data_3UPA # _entry.id 3UPA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UPA pdb_00003upa 10.2210/pdb3upa/pdb RCSB RCSB069039 ? ? WWPDB D_1000069039 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-20 2 'Structure model' 1 1 2012-08-15 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-11-01 5 'Structure model' 1 4 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_entry_details 7 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 3UPA _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2011-11-17 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3UPC _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dudgeon, K.' 1 'Rouet, R.' 2 'Kokmeijer, I.' 3 'Langley, D.B.' 4 'Christ, D.' 5 # _citation.id primary _citation.title 'General strategy for the generation of human antibody variable domains with increased aggregation resistance' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 10879 _citation.page_last 10884 _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22745168 _citation.pdbx_database_id_DOI 10.1073/pnas.1202866109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dudgeon, K.' 1 ? primary 'Rouet, R.' 2 ? primary 'Kokmeijer, I.' 3 ? primary 'Schofield, P.' 4 ? primary 'Stolp, J.' 5 ? primary 'Langley, D.' 6 ? primary 'Stock, D.' 7 ? primary 'Christ, D.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'kappa light chain variable domain' 11640.765 2 ? ? ? ? 2 water nat water 18.015 94 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYDADDLQSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQSYSTPNTFGQGTKVEIK ; _entity_poly.pdbx_seq_one_letter_code_can ;DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYDADDLQSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQSYSTPNTFGQGTKVEIK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ILE n 1 3 GLN n 1 4 MET n 1 5 THR n 1 6 GLN n 1 7 SER n 1 8 PRO n 1 9 SER n 1 10 SER n 1 11 LEU n 1 12 SER n 1 13 ALA n 1 14 SER n 1 15 VAL n 1 16 GLY n 1 17 ASP n 1 18 ARG n 1 19 VAL n 1 20 THR n 1 21 ILE n 1 22 THR n 1 23 CYS n 1 24 ARG n 1 25 ALA n 1 26 SER n 1 27 GLN n 1 28 SER n 1 29 ILE n 1 30 SER n 1 31 SER n 1 32 TYR n 1 33 LEU n 1 34 ASN n 1 35 TRP n 1 36 TYR n 1 37 GLN n 1 38 GLN n 1 39 LYS n 1 40 PRO n 1 41 GLY n 1 42 LYS n 1 43 ALA n 1 44 PRO n 1 45 LYS n 1 46 LEU n 1 47 LEU n 1 48 ILE n 1 49 TYR n 1 50 ASP n 1 51 ALA n 1 52 ASP n 1 53 ASP n 1 54 LEU n 1 55 GLN n 1 56 SER n 1 57 GLY n 1 58 VAL n 1 59 PRO n 1 60 SER n 1 61 ARG n 1 62 PHE n 1 63 SER n 1 64 GLY n 1 65 SER n 1 66 GLY n 1 67 SER n 1 68 GLY n 1 69 THR n 1 70 ASP n 1 71 PHE n 1 72 THR n 1 73 LEU n 1 74 THR n 1 75 ILE n 1 76 SER n 1 77 SER n 1 78 LEU n 1 79 GLN n 1 80 PRO n 1 81 GLU n 1 82 ASP n 1 83 PHE n 1 84 