HEADER TRANSFERASE/TRANSFERASE INHIBITOR 16-NOV-11 3UO6 TITLE AURORA A IN COMPLEX WITH YL5-083 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AURORA KINASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN RESIDUES 123-401; COMPND 5 SYNONYM: AURORA 2, AURORA/IPL1-RELATED KINASE 1, ARK-1, AURORA- COMPND 6 RELATED KINASE 1, HARK1, BREAST TUMOR-AMPLIFIED KINASE, COMPND 7 SERINE/THREONINE-PROTEIN KINASE 15, SERINE/THREONINE-PROTEIN KINASE COMPND 8 6, SERINE/THREONINE-PROTEIN KINASE AURORA-A; COMPND 9 EC: 2.7.11.1; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AURKA, AIK, AIRK1, ARK1, AURA, AYK1, BTAK, IAK1, STK15, STK6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-MBP KEYWDS PROTEIN KINASE, AURORA A, INHIBITOR, DFG-OUT, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.P.MARTIN,J.-Y.ZHU,E.SCHONBRUNN REVDAT 3 13-SEP-23 3UO6 1 REMARK SEQADV REVDAT 2 02-MAY-12 3UO6 1 JRNL REVDAT 1 25-JAN-12 3UO6 0 JRNL AUTH M.P.MARTIN,J.Y.ZHU,H.R.LAWRENCE,R.PIREDDU,Y.LUO,R.ALAM, JRNL AUTH 2 S.OZCAN,S.M.SEBTI,N.J.LAWRENCE,E.SCHONBRUNN JRNL TITL A NOVEL MECHANISM BY WHICH SMALL MOLECULE INHIBITORS INDUCE JRNL TITL 2 THE DFG FLIP IN AURORA A. JRNL REF ACS CHEM.BIOL. V. 7 698 2012 JRNL REFN ISSN 1554-8929 JRNL PMID 22248356 JRNL DOI 10.1021/CB200508B REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 15345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.8897 - 4.4307 0.99 3648 153 0.1859 0.2098 REMARK 3 2 4.4307 - 3.5242 0.99 3709 154 0.2008 0.2641 REMARK 3 3 3.5242 - 3.0809 1.00 3660 153 0.2708 0.3259 REMARK 3 4 3.0809 - 2.8002 1.00 3714 154 0.3494 0.4199 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 42.72 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90910 REMARK 3 B22 (A**2) : 0.90910 REMARK 3 B33 (A**2) : -1.81830 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4512 REMARK 3 ANGLE : 1.462 6090 REMARK 3 CHIRALITY : 0.089 644 REMARK 3 PLANARITY : 0.007 780 REMARK 3 DIHEDRAL : 20.840 1714 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 126:389 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 126:389 ) REMARK 3 ATOM PAIRS NUMBER : 2170 REMARK 3 RMSD : 0.112 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068999. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15369 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 31.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37400 REMARK 200 R SYM FOR SHELL (I) : 0.31500 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3UNZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML AURORA A PROTEIN, 1 MM YL5 REMARK 280 -083, 10 % (V/V) PEG 3350, 25 MM PHOSPHATE(NA/K PH 7.4), 5 % REMARK 280 TACISMATE PH 7.0 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K, REMARK 280 PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.10000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 123 REMARK 465 LYS A 124 REMARK 465 LYS A 125 REMARK 465 PRO A 390 REMARK 465 SER A 391 REMARK 465 ASN A 392 REMARK 465 CYS A 393 REMARK 465 GLN A 394 REMARK 465 ASN A 395 REMARK 465 LYS A 396 REMARK 465 GLU A 397 REMARK 465 SER A 398 REMARK 465 ALA A 399 REMARK 465 SER A 400 