 2 'Structure model' 1 1 2017-11-08 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_ref_seq_dif 9 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 3 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 24 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 3 'Structure model' '_struct_ref_seq_dif.details' 39 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 REFMAC refinement 5.5.0109 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 MG A MG 204 ? ? O A HOH 303 ? ? 1.70 2 1 O A HOH 317 ? ? O A HOH 389 ? ? 2.13 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CA A ALA 191 ? B C A ALA 191 ? ? 1.933 1.525 0.408 0.026 N 2 1 "O5'" B A 4 ? ? "C5'" B A 4 ? ? 1.359 1.420 -0.061 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ALA 191 ? B CA A ALA 191 ? B C A ALA 191 ? ? 130.82 110.10 20.72 1.50 N 2 1 "O3'" B U 1 ? ? P B C 2 ? ? "O5'" B C 2 ? ? 90.23 104.00 -13.77 1.90 Y 3 1 "O5'" B C 2 ? ? "C5'" B C 2 ? ? "C4'" B C 2 ? ? 101.22 109.40 -8.18 0.80 N 4 1 N1 B A 6 ? ? C2 B A 6 ? ? N3 B A 6 ? ? 126.01 129.30 -3.29 0.50 N 5 1 "O5'" C DT 2 ? ? P C DT 2 ? ? OP2 C DT 2 ? ? 99.10 105.70 -6.60 0.90 N 6 1 "O4'" C DT 4 ? ? "C1'" C DT 4 ? ? N1 C DT 4 ? ? 110.80 108.30 2.50 0.30 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 55 ? A GLY 1 2 1 Y 1 A SER 56 ? A SER 2 3 1 Y 1 A HIS 57 ? A HIS 3 4 1 Y 1 A MET 58 ? A MET 4 5 1 Y 1 A ALA 59 ? A ALA 5 6 1 Y 1 A LYS 60 ? A LYS 6 7 1 Y 1 A GLY 194 ? A GLY 140 8 1 Y 1 A ARG 195 ? A ARG 141 9 1 Y 1 A LYS 196 ? A LYS 142 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 DA OP3 O N N 146 DA P P N N 147 DA OP1 O N N 148 DA OP2 O N N 149 DA "O5'" O N N 150 DA "C5'" C N N 151 DA "C4'" C N R 152 DA "O4'" O N N 153 DA "C3'" C N S 154 DA "O3'" O N N 155 DA "C2'" C N N 156 DA "C1'" C N R 157 DA N9 N Y N 158 DA C8 C Y N 159 DA N7 N Y N 160 DA C5 C Y N 161 DA C6 C Y N 162 DA N6 N N N 163 DA N1 N Y N 164 DA C2 C Y N 165 DA N3 N Y N 166 DA C4 C Y N 167 DA HOP3 H N N 168 DA HOP2 H N N 169 DA "H5'" H N N 170 DA "H5''" H N N 171 DA "H4'" H N N 172 DA "H3'" H N N 173 DA "HO3'" H N N 174 DA "H2'" H N N 175 DA "H2''" H N N 176 DA "H1'" H N N 177 DA H8 H N N 178 DA H61 H N N 179 DA H62 H N N 180 DA H2 H N N 181 DC OP3 O N N 182 DC P P N N 183 DC OP1 O N N 184 DC OP2 O N N 185 DC "O5'" O N N 186 DC "C5'" C N N 187 DC "C4'" C N R 188 DC "O4'" O N N 189 DC "C3'" C N S 190 DC "O3'" O N N 191 DC "C2'" C N N 192 DC "C1'" C N R 193 DC N1 N N N 194 DC C2 C N N 195 DC O2 O N N 196 DC N3 N N N 197 DC C4 C N N 198 DC N4 N N N 199 DC C5 C N N 200 DC C6 C N N 201 DC HOP3 H N N 202 DC HOP2 H N N 203 DC "H5'" H N N 204 DC "H5''" H N N 205 DC "H4'" H N N 206 DC "H3'" H N N 207 DC "HO3'" H N N 208 DC "H2'" H N N 209 DC "H2''" H N N 210 DC "H1'" H N N 211 DC H41 H N N 212 DC H42 H N N 213 DC H5 H N N 214 DC H6 H N N 215 DG OP3 O N N 216 DG P P N N 217 DG OP1 O N N 218 DG OP2 O N N 219 DG "O5'" O N N 220 DG "C5'" C N N 221 DG "C4'" C N R 222 DG "O4'" O N N 223 DG "C3'" C N S 224 DG "O3'" O N N 225 DG "C2'" C N N 226 DG "C1'" C N R 227 DG N9 N Y N 228 DG C8 C Y N 229 DG N7 N Y N 230 DG C5 C Y N 231 DG C6 C N N 232 DG O6 O N N 233 DG N1 N N N 234 DG C2 C N N 235 DG N2 N N N 236 DG N3 N N N 237 DG C4 C Y N 238 DG HOP3 H N N 239 DG HOP2 H N N 240 DG "H5'" H N N 241 DG "H5''" H N N 242 DG "H4'" H N N 243 DG "H3'" H N N 244 DG "HO3'" H N N 245 DG "H2'" H N N 246 DG "H2''" H N N 247 DG "H1'" H N N 248 DG H8 H N N 249 DG H1 H N N 250 DG H21 H N N 251 DG H22 H N N 252 DT OP3 O N N 253 DT P P N N 254 DT OP1 O N N 255 DT OP2 O N N 256 DT "O5'" O N N 257 DT "C5'" C N N 258 DT "C4'" C N R 259 DT "O4'" O N N 260 DT "C3'" C N S 261 DT "O3'" O N N 262 DT "C2'" C N N 263 DT "C1'" C N R 264 DT N1 N N N 265 DT C2 C N N 266 DT O2 O N N 267 DT N3 N N N 268 DT C4 C N N 269 DT O4 O N N 270 DT C5 C N N 271 DT C7 C N N 272 DT C6 C N N 273 DT HOP3 H N N 274 DT HOP2 H N N 275 DT "H5'" H N N 276 DT "H5''" H N N 277 DT "H4'" H N N 278 DT "H3'" H N N 279 DT "HO3'" H N N 280 DT "H2'" H N N 281 DT "H2''" H N N 282 DT "H1'" H N N 283 DT H3 H N N 284 DT H71 H N N 285 DT H72 H N N 286 DT H73 H N N 287 DT H6 H N N 288 G OP3 O N N 289 G P P N N 290 G OP1 O N N 291 G OP2 O N N 292 G "O5'" O N N 293 G "C5'" C N N 294 G "C4'" C N R 295 G "O4'" O N N 296 G "C3'" C N S 297 G "O3'" O N N 298 G "C2'" C N R 299 G "O2'" O N N 300 G "C1'" C N R 301 G N9 N Y N 302 G C8 C Y N 303 G N7 N Y N 304 G C5 C Y N 305 G C6 C N N 306 G O6 O N N 307 G N1 N N N 308 G C2 C N N 309 G N2 N N N 310 G N3 N N N 311 G C4 C Y N 312 G HOP3 H N N 313 G HOP2 H N N 314 G "H5'" H N N 315 G "H5''" H N N 316 G "H4'" H N N 317 G "H3'" H N N 318 G "HO3'" H N N 319 G "H2'" H N N 320 G "HO2'" H N N 321 G "H1'" H N N 322 G H8 H N N 323 G H1 H N N 324 G H21 H N N 325 G H22 H N N 326 GLN N N N N 327 GLN CA C N S 328 GLN C C N N 329 GLN O O N N 330 GLN CB C N N 331 GLN CG C N N 332 GLN CD C N N 333 GLN OE1 O N N 334 GLN NE2 N N N 335 GLN OXT O N N 336 GLN H H N N 337 GLN H2 H N N 338 GLN HA H N N 339 GLN HB2 H N N 340 GLN HB3 H N N 341 GLN HG2 H N N 342 GLN HG3 H N N 343 GLN HE21 H N N 344 GLN HE22 H N N 345 GLN HXT H N N 346 GLU N N N N 347 GLU CA C N S 348 GLU C C N N 349 GLU O O N N 350 GLU CB C N N 351 GLU CG C N N 352 GLU CD C N N 353 GLU OE1 O N N 354 GLU OE2 O N N 355 GLU OXT O N N 356 GLU H H N N 357 GLU H2 H N N 358 GLU HA H N N 359 GLU HB2 H N N 360 GLU HB3 H N N 361 GLU HG2 H N N 362 GLU HG3 H N N 363 GLU HE2 H N N 364 GLU HXT H N N 365 GLY N N N N 366 GLY CA C N N 367 GLY C C N N 368 GLY O O N N 369 GLY OXT O N N 370 GLY H H N N 371 GLY H2 H N N 372 GLY HA2 H N N 373 GLY HA3 H N N 374 GLY HXT H N N 375 HIS N N N N 376 HIS CA C N S 377 HIS C C N N 378 HIS O O N N 379 HIS CB C N N 380 HIS CG C Y N 381 HIS ND1 N Y N 382 HIS CD2 C Y N 383 HIS CE1 C Y N 384 HIS NE2 N Y N 385 HIS OXT O N N 386 HIS H H N N 387 HIS H2 H N N 388 HIS HA H N N 389 HIS HB2 H N N 390 HIS HB3 H N N 391 HIS HD1 H N N 392 HIS HD2 H N N 393 HIS HE1 H N N 394 HIS HE2 H N N 395 HIS HXT H N N 396 HOH O O N N 397 HOH H1 H N N 398 HOH H2 H N N 399 ILE N N N N 400 ILE CA C N S 401 ILE C C N N 402 ILE O O N N 403 ILE CB C N S 404 ILE CG1 C N N 405 ILE CG2 C N N 406 ILE CD1 C N N 407 ILE OXT O N N 408 ILE H H N N 409 ILE H2 H N N 410 ILE HA H N N 411 ILE HB H N N 412 ILE HG12 H N N 413 ILE HG13 H N N 414 ILE HG21 H N N 415 ILE HG22 H N N 416 ILE HG23 H N N 417 ILE HD11 H N N 418 ILE HD12 H N N 419 ILE HD13 H N N 420 ILE HXT H N N 421 LEU N N N N 422 LEU CA C N S 423 LEU C C N N 424 LEU O O N N 425 LEU CB C N N 426 LEU CG C N N 427 LEU CD1 C N N 428 LEU CD2 C N N 429 LEU OXT O N N 430 LEU H H N N 431 LEU H2 H N N 432 LEU HA H N N 433 LEU HB2 H N N 434 LEU HB3 H N N 