ALA n 1 85 THR n 1 86 TYR n 1 87 TYR n 1 88 CYS n 1 89 GLN n 1 90 GLN n 1 91 SER n 1 92 TYR n 1 93 SER n 1 94 THR n 1 95 PRO n 1 96 ASN n 1 97 THR n 1 98 PHE n 1 99 GLY n 1 100 GLN n 1 101 GLY n 1 102 THR n 1 103 LYS n 1 104 VAL n 1 105 GLU n 1 106 ILE n 1 107 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain TG1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type phagemid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pHEN1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 MET 4 4 4 MET MET A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 TRP 35 35 35 TRP TRP A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 GLN 55 55 55 GLN GLN A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 CYS 88 88 88 CYS CYS A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 GLN 100 100 100 GLN GLN A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 LYS 107 107 107 LYS LYS A . n B 1 1 ASP 1 1 1 ASP ASP B . n B 1 2 ILE 2 2 2 ILE ILE B . n B 1 3 GLN 3 3 3 GLN GLN B . n B 1 4 MET 4 4 4 MET MET B . n B 1 5 THR 5 5 5 THR THR B . n B 1 6 GLN 6 6 6 GLN GLN B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 PRO 8 8 8 PRO PRO B . n B 1 9 SER 9 9 9 SER SER B . n B 1 10 SER 10 10 10 SER SER B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 SER 12 12 12 SER SER B . n B 1 13 ALA 13 13 13 ALA ALA B . n B 1 14 SER 14 14 14 SER SER B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 ARG 18 18 18 ARG ARG B . n B 1 19 VAL 19 19 19 VAL VAL B . n B 1 20 THR 20 20 20 THR THR B . n B 1 21 ILE 21 21 21 ILE ILE B . n B 1 22 THR 22 22 22 THR THR B . n B 1 23 CYS 23 23 23 CYS CYS B . n B 1 24 ARG 24 24 24 ARG ARG B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 SER 26 26 26 SER SER B . n B 1 27 GLN 27 27 27 GLN GLN B . n B 1 28 SER 28 28 28 SER SER B . n B 1 29 ILE 29 29 29 ILE ILE B . n B 1 30 SER 30 30 30 SER SER B . n B 1 31 SER 31 31 31 SER SER B . n B 1 32 TYR 32 32 32 TYR TYR B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 ASN 34 34 34 ASN ASN B . n B 1 35 TRP 35 35 35 TRP TRP B . n B 1 36 TYR 36 36 36 TYR TYR B . n B 1 37 GLN 37 37 37 GLN GLN B . n B 1 38 GLN 38 38 38 GLN GLN B . n B 1 39 LYS 39 39 39 LYS LYS B . n B 1 40 PRO 40 40 40 PRO PRO B . n B 1 41 GLY 41 41 41 GLY GLY B . n B 1 42 LYS 42 42 42 LYS LYS B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 PRO 44 44 44 PRO PRO B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 ILE 48 48 48 ILE ILE B . n B 1 49 TYR 49 49 49 TYR TYR B . n B 1 50 ASP 50 50 50 ASP ASP B . n B 1 51 ALA 51 51 51 ALA ALA B . n B 1 52 ASP 52 52 52 ASP ASP B . n B 1 53 ASP 53 53 53 ASP ASP B . n B 1 54 LEU 54 54 54 LEU LEU B . n B 1 55 GLN 55 55 55 GLN GLN B . n B 1 56 SER 56 56 56 SER SER B . n B 1 57 