REMARK 465 LYS A 401 REMARK 465 SER B 123 REMARK 465 LYS B 124 REMARK 465 LYS B 125 REMARK 465 PRO B 390 REMARK 465 SER B 391 REMARK 465 ASN B 392 REMARK 465 CYS B 393 REMARK 465 GLN B 394 REMARK 465 ASN B 395 REMARK 465 LYS B 396 REMARK 465 GLU B 397 REMARK 465 SER B 398 REMARK 465 ALA B 399 REMARK 465 SER B 400 REMARK 465 LYS B 401 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 188 CG LEU A 188 CD1 -0.223 REMARK 500 LEU A 188 CG LEU A 188 CD2 -0.224 REMARK 500 ASN A 192 CG ASN A 192 OD1 -0.132 REMARK 500 ASN A 192 CG ASN A 192 ND2 -0.164 REMARK 500 GLU B 131 CB GLU B 131 CG -0.122 REMARK 500 LEU B 188 CG LEU B 188 CD2 -0.228 REMARK 500 ASN B 192 CG ASN B 192 ND2 -0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 153 CD - CE - NZ ANGL. DEV. = 17.6 DEGREES REMARK 500 LEU A 188 CD1 - CG - CD2 ANGL. DEV. = -27.6 DEGREES REMARK 500 LYS B 153 CD - CE - NZ ANGL. DEV. = 18.5 DEGREES REMARK 500 LEU B 188 CD1 - CG - CD2 ANGL. DEV. = -27.5 DEGREES REMARK 500 ARG B 285 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 286 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 LEU B 289 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 166 -19.14 74.77 REMARK 500 ALA A 172 -9.66 -57.86 REMARK 500 GLU A 175 -61.52 -132.87 REMARK 500 ASP A 202 -78.09 -108.35 REMARK 500 ALA A 203 -66.62 -136.16 REMARK 500 SER A 226 -23.10 75.09 REMARK 500 HIS A 254 72.76 44.35 REMARK 500 ALA A 267 -79.40 -107.04 REMARK 500 ALA A 273 -63.22 -92.08 REMARK 500 ASP A 274 -136.40 55.79 REMARK 500 PHE A 275 -117.73 58.35 REMARK 500 SER A 283 164.84 175.42 REMARK 500 SER A 284 -149.13 46.58 REMARK 500 ARG A 285 -63.53 -174.44 REMARK 500 ARG A 286 -104.93 47.73 REMARK 500 THR A 288 -79.79 -102.01 REMARK 500 CYS A 290 -17.98 76.96 REMARK 500 THR A 292 -72.68 -74.35 REMARK 500 LYS B 166 -18.84 74.07 REMARK 500 ALA B 172 -9.37 -58.03 REMARK 500 GLU B 175 -62.15 -133.51 REMARK 500 ASP B 202 -78.14 -108.82 REMARK 500 ALA B 203 -66.53 -135.94 REMARK 500 SER B 226 -23.17 75.20 REMARK 500 HIS B 254 73.02 44.24 REMARK 500 ALA B 267 -79.47 -107.08 REMARK 500 ALA B 273 -63.27 -92.34 REMARK 500 ASP B 274 -136.72 55.70 REMARK 500 PHE B 275 -118.35 58.91 REMARK 500 SER B 283 166.21 178.78 REMARK 500 SER B 284 -114.70 46.37 REMARK 500 ARG B 285 -25.12 121.04 REMARK 500 ARG B 286 -72.33 -30.11 REMARK 500 THR B 288 -80.31 -100.89 REMARK 500 CYS B 290 -18.28 75.50 REMARK 500 THR B 292 -73.35 -74.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 277 SER A 278 -138.59 REMARK 500 SER A 284 ARG A 285 148.18 REMARK 500 ARG A 285 ARG A 286 146.31 REMARK 500 THR A 288 LEU A 289 117.37 REMARK 500 TRP B 277 SER B 278 -139.43 REMARK 500 THR B 288 LEU B 289 117.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG B 285 -11.