435 LEU HG H N N 436 LEU HD11 H N N 437 LEU HD12 H N N 438 LEU HD13 H N N 439 LEU HD21 H N N 440 LEU HD22 H N N 441 LEU HD23 H N N 442 LEU HXT H N N 443 LYS N N N N 444 LYS CA C N S 445 LYS C C N N 446 LYS O O N N 447 LYS CB C N N 448 LYS CG C N N 449 LYS CD C N N 450 LYS CE C N N 451 LYS NZ N N N 452 LYS OXT O N N 453 LYS H H N N 454 LYS H2 H N N 455 LYS HA H N N 456 LYS HB2 H N N 457 LYS HB3 H N N 458 LYS HG2 H N N 459 LYS HG3 H N N 460 LYS HD2 H N N 461 LYS HD3 H N N 462 LYS HE2 H N N 463 LYS HE3 H N N 464 LYS HZ1 H N N 465 LYS HZ2 H N N 466 LYS HZ3 H N N 467 LYS HXT H N N 468 MET N N N N 469 MET CA C N S 470 MET C C N N 471 MET O O N N 472 MET CB C N N 473 MET CG C N N 474 MET SD S N N 475 MET CE C N N 476 MET OXT O N N 477 MET H H N N 478 MET H2 H N N 479 MET HA H N N 480 MET HB2 H N N 481 MET HB3 H N N 482 MET HG2 H N N 483 MET HG3 H N N 484 MET HE1 H N N 485 MET HE2 H N N 486 MET HE3 H N N 487 MET HXT H N N 488 MG MG MG N N 489 PGN P1 P N N 490 PGN O4P O N N 491 PGN O5P O N N 492 PGN O6P O N N 493 PGN P P N N 494 PGN OP1 O N N 495 PGN OP2 O N N 496 PGN OP3 O N N 497 PGN "O5'" O N N 498 PGN "C5'" C N N 499 PGN "C4'" C N R 500 PGN "O4'" O N N 501 PGN "C3'" C N S 502 PGN "O3'" O N N 503 PGN "C2'" C N N 504 PGN "C1'" C N R 505 PGN N9 N Y N 506 PGN C8 C Y N 507 PGN N7 N Y N 508 PGN C5 C Y N 509 PGN C6 C N N 510 PGN O6 O N N 511 PGN N1 N N N 512 PGN C2 C N N 513 PGN N2 N N N 514 PGN N3 N N N 515 PGN C4 C Y N 516 PGN HOP5 H N N 517 PGN HOP6 H N N 518 PGN HOP2 H N N 519 PGN HOP3 H N N 520 PGN "H5'" H N N 521 PGN "H5''" H N N 522 PGN "H4'" H N N 523 PGN "H3'" H N N 524 PGN "H2'" H N N 525 PGN "H2''" H N N 526 PGN "H1'" H N N 527 PGN H8 H N N 528 PGN HN1 H N N 529 PGN HN21 H N N 530 PGN HN22 H N N 531 PHE N N N N 532 PHE CA C N S 533 PHE C C N N 534 PHE O O N N 535 PHE CB C N N 536 PHE CG C Y N 537 PHE CD1 C Y N 538 PHE CD2 C Y N 539 PHE CE1 C Y N 540 PHE CE2 C Y N 541 PHE CZ C Y N 542 PHE OXT O N N 543 PHE H H N N 544 PHE H2 H N N 545 PHE HA H N N 546 PHE HB2 H N N 547 PHE HB3 H N N 548 PHE HD1 H N N 549 PHE HD2 H N N 550 PHE HE1 H N N 551 PHE HE2 H N N 552 PHE HZ H N N 553 PHE HXT H N N 554 PRO N N N N 555 PRO CA C N S 556 PRO C C N N 557 PRO O O N N 558 PRO CB C N N 559 PRO CG C N N 560 PRO CD C N N 561 PRO OXT O N N 562 PRO H H N N 563 PRO HA H N N 564 PRO HB2 H N N 565 PRO HB3 H N N 566 PRO HG2 H N N 567 PRO HG3 H N N 568 PRO HD2 H N N 569 PRO HD3 H N N 570 PRO HXT H N N 571 SER N N N N 572 SER CA C N S 573 SER C C N N 574 SER O O N N 575 SER CB C N N 576 SER OG O N N 577 SER OXT O N N 578 SER H H N N 579 SER H2 H N N 580 SER HA H N N 581 SER HB2 H N N 582 SER HB3 H N N 583 SER HG H N N 584 SER HXT H N N 585 THR N N N N 586 THR CA C N S 587 THR C C N N 588 THR O O N N 589 THR CB C N R 590 THR OG1 O N N 591 THR CG2 C N N 592 THR OXT O N N 593 THR H H N N 594 THR H2 H N N 595 THR HA H N N 596 THR HB H N N 597 THR HG1 H N N 598 THR HG21 H N N 599 THR HG22 H N N 600 THR HG23 H N N 601 THR HXT H N N 602 TRP N N N N 603 TRP CA C N S 604 TRP C C N N 605 TRP O O N N 606 TRP CB C N N 607 TRP CG C Y N 608 TRP CD1 C Y N 609 TRP CD2 C Y N 610 TRP NE1 N Y N 611 TRP CE2 C Y N 612 TRP CE3 C Y N 613 TRP CZ2 C Y N 614 TRP CZ3 C Y N 615 TRP CH2 C Y N 616 TRP OXT O N N 617 TRP H H N N 618 TRP H2 H N N 619 TRP HA H N N 620 TRP HB2 H N N 621 TRP HB3 H N N 