GLY 57 57 57 GLY GLY B . n B 1 58 VAL 58 58 58 VAL VAL B . n B 1 59 PRO 59 59 59 PRO PRO B . n B 1 60 SER 60 60 60 SER SER B . n B 1 61 ARG 61 61 61 ARG ARG B . n B 1 62 PHE 62 62 62 PHE PHE B . n B 1 63 SER 63 63 63 SER SER B . n B 1 64 GLY 64 64 64 GLY GLY B . n B 1 65 SER 65 65 65 SER SER B . n B 1 66 GLY 66 66 66 GLY GLY B . n B 1 67 SER 67 67 67 SER SER B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 THR 69 69 69 THR THR B . n B 1 70 ASP 70 70 70 ASP ASP B . n B 1 71 PHE 71 71 71 PHE PHE B . n B 1 72 THR 72 72 72 THR THR B . n B 1 73 LEU 73 73 73 LEU LEU B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 ILE 75 75 75 ILE ILE B . n B 1 76 SER 76 76 76 SER SER B . n B 1 77 SER 77 77 77 SER SER B . n B 1 78 LEU 78 78 78 LEU LEU B . n B 1 79 GLN 79 79 79 GLN GLN B . n B 1 80 PRO 80 80 80 PRO PRO B . n B 1 81 GLU 81 81 81 GLU GLU B . n B 1 82 ASP 82 82 82 ASP ASP B . n B 1 83 PHE 83 83 83 PHE PHE B . n B 1 84 ALA 84 84 84 ALA ALA B . n B 1 85 THR 85 85 85 THR THR B . n B 1 86 TYR 86 86 86 TYR TYR B . n B 1 87 TYR 87 87 87 TYR TYR B . n B 1 88 CYS 88 88 88 CYS CYS B . n B 1 89 GLN 89 89 89 GLN GLN B . n B 1 90 GLN 90 90 90 GLN GLN B . n B 1 91 SER 91 91 91 SER SER B . n B 1 92 TYR 92 92 92 TYR TYR B . n B 1 93 SER 93 93 93 SER SER B . n B 1 94 THR 94 94 94 THR THR B . n B 1 95 PRO 95 95 95 PRO PRO B . n B 1 96 ASN 96 96 96 ASN ASN B . n B 1 97 THR 97 97 97 THR THR B . n B 1 98 PHE 98 98 98 PHE PHE B . n B 1 99 GLY 99 99 99 GLY GLY B . n B 1 100 GLN 100 100 100 GLN GLN B . n B 1 101 GLY 101 101 101 GLY GLY B . n B 1 102 THR 102 102 102 THR THR B . n B 1 103 LYS 103 103 103 LYS LYS B . n B 1 104 VAL 104 104 104 VAL VAL B . n B 1 105 GLU 105 105 105 GLU GLU B . n B 1 106 ILE 106 106 106 ILE ILE B . n B 1 107 LYS 107 107 107 LYS LYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 108 1 HOH HOH A . C 2 HOH 2 109 2 HOH HOH A . C 2 HOH 3 110 4 HOH HOH A . C 2 HOH 4 111 5 HOH HOH A . C 2 HOH 5 112 8 HOH HOH A . C 2 HOH 6 113 13 HOH HOH A . C 2 HOH 7 114 14 HOH HOH A . C 2 HOH 8 115 15 HOH HOH A . C 2 HOH 9 116 17 HOH HOH A . C 2 HOH 10 117 18 HOH HOH A . C 2 HOH 11 118 20 HOH HOH A . C 2 HOH 12 119 22 HOH HOH A . C 2 HOH 13 120 24 HOH HOH A . C 2 HOH 14 121 29 HOH HOH A . C 2 HOH 15 122 32 HOH HOH A . C 2 HOH 16 123 36 HOH HOH A . C 2 HOH 17 124 37 HOH HOH A . C 2 HOH 18 125 38 HOH HOH A . C 2 HOH 19 126 39 HOH HOH A . C 2 HOH 20 127 41 HOH HOH A . C 2 HOH 21 128 44 HOH HOH A . C 2 HOH 22 129 50 HOH HOH A . C 2 HOH 23 130 51 HOH HOH A . C 2 HOH 24 131 52 HOH HOH A . C 2 HOH 25 132 53 HOH HOH A . C 2 HOH 26 133 54 HOH HOH A . C 2 HOH 27 134 59 HOH HOH A . C 2 HOH 28 135 61 HOH HOH A . C 2 HOH 29 136 62 HOH HOH A . C 2 HOH 30 137 63 HOH HOH A . C 2 HOH 31 