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0BY A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0BY B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UNJ RELATED DB: PDB REMARK 900 RELATED ID: 3UNK RELATED DB: PDB REMARK 900 RELATED ID: 3UNZ RELATED DB: PDB REMARK 900 RELATED ID: 3UO4 RELATED DB: PDB REMARK 900 RELATED ID: 3UO5 RELATED DB: PDB REMARK 900 RELATED ID: 3UOD RELATED DB: PDB REMARK 900 RELATED ID: 3UOH RELATED DB: PDB REMARK 900 RELATED ID: 3UOJ RELATED DB: PDB REMARK 900 RELATED ID: 3UOK RELATED DB: PDB REMARK 900 RELATED ID: 3UOL RELATED DB: PDB REMARK 900 RELATED ID: 3UP2 RELATED DB: PDB REMARK 900 RELATED ID: 3UP7 RELATED DB: PDB DBREF 3UO6 A 123 401 UNP O14965 AURKA_HUMAN 123 401 DBREF 3UO6 B 123 401 UNP O14965 AURKA_HUMAN 123 401 SEQADV 3UO6 ASP A 287 UNP O14965 THR 287 ENGINEERED MUTATION SEQADV 3UO6 ASP B 287 UNP O14965 THR 287 ENGINEERED MUTATION SEQRES 1 A 279 SER LYS LYS ARG GLN TRP ALA LEU GLU ASP PHE GLU ILE SEQRES 2 A 279 GLY ARG PRO LEU GLY LYS GLY LYS PHE GLY ASN VAL TYR SEQRES 3 A 279 LEU ALA ARG GLU LYS GLN SER LYS PHE ILE LEU ALA LEU SEQRES 4 A 279 LYS VAL LEU PHE LYS ALA GLN LEU GLU LYS ALA GLY VAL SEQRES 5 A 279 GLU HIS GLN LEU ARG ARG GLU VAL GLU ILE GLN SER HIS SEQRES 6 A 279 LEU ARG HIS PRO ASN ILE LEU ARG LEU TYR GLY TYR PHE SEQRES 7 A 279 HIS ASP ALA THR ARG VAL TYR LEU ILE LEU GLU TYR ALA SEQRES 8 A 279 PRO LEU GLY THR VAL TYR ARG GLU LEU GLN LYS LEU SER SEQRES 9 A 279 LYS PHE ASP GLU GLN ARG THR ALA THR TYR ILE THR GLU SEQRES 10 A 279 LEU ALA ASN ALA LEU SER TYR CYS HIS SER LYS ARG VAL SEQRES 11 A 279 ILE HIS ARG ASP ILE LYS PRO GLU ASN LEU LEU LEU GLY SEQRES 12 A 279 SER ALA GLY GLU LEU LYS ILE ALA ASP PHE GLY TRP SER SEQRES 13 A 279 VAL HIS ALA PRO SER SER ARG ARG ASP THR LEU CYS GLY SEQRES 14 A 279 THR LEU ASP TYR LEU PRO PRO GLU MET ILE GLU GLY ARG SEQRES 15 A 279 MET HIS ASP GLU LYS VAL ASP LEU TRP SER LEU GLY VAL SEQRES 16 A 279 LEU CYS TYR GLU PHE LEU VAL GLY LYS PRO PRO PHE GLU SEQRES 17 A 279 ALA ASN THR TYR GLN GLU THR TYR LYS ARG ILE SER ARG SEQRES 18 A 279 VAL GLU PHE THR PHE PRO ASP PHE VAL THR GLU GLY ALA SEQRES 19 A 279 ARG ASP LEU ILE SER ARG LEU LEU LYS HIS ASN PRO SER SEQRES 20 A 279 GLN ARG PRO MET LEU ARG GLU VAL LEU GLU HIS PRO TRP SEQRES 21 A 279 ILE THR ALA ASN SER SER LYS PRO SER ASN CYS GLN ASN SEQRES 22 A 279 LYS GLU SER ALA SER LYS SEQRES 1 B 279 SER LYS LYS ARG GLN TRP ALA LEU GLU ASP PHE GLU ILE SEQRES 2 B 279 GLY ARG PRO LEU GLY LYS GLY LYS PHE GLY ASN VAL TYR SEQRES 3 B 279 LEU ALA ARG GLU LYS GLN SER LYS PHE ILE LEU ALA LEU SEQRES 4 B 279 LYS VAL LEU PHE LYS ALA GLN LEU GLU LYS ALA GLY VAL SEQRES 5 B 279 GLU HIS GLN LEU ARG ARG GLU VAL GLU ILE GLN SER HIS SEQRES 6 B 279 LEU ARG HIS PRO ASN ILE LEU ARG LEU TYR GLY TYR PHE SEQRES 7 B 279 HIS ASP ALA THR ARG VAL TYR LEU ILE LEU GLU TYR ALA SEQRES 8 B 279 PRO LEU GLY THR VAL TYR ARG GLU LEU GLN LYS LEU SER SEQRES 9 B 279 LYS PHE ASP GLU GLN ARG THR ALA THR TYR ILE THR GLU SEQRES 10 B 279 LEU ALA ASN ALA LEU SER TYR CYS HIS SER LYS ARG VAL SEQRES 11 B 279 ILE HIS ARG ASP ILE LYS PRO GLU ASN LEU LEU LEU GLY SEQRES 12 B 279 SER ALA GLY GLU LEU LYS ILE ALA ASP PHE GLY TRP SER SEQRES 13 B 279 VAL HIS ALA PRO SER SER ARG ARG ASP THR LEU CYS GLY SEQRES 14 B 279 THR LEU ASP TYR LEU PRO PRO GLU MET ILE GLU GLY ARG SEQRES 15 B 279 MET HIS ASP GLU LYS VAL ASP LEU TRP SER LEU GLY VAL SEQRES 16 B 279 LEU CYS TYR GLU PHE LEU VAL GLY LYS PRO PRO PHE GLU SEQRES 17 B 279 ALA ASN THR TYR GLN GLU THR