622 TRP HD1 H N N 623 TRP HE1 H N N 624 TRP HE3 H N N 625 TRP HZ2 H N N 626 TRP HZ3 H N N 627 TRP HH2 H N N 628 TRP HXT H N N 629 TYR N N N N 630 TYR CA C N S 631 TYR C C N N 632 TYR O O N N 633 TYR CB C N N 634 TYR CG C Y N 635 TYR CD1 C Y N 636 TYR CD2 C Y N 637 TYR CE1 C Y N 638 TYR CE2 C Y N 639 TYR CZ C Y N 640 TYR OH O N N 641 TYR OXT O N N 642 TYR H H N N 643 TYR H2 H N N 644 TYR HA H N N 645 TYR HB2 H N N 646 TYR HB3 H N N 647 TYR HD1 H N N 648 TYR HD2 H N N 649 TYR HE1 H N N 650 TYR HE2 H N N 651 TYR HH H N N 652 TYR HXT H N N 653 U OP3 O N N 654 U P P N N 655 U OP1 O N N 656 U OP2 O N N 657 U "O5'" O N N 658 U "C5'" C N N 659 U "C4'" C N R 660 U "O4'" O N N 661 U "C3'" C N S 662 U "O3'" O N N 663 U "C2'" C N R 664 U "O2'" O N N 665 U "C1'" C N R 666 U N1 N N N 667 U C2 C N N 668 U O2 O N N 669 U N3 N N N 670 U C4 C N N 671 U O4 O N N 672 U C5 C N N 673 U C6 C N N 674 U HOP3 H N N 675 U HOP2 H N N 676 U "H5'" H N N 677 U "H5''" H N N 678 U "H4'" H N N 679 U "H3'" H N N 680 U "HO3'" H N N 681 U "H2'" H N N 682 U "HO2'" H N N 683 U "H1'" H N N 684 U H3 H N N 685 U H5 H N N 686 U H6 H N N 687 VAL N N N N 688 VAL CA C N S 689 VAL C C N N 690 VAL O O N N 691 VAL CB C N N 692 VAL CG1 C N N 693 VAL CG2 C N N 694 VAL OXT O N N 695 VAL H H N N 696 VAL H2 H N N 697 VAL HA H N N 698 VAL HB H N N 699 VAL HG11 H N N 700 VAL HG12 H N N 701 VAL HG13 H N N 702 VAL HG21 H N N 703 VAL HG22 H N N 704 VAL HG23 H N N 705 VAL HXT H N N 706 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 DA OP3 P sing N N 145 DA OP3 HOP3 sing N N 146 DA P OP1 doub N N 147 DA P OP2 sing N N 148 DA P "O5'" sing N N 149 DA OP2 HOP2 sing N N 150 DA "O5'" "C5'" sing N N 151 DA "C5'" "C4'" sing N N 152 DA "C5'" "H5'" sing N N 153 DA "C5'" "H5''" sing N N 154 DA "C4'" "O4'" sing N N 155 DA "C4'" "C3'" sing N N 156 DA "C4'" "H4'" sing N N 157 DA "O4'" "C1'" sing N N 158 DA "C3'" "O3'" sing N N 159 DA "C3'" "C2'" sing N N 160 DA "C3'" "H3'" sing N N 161 DA "O3'" "HO3'" sing N N 162 DA "C2'" "C1'" sing N N 163 DA "C2'" "H2'" sing N N 164 DA "C2'" "H2''" sing N N 165 DA "C1'" N9 sing N N 166 DA "C1'" "H1'" sing N N 167 DA N9 C8 sing Y N 168 DA N9 C4 sing Y N 169 DA C8 N7 doub Y N 170 DA C8 H8 sing N N 171 DA N7 C5 sing Y N 172 DA C5 C6 sing Y N 173 DA C5 C4 doub Y N 174 DA C6 N6 sing N N 175 DA C6 N1 doub Y N 176 DA N6 H61 sing N N 177 DA N6 H62 sing N N 178 DA N1 C2 sing Y N 179 DA C2 N3 doub Y N 180 DA C2 H2 sing N N 181 DA N3 C4 sing Y N 182 DC OP3 P sing N N 183 DC OP3 HOP3 sing N N 184 DC P OP1 doub N N 185 DC P OP2 sing N N 186 DC P "O5'" sing N N 187 DC OP2 HOP2 sing N N 188 DC "O5'" "C5'" sing N N 189 DC "C5'" "C4'" sing N N 190 DC "C5'" "H5'" sing N N 191 DC "C5'" "H5''" sing N N 192 DC "C4'" "O4'" sing N N 193 DC "C4'" "C3'" sing N N 194 DC "C4'" "H4'" sing N N 195 DC "O4'" "C1'" sing N N 196 DC "C3'" "O3'" sing N N 197 DC "C3'" "C2'" sing N N 198 DC "C3'" "H3'" sing N N 199 DC "O3'" "HO3'" sing N N 200 DC "C2'" "C1'" sing N N 201 DC "C2'" "H2'" sing N N 202 DC "C2'" "H2''" sing N N 203 DC "C1'" N1 sing N N 204 DC "C1'" "H1'" sing N N 205 DC N1 C2 sing N N 206 DC N1 C6 sing N N 207 DC C2 O2 doub N N 208 DC C2 N3 sing N N 209 DC N3 C4 doub N N 210 DC C4 N4 sing N N 211 DC C4 C5 sing N N 212 DC N4 H41 sing N N 213 DC N4 H42 sing N N 214 DC C5 C6 doub N N 215 DC C5 