138 64 HOH HOH A . C 2 HOH 32 139 65 HOH HOH A . C 2 HOH 33 140 67 HOH HOH A . C 2 HOH 34 141 68 HOH HOH A . C 2 HOH 35 142 70 HOH HOH A . C 2 HOH 36 143 72 HOH HOH A . C 2 HOH 37 144 74 HOH HOH A . C 2 HOH 38 145 77 HOH HOH A . C 2 HOH 39 146 80 HOH HOH A . C 2 HOH 40 147 82 HOH HOH A . C 2 HOH 41 148 83 HOH HOH A . C 2 HOH 42 149 90 HOH HOH A . C 2 HOH 43 150 91 HOH HOH A . C 2 HOH 44 151 93 HOH HOH A . D 2 HOH 1 108 3 HOH HOH B . D 2 HOH 2 109 6 HOH HOH B . D 2 HOH 3 110 7 HOH HOH B . D 2 HOH 4 111 9 HOH HOH B . D 2 HOH 5 112 10 HOH HOH B . D 2 HOH 6 113 11 HOH HOH B . D 2 HOH 7 114 12 HOH HOH B . D 2 HOH 8 115 16 HOH HOH B . D 2 HOH 9 116 19 HOH HOH B . D 2 HOH 10 117 21 HOH HOH B . D 2 HOH 11 118 23 HOH HOH B . D 2 HOH 12 119 25 HOH HOH B . D 2 HOH 13 120 26 HOH HOH B . D 2 HOH 14 121 27 HOH HOH B . D 2 HOH 15 122 28 HOH HOH B . D 2 HOH 16 123 30 HOH HOH B . D 2 HOH 17 124 31 HOH HOH B . D 2 HOH 18 125 33 HOH HOH B . D 2 HOH 19 126 34 HOH HOH B . D 2 HOH 20 127 35 HOH HOH B . D 2 HOH 21 128 40 HOH HOH B . D 2 HOH 22 129 42 HOH HOH B . D 2 HOH 23 130 43 HOH HOH B . D 2 HOH 24 131 45 HOH HOH B . D 2 HOH 25 132 46 HOH HOH B . D 2 HOH 26 133 47 HOH HOH B . D 2 HOH 27 134 48 HOH HOH B . D 2 HOH 28 135 49 HOH HOH B . D 2 HOH 29 136 55 HOH HOH B . D 2 HOH 30 137 56 HOH HOH B . D 2 HOH 31 138 57 HOH HOH B . D 2 HOH 32 139 58 HOH HOH B . D 2 HOH 33 140 60 HOH HOH B . D 2 HOH 34 141 66 HOH HOH B . D 2 HOH 35 142 69 HOH HOH B . D 2 HOH 36 143 71 HOH HOH B . D 2 HOH 37 144 73 HOH HOH B . D 2 HOH 38 145 75 HOH HOH B . D 2 HOH 39 146 76 HOH HOH B . D 2 HOH 40 147 78 HOH HOH B . D 2 HOH 41 148 79 HOH HOH B . D 2 HOH 42 149 81 HOH HOH B . D 2 HOH 43 150 84 HOH HOH B . D 2 HOH 44 151 85 HOH HOH B . D 2 HOH 45 152 86 HOH HOH B . D 2 HOH 46 153 87 HOH HOH B . D 2 HOH 47 154 88 HOH HOH B . D 2 HOH 48 155 89 HOH HOH B . D 2 HOH 49 156 92 HOH HOH B . D 2 HOH 50 157 94 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 1 ? CG ? A ASP 1 CG 2 1 Y 1 A ASP 1 ? OD1 ? A ASP 1 OD1 3 1 Y 1 A ASP 1 ? OD2 ? A ASP 1 OD2 4 1 Y 1 A GLN 3 ? CG ? A GLN 3 CG 5 1 Y 1 A GLN 3 ? CD ? A GLN 3 CD 6 1 Y 1 A GLN 3 ? OE1 ? A GLN 3 OE1 7 1 Y 1 A GLN 3 ? NE2 ? A GLN 3 NE2 8 1 Y 1 A SER 9 ? OG ? A SER 9 OG 9 1 Y 1 A SER 10 ? OG ? A SER 10 OG 10 1 Y 1 A ARG 18 ? CG ? A ARG 18 CG 11 1 Y 1 A ARG 18 ? CD ? A ARG 18 CD 12 1 Y 1 A ARG 18 ? NE ? A ARG 18 NE 13 1 Y 1 A ARG 18 ? CZ ? A ARG 18 CZ 14 1 Y 1 A ARG 18 ? NH1 ? A ARG 18 NH1 15 1 Y 1 A ARG 18 ? NH2 ? A ARG 18 NH2 16 1 Y 1 A ARG 24 ? CG ? A ARG 24 CG 17 1 Y 1 A ARG 24 ? CD ? A ARG 24 CD 18 1 Y 1 A ARG 24 ? NE ? A ARG 24 NE 19 1 Y 1 A ARG 24 ? CZ ? A ARG 24 CZ 20 1 Y 1 A ARG 24 ? NH1 ? A ARG 24 NH1 21 1 Y 1 A ARG 24 ? NH2 ? A ARG 24 NH2 22 1 Y 1 A SER 