TYR LYS ARG ILE SER ARG SEQRES 18 B 279 VAL GLU PHE THR PHE PRO ASP PHE VAL THR GLU GLY ALA SEQRES 19 B 279 ARG ASP LEU ILE SER ARG LEU LEU LYS HIS ASN PRO SER SEQRES 20 B 279 GLN ARG PRO MET LEU ARG GLU VAL LEU GLU HIS PRO TRP SEQRES 21 B 279 ILE THR ALA ASN SER SER LYS PRO SER ASN CYS GLN ASN SEQRES 22 B 279 LYS GLU SER ALA SER LYS HET 0BY A 1 24 HET EDO A 2 4 HET EDO A 3 4 HET 0BY B 2 24 HET EDO B 1 4 HET EDO B 4 4 HETNAM 0BY 4-({4-[(2-CHLOROPHENYL)AMINO]PYRIMIDIN-2-YL}AMINO) HETNAM 2 0BY BENZOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 0BY 2(C17 H13 CL N4 O2) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 9 HOH *21(H2 O) HELIX 1 1 ALA A 129 GLU A 131 5 3 HELIX 2 2 LYS A 166 GLY A 173 1 8 HELIX 3 3 GLU A 175 SER A 186 1 12 HELIX 4 4 THR A 217 SER A 226 1 10 HELIX 5 5 ASP A 229 LYS A 250 1 22 HELIX 6 6 LYS A 258 GLU A 260 5 3 HELIX 7 7 THR A 292 LEU A 296 5 5 HELIX 8 8 PRO A 297 GLU A 302 1 6 HELIX 9 9 LYS A 309 GLY A 325 1 17 HELIX 10 10 THR A 333 ARG A 343 1 11 HELIX 11 11 THR A 353 LEU A 364 1 12 HELIX 12 12 ASN A 367 ARG A 371 5 5 HELIX 13 13 MET A 373 HIS A 380 1 8 HELIX 14 14 HIS A 380 SER A 387 1 8 HELIX 15 15 ALA B 129 GLU B 131 5 3 HELIX 16 16 LYS B 166 GLY B 173 1 8 HELIX 17 17 GLU B 175 SER B 186 1 12 HELIX 18 18 THR B 217 SER B 226 1 10 HELIX 19 19 ASP B 229 LYS B 250 1 22 HELIX 20 20 LYS B 258 GLU B 260 5 3 HELIX 21 21 THR B 292 LEU B 296 5 5 HELIX 22 22 PRO B 297 GLU B 302 1 6 HELIX 23 23 LYS B 309 GLY B 325 1 17 HELIX 24 24 THR B 333 ARG B 343 1 11 HELIX 25 25 THR B 353 LEU B 364 1 12 HELIX 26 26 ASN B 367 ARG B 371 5 5 HELIX 27 27 MET B 373 HIS B 380 1 8 HELIX 28 28 HIS B 380 SER B 387 1 8 SHEET 1 A 5 PHE A 133 LYS A 141 0 SHEET 2 A 5 GLY A 145 GLU A 152 -1 O LEU A 149 N GLY A 136 SHEET 3 A 5 ILE A 158 LEU A 164 -1 O VAL A 163 N ASN A 146 SHEET 4 A 5 VAL A 206 LEU A 210 -1 O LEU A 210 N ALA A 160 SHEET 5 A 5 LEU A 196 HIS A 201 -1 N GLY A 198 O ILE A 209 SHEET 1 B 2 LEU A 262 LEU A 264 0 SHEET 2 B 2 LEU A 270 ILE A 272 -1 O LYS A 271 N LEU A 263 SHEET 1 C 5 PHE B 133 LYS B 141 0 SHEET 2 C 5 GLY B 145 GLU B 152 -1 O LEU B 149 N GLY B 136 SHEET 3 C 5 ILE B 158 LEU B 164 -1 O VAL B 163 N ASN B 146 SHEET 4 C 5 VAL B 206 LEU B 210 -1 O LEU B 210 N ALA B 160 SHEET 5 C 5 LEU B 196 HIS B 201 -1 N GLY B 198 O ILE B 209 SHEET 1 D 2 LEU B 262 LEU B 264 0 SHEET 2 D 2 LEU B 270 ILE B 272 -1 O LYS B 271 N LEU B 263 CISPEP 1 LEU A 289 CYS A 290 0 -29.69 CISPEP 2 LEU B 289 CYS B 290 0 -28.32 SITE 1 AC1 12 ARG A 137 LEU A 139 GLU A 211 TYR A 212 SITE 2 AC1 12 ALA A 213 GLY A 216 THR A 217 GLU A 260 SITE 3 AC1 12 LEU A 263 ALA A 273 VAL A 279 ALA A 281 SITE 1 AC2 2 TYR A 148 ARG A 205 SITE 1 AC3 2 HIS A 366 ASN A 367 SITE 1 AC4 12 ARG B 137 LEU B 139 GLU B 211 TYR B 212 SITE 2 AC4 12 ALA B 213 GLY B 216 THR B 217 GLU B 260 SITE 3 AC4 12 LEU B 263 ALA B 273 VAL B 279 ALA B 281 SITE 1 AC5 2 TYR B 148 ARG B 205 SITE 1 AC6 1 HIS B 366 CRYST1 85.700 85.700 76.650 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011669 0.006737 0.000000 0.00000 SCALE2 0.000000 0.013474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013046 0.00000