H5 sing N N 216 DC C6 H6 sing N N 217 DG OP3 P sing N N 218 DG OP3 HOP3 sing N N 219 DG P OP1 doub N N 220 DG P OP2 sing N N 221 DG P "O5'" sing N N 222 DG OP2 HOP2 sing N N 223 DG "O5'" "C5'" sing N N 224 DG "C5'" "C4'" sing N N 225 DG "C5'" "H5'" sing N N 226 DG "C5'" "H5''" sing N N 227 DG "C4'" "O4'" sing N N 228 DG "C4'" "C3'" sing N N 229 DG "C4'" "H4'" sing N N 230 DG "O4'" "C1'" sing N N 231 DG "C3'" "O3'" sing N N 232 DG "C3'" "C2'" sing N N 233 DG "C3'" "H3'" sing N N 234 DG "O3'" "HO3'" sing N N 235 DG "C2'" "C1'" sing N N 236 DG "C2'" "H2'" sing N N 237 DG "C2'" "H2''" sing N N 238 DG "C1'" N9 sing N N 239 DG "C1'" "H1'" sing N N 240 DG N9 C8 sing Y N 241 DG N9 C4 sing Y N 242 DG C8 N7 doub Y N 243 DG C8 H8 sing N N 244 DG N7 C5 sing Y N 245 DG C5 C6 sing N N 246 DG C5 C4 doub Y N 247 DG C6 O6 doub N N 248 DG C6 N1 sing N N 249 DG N1 C2 sing N N 250 DG N1 H1 sing N N 251 DG C2 N2 sing N N 252 DG C2 N3 doub N N 253 DG N2 H21 sing N N 254 DG N2 H22 sing N N 255 DG N3 C4 sing N N 256 DT OP3 P sing N N 257 DT OP3 HOP3 sing N N 258 DT P OP1 doub N N 259 DT P OP2 sing N N 260 DT P "O5'" sing N N 261 DT OP2 HOP2 sing N N 262 DT "O5'" "C5'" sing N N 263 DT "C5'" "C4'" sing N N 264 DT "C5'" "H5'" sing N N 265 DT "C5'" "H5''" sing N N 266 DT "C4'" "O4'" sing N N 267 DT "C4'" "C3'" sing N N 268 DT "C4'" "H4'" sing N N 269 DT "O4'" "C1'" sing N N 270 DT "C3'" "O3'" sing N N 271 DT "C3'" "C2'" sing N N 272 DT "C3'" "H3'" sing N N 273 DT "O3'" "HO3'" sing N N 274 DT "C2'" "C1'" sing N N 275 DT "C2'" "H2'" sing N N 276 DT "C2'" "H2''" sing N N 277 DT "C1'" N1 sing N N 278 DT "C1'" "H1'" sing N N 279 DT N1 C2 sing N N 280 DT N1 C6 sing N N 281 DT C2 O2 doub N N 282 DT C2 N3 sing N N 283 DT N3 C4 sing N N 284 DT N3 H3 sing N N 285 DT C4 O4 doub N N 286 DT C4 C5 sing N N 287 DT C5 C7 sing N N 288 DT C5 C6 doub N N 289 DT C7 H71 sing N N 290 DT C7 H72 sing N N 291 DT C7 H73 sing N N 292 DT C6 H6 sing N N 293 G OP3 P sing N N 294 G OP3 HOP3 sing N N 295 G P OP1 doub N N 296 G P OP2 sing N N 297 G P "O5'" sing N N 298 G OP2 HOP2 sing N N 299 G "O5'" "C5'" sing N N 300 G "C5'" "C4'" sing N N 301 G "C5'" "H5'" sing N N 302 G "C5'" "H5''" sing N N 303 G "C4'" "O4'" sing N N 304 G "C4'" "C3'" sing N N 305 G "C4'" "H4'" sing N N 306 G "O4'" "C1'" sing N N 307 G "C3'" "O3'" sing N N 308 G "C3'" "C2'" sing N N 309 G "C3'" "H3'" sing N N 310 G "O3'" "HO3'" sing N N 311 G "C2'" "O2'" sing N N 312 G "C2'" "C1'" sing N N 313 G "C2'" "H2'" sing N N 314 G "O2'" "HO2'" sing N N 315 G "C1'" N9 sing N N 316 G "C1'" "H1'" sing N N 317 G N9 C8 sing Y N 318 G N9 C4 sing Y N 319 G C8 N7 doub Y N 320 G C8 H8 sing N N 321 G N7 C5 sing Y N 322 G C5 C6 sing N N 323 G C5 C4 doub Y N 324 G C6 O6 doub N N 325 G C6 N1 sing N N 326 G N1 C2 sing N N 327 G N1 H1 sing N N 328 G C2 N2 sing N N 329 G C2 N3 doub N N 330 G N2 H21 sing N N 331 G N2 H22 sing N N 332 G N3 C4 sing N N 333 GLN N CA sing N N 334 GLN N H sing N N 335 GLN N H2 sing N N 336 GLN CA C sing N N 337 GLN CA CB sing N N 338 GLN CA HA sing N N 339 GLN C O doub N N 340 GLN C OXT sing N N 341 GLN CB CG sing N N 342 GLN CB HB2 sing N N 343 GLN CB HB3 sing N N 344 GLN CG CD sing N N 345 GLN CG HG2 sing N N 346 GLN CG HG3 sing N N 347 GLN CD OE1 doub N N 348 GLN CD NE2 sing N N 349 GLN NE2 HE21 sing N N 350 GLN NE2 HE22 