28 ? OG ? A SER 28 OG 23 1 Y 1 A LYS 42 ? CG ? A LYS 42 CG 24 1 Y 1 A LYS 42 ? CD ? A LYS 42 CD 25 1 Y 1 A LYS 42 ? CE ? A LYS 42 CE 26 1 Y 1 A LYS 42 ? NZ ? A LYS 42 NZ 27 1 Y 1 A LYS 45 ? CG ? A LYS 45 CG 28 1 Y 1 A LYS 45 ? CD ? A LYS 45 CD 29 1 Y 1 A LYS 45 ? CE ? A LYS 45 CE 30 1 Y 1 A LYS 45 ? NZ ? A LYS 45 NZ 31 1 Y 1 A TYR 49 ? CG ? A TYR 49 CG 32 1 Y 1 A TYR 49 ? CD1 ? A TYR 49 CD1 33 1 Y 1 A TYR 49 ? CD2 ? A TYR 49 CD2 34 1 Y 1 A TYR 49 ? CE1 ? A TYR 49 CE1 35 1 Y 1 A TYR 49 ? CE2 ? A TYR 49 CE2 36 1 Y 1 A TYR 49 ? CZ ? A TYR 49 CZ 37 1 Y 1 A TYR 49 ? OH ? A TYR 49 OH 38 1 Y 1 A ASP 50 ? CG ? A ASP 50 CG 39 1 Y 1 A ASP 50 ? OD1 ? A ASP 50 OD1 40 1 Y 1 A ASP 50 ? OD2 ? A ASP 50 OD2 41 1 Y 1 A GLN 55 ? CG ? A GLN 55 CG 42 1 Y 1 A GLN 55 ? CD ? A GLN 55 CD 43 1 Y 1 A GLN 55 ? OE1 ? A GLN 55 OE1 44 1 Y 1 A GLN 55 ? NE2 ? A GLN 55 NE2 45 1 Y 1 A SER 67 ? OG ? A SER 67 OG 46 1 Y 1 A GLN 79 ? CG ? A GLN 79 CG 47 1 Y 1 A GLN 79 ? CD ? A GLN 79 CD 48 1 Y 1 A GLN 79 ? OE1 ? A GLN 79 OE1 49 1 Y 1 A GLN 79 ? NE2 ? A GLN 79 NE2 50 1 Y 1 A SER 93 ? OG ? A SER 93 OG 51 1 Y 1 A GLN 100 ? CG ? A GLN 100 CG 52 1 Y 1 A GLN 100 ? CD ? A GLN 100 CD 53 1 Y 1 A GLN 100 ? OE1 ? A GLN 100 OE1 54 1 Y 1 A GLN 100 ? NE2 ? A GLN 100 NE2 55 1 Y 1 A LYS 103 ? CG ? A LYS 103 CG 56 1 Y 1 A LYS 103 ? CD ? A LYS 103 CD 57 1 Y 1 A LYS 103 ? CE ? A LYS 103 CE 58 1 Y 1 A LYS 103 ? NZ ? A LYS 103 NZ 59 1 Y 1 A GLU 105 ? CG ? A GLU 105 CG 60 1 Y 1 A GLU 105 ? CD ? A GLU 105 CD 61 1 Y 1 A GLU 105 ? OE1 ? A GLU 105 OE1 62 1 Y 1 A GLU 105 ? OE2 ? A GLU 105 OE2 63 1 Y 1 A ILE 106 ? CG1 ? A ILE 106 CG1 64 1 Y 1 A ILE 106 ? CG2 ? A ILE 106 CG2 65 1 Y 1 A ILE 106 ? CD1 ? A ILE 106 CD1 66 1 Y 1 A LYS 107 ? CG ? A LYS 107 CG 67 1 Y 1 A LYS 107 ? CD ? A LYS 107 CD 68 1 Y 1 A LYS 107 ? CE ? A LYS 107 CE 69 1 Y 1 A LYS 107 ? NZ ? A LYS 107 NZ 70 1 Y 1 B ASP 1 ? CG ? B ASP 1 CG 71 1 Y 1 B ASP 1 ? OD1 ? B ASP 1 OD1 72 1 Y 1 B ASP 1 ? OD2 ? B ASP 1 OD2 73 1 Y 1 B GLN 3 ? CG ? B GLN 3 CG 74 1 Y 1 B GLN 3 ? CD ? B GLN 3 CD 75 1 Y 1 B GLN 3 ? OE1 ? B GLN 3 OE1 76 1 Y 1 B GLN 3 ? NE2 ? B GLN 3 NE2 77 1 Y 1 B SER 9 ? OG ? B SER 9 OG 78 1 Y 1 B SER 10 ? OG ? B SER 10 OG 79 1 Y 1 B LEU 11 ? CG ? B LEU 11 CG 80 1 Y 1 B LEU 11 ? CD1 ? B LEU 11 CD1 81 1 Y 1 B LEU 11 ? CD2 ? B LEU 11 CD2 82 1 Y 1 B SER 12 ? OG ? B SER 12 OG 83 1 Y 1 B VAL 19 ? CG1 ? B VAL 19 CG1 84 1 Y 1 B VAL 19 ? CG2 ? B VAL 19 CG2 85 1 Y 1 B ILE 21 ? CG1 ? B ILE 21 CG1 86 1 Y 1 B ILE 21 ? CG2 ? B ILE 21 CG2 87 1 Y 1 B ILE 21 ? CD1 ? B ILE 21 CD1 88 1 Y 1 B ARG 24 ? CG ? B ARG 24 CG 89 1 Y 1 B ARG 24 ? CD ? B ARG 24 CD 90 1 Y 1 B ARG 24 ? NE ? B ARG 24 NE 91 1 Y 1 B ARG 24 ? CZ ? B ARG 24 CZ 92 1 Y 1 B ARG 24 ? NH1 ? B ARG 24 NH1 93 1 Y 1 B ARG 