sing N N 351 GLN OXT HXT sing N N 352 GLU N CA sing N N 353 GLU N H sing N N 354 GLU N H2 sing N N 355 GLU CA C sing N N 356 GLU CA CB sing N N 357 GLU CA HA sing N N 358 GLU C O doub N N 359 GLU C OXT sing N N 360 GLU CB CG sing N N 361 GLU CB HB2 sing N N 362 GLU CB HB3 sing N N 363 GLU CG CD sing N N 364 GLU CG HG2 sing N N 365 GLU CG HG3 sing N N 366 GLU CD OE1 doub N N 367 GLU CD OE2 sing N N 368 GLU OE2 HE2 sing N N 369 GLU OXT HXT sing N N 370 GLY N CA sing N N 371 GLY N H sing N N 372 GLY N H2 sing N N 373 GLY CA C sing N N 374 GLY CA HA2 sing N N 375 GLY CA HA3 sing N N 376 GLY C O doub N N 377 GLY C OXT sing N N 378 GLY OXT HXT sing N N 379 HIS N CA sing N N 380 HIS N H sing N N 381 HIS N H2 sing N N 382 HIS CA C sing N N 383 HIS CA CB sing N N 384 HIS CA HA sing N N 385 HIS C O doub N N 386 HIS C OXT sing N N 387 HIS CB CG sing N N 388 HIS CB HB2 sing N N 389 HIS CB HB3 sing N N 390 HIS CG ND1 sing Y N 391 HIS CG CD2 doub Y N 392 HIS ND1 CE1 doub Y N 393 HIS ND1 HD1 sing N N 394 HIS CD2 NE2 sing Y N 395 HIS CD2 HD2 sing N N 396 HIS CE1 NE2 sing Y N 397 HIS CE1 HE1 sing N N 398 HIS NE2 HE2 sing N N 399 HIS OXT HXT sing N N 400 HOH O H1 sing N N 401 HOH O H2 sing N N 402 ILE N CA sing N N 403 ILE N H sing N N 404 ILE N H2 sing N N 405 ILE CA C sing N N 406 ILE CA CB sing N N 407 ILE CA HA sing N N 408 ILE C O doub N N 409 ILE C OXT sing N N 410 ILE CB CG1 sing N N 411 ILE CB CG2 sing N N 412 ILE CB HB sing N N 413 ILE CG1 CD1 sing N N 414 ILE CG1 HG12 sing N N 415 ILE CG1 HG13 sing N N 416 ILE CG2 HG21 sing N N 417 ILE CG2 HG22 sing N N 418 ILE CG2 HG23 sing N N 419 ILE CD1 HD11 sing N N 420 ILE CD1 HD12 sing N N 421 ILE CD1 HD13 sing N N 422 ILE OXT HXT sing N N 423 LEU N CA sing N N 424 LEU N H sing N N 425 LEU N H2 sing N N 426 LEU CA C sing N N 427 LEU CA CB sing N N 428 LEU CA HA sing N N 429 LEU C O doub N N 430 LEU C OXT sing N N 431 LEU CB CG sing N N 432 LEU CB HB2 sing N N 433 LEU CB HB3 sing N N 434 LEU CG CD1 sing N N 435 LEU CG CD2 sing N N 436 LEU CG HG sing N N 437 LEU CD1 HD11 sing N N 438 LEU CD1 HD12 sing N N 439 LEU CD1 HD13 sing N N 440 LEU CD2 HD21 sing N N 441 LEU CD2 HD22 sing N N 442 LEU CD2 HD23 sing N N 443 LEU OXT HXT sing N N 444 LYS N CA sing N N 445 LYS N H sing N N 446 LYS N H2 sing N N 447 LYS CA C sing N N 448 LYS CA CB sing N N 449 LYS CA HA sing N N 450 LYS C O doub N N 451 LYS C OXT sing N N 452 LYS CB CG sing N N 453 LYS CB HB2 sing N N 454 LYS CB HB3 sing N N 455 LYS CG CD sing N N 456 LYS CG HG2 sing N N 457 LYS CG HG3 sing N N 458 LYS CD CE sing N N 459 LYS CD HD2 sing N N 460 LYS CD HD3 sing N N 461 LYS CE NZ sing N N 462 LYS CE HE2 sing N N 463 LYS CE HE3 sing N N 464 LYS NZ HZ1 sing N N 465 LYS NZ HZ2 sing N N 466 LYS NZ HZ3 sing N N 467 LYS OXT HXT sing N N 468 MET N CA sing N N 469 MET N H sing N N 470 MET N H2 sing N N 471 MET CA C sing N N 472 MET CA CB sing N N 473 MET CA HA sing N N 474 MET C O doub N N 475 MET C OXT sing N N 476 MET CB CG sing N N 477 MET CB HB2 sing N N 478 MET CB HB3 sing N N 479 MET CG SD sing N N 480 MET CG HG2 sing N N 481 MET CG HG3 sing N N 482 MET SD CE sing N N 483 MET CE HE1 sing N N 484 MET CE HE2 sing N N 485 MET CE HE3 sing N N 486 MET OXT HXT sing N N 487 PGN P1 O4P doub N N 488 PGN P1 O5P sing N N 489 PGN P1 O6P sing N N 490 PGN P1 "O3'" sing N