24 ? NH2 ? B ARG 24 NH2 94 1 Y 1 B SER 28 ? OG ? B SER 28 OG 95 1 Y 1 B LYS 42 ? CG ? B LYS 42 CG 96 1 Y 1 B LYS 42 ? CD ? B LYS 42 CD 97 1 Y 1 B LYS 42 ? CE ? B LYS 42 CE 98 1 Y 1 B LYS 42 ? NZ ? B LYS 42 NZ 99 1 Y 1 B LYS 45 ? CG ? B LYS 45 CG 100 1 Y 1 B LYS 45 ? CD ? B LYS 45 CD 101 1 Y 1 B LYS 45 ? CE ? B LYS 45 CE 102 1 Y 1 B LYS 45 ? NZ ? B LYS 45 NZ 103 1 Y 1 B TYR 49 ? CG ? B TYR 49 CG 104 1 Y 1 B TYR 49 ? CD1 ? B TYR 49 CD1 105 1 Y 1 B TYR 49 ? CD2 ? B TYR 49 CD2 106 1 Y 1 B TYR 49 ? CE1 ? B TYR 49 CE1 107 1 Y 1 B TYR 49 ? CE2 ? B TYR 49 CE2 108 1 Y 1 B TYR 49 ? CZ ? B TYR 49 CZ 109 1 Y 1 B TYR 49 ? OH ? B TYR 49 OH 110 1 Y 1 B ASP 53 ? CG ? B ASP 53 CG 111 1 Y 1 B ASP 53 ? OD1 ? B ASP 53 OD1 112 1 Y 1 B ASP 53 ? OD2 ? B ASP 53 OD2 113 1 Y 1 B SER 60 ? OG ? B SER 60 OG 114 1 Y 1 B SER 63 ? OG ? B SER 63 OG 115 1 Y 1 B SER 76 ? OG ? B SER 76 OG 116 1 Y 1 B SER 77 ? OG ? B SER 77 OG 117 1 Y 1 B GLN 79 ? CG ? B GLN 79 CG 118 1 Y 1 B GLN 79 ? CD ? B GLN 79 CD 119 1 Y 1 B GLN 79 ? OE1 ? B GLN 79 OE1 120 1 Y 1 B GLN 79 ? NE2 ? B GLN 79 NE2 121 1 Y 1 B GLN 100 ? CG ? B GLN 100 CG 122 1 Y 1 B GLN 100 ? CD ? B GLN 100 CD 123 1 Y 1 B GLN 100 ? OE1 ? B GLN 100 OE1 124 1 Y 1 B GLN 100 ? NE2 ? B GLN 100 NE2 125 1 Y 1 B ILE 106 ? CG1 ? B ILE 106 CG1 126 1 Y 1 B ILE 106 ? CG2 ? B ILE 106 CG2 127 1 Y 1 B ILE 106 ? CD1 ? B ILE 106 CD1 128 1 Y 1 B LYS 107 ? CG ? B LYS 107 CG 129 1 Y 1 B LYS 107 ? CD ? B LYS 107 CD 130 1 Y 1 B LYS 107 ? CE ? B LYS 107 CE 131 1 Y 1 B LYS 107 ? NZ ? B LYS 107 NZ # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER 2.3.0 'Thu Mar 10 12:41:09 2011 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 Blu-Ice ice ? ? ? ? 'data collection' ? ? ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? # _cell.length_a 45.040 _cell.length_b 45.040 _cell.length_c 173.240 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3UPA _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.entry_id 3UPA _symmetry.Int_Tables_number 96 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3UPA _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 1.570 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 34.81 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '26% PEG 10000, 100mM Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-04-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'single crystal' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.95369 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.pdbx_wavelength_list 0.95369 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' _diffrn_source.pdbx_synchrotron_beamline MX2 # _reflns.entry_id 3UPA _reflns.d_resolution_high 1.800 _reflns.d_resolution_low 43.591 _reflns.number_all 17458 _reflns.number_obs 17458 _reflns.pdbx_netI_over_sigmaI 11.100 _reflns.pdbx_Rsym_value 0.140 _reflns.pdbx_redundancy 11.800 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.800 1.900 ? 