N 491 PGN O5P HOP5 sing N N 492 PGN O6P HOP6 sing N N 493 PGN P OP1 doub N N 494 PGN P OP2 sing N N 495 PGN P OP3 sing N N 496 PGN P "O5'" sing N N 497 PGN OP2 HOP2 sing N N 498 PGN OP3 HOP3 sing N N 499 PGN "O5'" "C5'" sing N N 500 PGN "C5'" "C4'" sing N N 501 PGN "C5'" "H5'" sing N N 502 PGN "C5'" "H5''" sing N N 503 PGN "C4'" "O4'" sing N N 504 PGN "C4'" "C3'" sing N N 505 PGN "C4'" "H4'" sing N N 506 PGN "O4'" "C1'" sing N N 507 PGN "C3'" "O3'" sing N N 508 PGN "C3'" "C2'" sing N N 509 PGN "C3'" "H3'" sing N N 510 PGN "C2'" "C1'" sing N N 511 PGN "C2'" "H2'" sing N N 512 PGN "C2'" "H2''" sing N N 513 PGN "C1'" N9 sing N N 514 PGN "C1'" "H1'" sing N N 515 PGN N9 C8 sing Y N 516 PGN N9 C4 sing Y N 517 PGN C8 N7 doub Y N 518 PGN C8 H8 sing N N 519 PGN N7 C5 sing Y N 520 PGN C5 C6 sing N N 521 PGN C5 C4 doub Y N 522 PGN C6 O6 doub N N 523 PGN C6 N1 sing N N 524 PGN N1 C2 sing N N 525 PGN N1 HN1 sing N N 526 PGN C2 N2 sing N N 527 PGN C2 N3 doub N N 528 PGN N2 HN21 sing N N 529 PGN N2 HN22 sing N N 530 PGN N3 C4 sing N N 531 PHE N CA sing N N 532 PHE N H sing N N 533 PHE N H2 sing N N 534 PHE CA C sing N N 535 PHE CA CB sing N N 536 PHE CA HA sing N N 537 PHE C O doub N N 538 PHE C OXT sing N N 539 PHE CB CG sing N N 540 PHE CB HB2 sing N N 541 PHE CB HB3 sing N N 542 PHE CG CD1 doub Y N 543 PHE CG CD2 sing Y N 544 PHE CD1 CE1 sing Y N 545 PHE CD1 HD1 sing N N 546 PHE CD2 CE2 doub Y N 547 PHE CD2 HD2 sing N N 548 PHE CE1 CZ doub Y N 549 PHE CE1 HE1 sing N N 550 PHE CE2 CZ sing Y N 551 PHE CE2 HE2 sing N N 552 PHE CZ HZ sing N N 553 PHE OXT HXT sing N N 554 PRO N CA sing N N 555 PRO N CD sing N N 556 PRO N H sing N N 557 PRO CA C sing N N 558 PRO CA CB sing N N 559 PRO CA HA sing N N 560 PRO C O doub N N 561 PRO C OXT sing N N 562 PRO CB CG sing N N 563 PRO CB HB2 sing N N 564 PRO CB HB3 sing N N 565 PRO CG CD sing N N 566 PRO CG HG2 sing N N 567 PRO CG HG3 sing N N 568 PRO CD HD2 sing N N 569 PRO CD HD3 sing N N 570 PRO OXT HXT sing N N 571 SER N CA sing N N 572 SER N H sing N N 573 SER N H2 sing N N 574 SER CA C sing N N 575 SER CA CB sing N N 576 SER CA HA sing N N 577 SER C O doub N N 578 SER C OXT sing N N 579 SER CB OG sing N N 580 SER CB HB2 sing N N 581 SER CB HB3 sing N N 582 SER OG HG sing N N 583 SER OXT HXT sing N N 584 THR N CA sing N N 585 THR N H sing N N 586 THR N H2 sing N N 587 THR CA C sing N N 588 THR CA CB sing N N 589 THR CA HA sing N N 590 THR C O doub N N 591 THR C OXT sing N N 592 THR CB OG1 sing N N 593 THR CB CG2 sing N N 594 THR CB HB sing N N 595 THR OG1 HG1 sing N N 596 THR CG2 HG21 sing N N 597 THR CG2 HG22 sing N N 598 THR CG2 HG23 sing N N 599 THR OXT HXT sing N N 600 TRP N CA sing N N 601 TRP N H sing N N 602 TRP N H2 sing N N 603 TRP CA C sing N N 604 TRP CA CB sing N N 605 TRP CA HA sing N N 606 TRP C O doub N N 607 TRP C OXT sing N N 608 TRP CB CG sing N N 609 TRP CB HB2 sing N N 610 TRP CB HB3 sing N N 611 TRP CG CD1 doub Y N 612 TRP CG CD2 sing Y N 613 TRP CD1 NE1 sing Y N 614 TRP CD1 HD1 sing N N 615 TRP CD2 CE2 doub Y N 616 TRP CD2 CE3 sing Y N 617 TRP NE1 CE2 sing Y N 618 TRP NE1 HE1 sing N N 619 TRP CE2 CZ2 sing Y N 620 TRP CE3 CZ3 doub Y N 621 TRP CE3 HE3 sing N N 622 TRP CZ2 CH2 doub Y N 623 TRP CZ2 HZ2 sing N N 624 TRP CZ3 CH2 sing Y N 625 TRP CZ3 HZ3 sing N N 626 TRP CH2 HH2 sing N N 627 TRP OXT HXT sing N N 628 TYR N CA sing N N 629 TYR N H sing N N 630 TYR N H2 sing N N 631 TYR CA C sing N N 632 TYR CA CB sing N N 633 TYR CA HA sing N N 634 TYR C O doub N N 635 TYR C OXT sing N N 636 TYR CB CG sing N N 637 TYR CB HB2 sing N N 638 TYR CB HB3 sing N N 639 TYR CG CD1 doub Y N 640 TYR CG CD2 sing Y N 641 TYR CD1 CE1 sing Y N 642 TYR CD1 HD1 sing N N 643 TYR CD2 CE2 doub Y N 644 TYR CD2 HD2 sing N N 645 TYR CE1 CZ doub Y N 646 TYR CE1 HE1 sing N N 647 TYR CE2 CZ sing Y N 648 TYR CE2 HE2 sing N N 649 TYR CZ OH sing N N 650 TYR OH HH sing N N 651 TYR OXT HXT sing N N 652 U OP3 P sing N N 653 U OP3 HOP3 sing N N 654 U P OP1 doub N N 655 U P OP2 sing N N 656 U P "O5'" sing N N 657 U OP2 HOP2 sing N N 658 U "O5'" "C5'" sing N N 659 U "C5'" "C4'" sing N N 660 U "C5'" "H5'" sing N N 661 U "C5'" "H5''" sing N N 662 U "C4'" "O4'" sing N N 663 U "C4'" "C3'" sing N N 664 U "C4'" "H4'" sing N N 665 U "O4'" "C1'" sing N N 666 U "C3'" "O3'" sing N N 667 U "C3'" "C2'" sing N N 668 U "C3'" "H3'" sing N N 669 U "O3'" "HO3'" sing N N 670 U "C2'" "O2'" sing N N 671 U "C2'" "C1'" sing N N 672 U "C2'" "H2'" sing N N 673 U "O2'" "HO2'" sing N N 674 U "C1'" N1 sing N N 675 U "C1'" "H1'" sing N N 676 U N1 C2 sing N N 677 U N1 C6 sing N N 678 U C2 O2 doub N N 679 U C2 N3 sing N N 680 U N3 C4 sing N N 681 U N3 H3 sing N N 682 U C4 O4 doub N N 683 U C4 C5 sing N N 684 U C5 C6 doub N N 685 U C5 H5 sing N N 686 U C6 H6 sing N N 687 VAL N CA sing N N 688 VAL N H sing N N 689 VAL N H2 sing N N 690 VAL CA C sing N N 691 VAL CA CB sing N N 692 VAL CA HA sing N N 693 VAL C O doub N N 694 VAL C OXT sing N N 695 VAL CB CG1 sing N N 696 VAL CB CG2 sing N N 697 VAL CB HB sing N N 698 VAL CG1 HG11 sing N N 699 VAL CG1 HG12 sing N N 700 VAL CG1 HG13 sing N N 701 VAL CG2 HG21 sing N N 702 VAL CG2 HG22 sing N N 703 VAL CG2 HG23 sing N N 704 VAL OXT HXT sing N N 705 # _ndb_struct_conf_na.entry_id 3ULD _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B C 2 1_555 C PGN 6 1_555 0.149 -0.177 0.048 -2.336 -6.846 -2.330 1 B_C2:PGN6_C B 2 ? C 6 ? 19 1 1 B G 3 1_555 C DC 5 1_555 -0.186 -0.132 -0.390 -16.437 -11.742 0.967 2 B_G3:DC5_C B 3 ? C 5 ? 19 1 1 B A 4 1_555 C DT 4 1_555 0.076 -0.156 -0.137 -11.458 -13.677 2.550 3 B_A4:DT4_C B 4 ? C 4 ? 20 1 1 B C 5 1_555 C DG 3 1_555 0.212 -0.227 0.208 -7.507 -8.621 -0.779 4 B_C5:DG3_C B 5 ? C 3 ? 19 1 1 B A 6 1_555 C DT 2 1_555 0.021 -0.125 -0.296 -12.050 -9.571 0.696 5 B_A6:DT2_C B 6 ? C 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B C 2 1_555 C PGN 6 1_555 B G 3 1_555 C DC 5 1_555 0.489 -1.138 3.627 5.854 7.253 36.251 -2.815 0.077 3.381 11.425 -9.223 37.392 1 BB_C2G3:DC5PGN6_CC B 2 ? C 6 ? B 3 ? C 5 ? 1 B G 3 1_555 C DC 5 1_555 B A 4 1_555 C DT 4 1_555 0.684 -1.371 3.257 0.981 5.812 33.690 -3.218 -1.015 3.003 9.933 -1.676 34.187 2 BB_G3A4:DT4DC5_CC B 3 ? C 5 ? B 4 ? C 4 ? 1 B A 4 1_555 C DT 4 1_555 B C 5 1_555 C DG 3 1_555 -0.733 -1.425 3.226 -1.937 3.915 28.733 -3.670 1.051 3.051 7.832 3.876 29.056 3 BB_A4C5:DG3DT4_CC B 4 ? C 4 ? B 5 ? C 3 ? 1 B C 5 1_555 C DG 3 1_555 B A 6 1_555 C DT 2 1_555 1.025 -1.970 3.402 8.824 6.325 24.835 -5.848 0.097 3.002 13.889 -19.377 27.070 4 BB_C5A6:DT2DG3_CC B 5 ? C 3 ? B 6 ? C 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3TWH _pdbx_initial_refinement_model.details 'PDB entry 3TWH' #