30749 ? ? 0.788 0.900 0.788 ? 12.500 ? 3.000 ? 2461 ? ? 0.821 ? 99.600 0.821 0.227 1 1 1.900 2.010 ? 29005 ? ? 0.493 1.500 0.493 ? 12.400 ? 4.500 ? 2338 ? ? 0.514 ? 99.700 0.514 0.143 2 1 2.010 2.150 ? 27352 ? ? 0.313 2.400 0.313 ? 12.300 ? 6.700 ? 2225 ? ? 0.326 ? 99.900 0.326 0.091 3 1 2.150 2.320 ? 25092 ? ? 0.247 3.000 0.247 ? 12.200 ? 8.600 ? 2059 ? ? 0.258 ? 99.900 0.258 0.072 4 1 2.320 2.550 ? 23233 ? ? 0.199 3.700 0.199 ? 12.000 ? 9.800 ? 1932 ? ? 0.208 ? 99.900 0.208 0.059 5 1 2.550 2.850 ? 20704 ? ? 0.150 4.800 0.150 ? 11.800 ? 12.700 ? 1759 ? ? 0.157 ? 99.900 0.157 0.045 6 1 2.850 3.290 ? 17823 ? ? 0.116 5.800 0.116 ? 11.400 ? 17.800 ? 1561 ? ? 0.121 ? 99.900 0.121 0.035 7 1 3.290 4.020 ? 14664 ? ? 0.100 6.700 0.100 ? 10.700 ? 23.300 ? 1365 ? ? 0.105 ? 99.800 0.105 0.031 8 1 4.020 5.690 ? 10818 ? ? 0.068 9.200 0.068 ? 10.000 ? 25.200 ? 1080 ? ? 0.072 ? 99.400 0.072 0.022 9 1 5.690 45.040 ? 7100 ? ? 0.038 15.000 0.038 ? 10.500 ? 21.300 ? 678 ? ? 0.040 ? 99.800 0.040 0.012 10 1 # _refine.entry_id 3UPA _refine.ls_d_res_high 1.8000 _refine.ls_d_res_low 43.5900 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6200 _refine.ls_number_reflns_obs 17403 _refine.ls_number_reflns_all 17403 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.ls_R_factor_all 0.23136 _refine.ls_R_factor_obs 0.2314 _refine.ls_R_factor_R_work 0.2288 _refine.ls_wR_factor_R_work 0.2227 _refine.ls_R_factor_R_free 0.2830 _refine.ls_wR_factor_R_free 0.2777 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 885 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 20.592 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0700 _refine.aniso_B[2][2] -0.0700 _refine.aniso_B[3][3] 0.1400 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9210 _refine.correlation_coeff_Fo_to_Fc_free 0.8900 _refine.overall_SU_R_Cruickshank_DPI 0.1676 _refine.overall_SU_R_free 0.1620 _refine.pdbx_overall_ESU_R_Free 0.1620 _refine.overall_SU_ML 0.1060 _refine.overall_SU_B 6.4870 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 1F6L' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8421 _refine.B_iso_max 42.520 _refine.B_iso_min 6.030 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1503 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 1597 _refine_hist.d_res_high 1.8000 _refine_hist.d_res_low 43.5900 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1555 0.011 0.021 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 950 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2141 1.383 1.956 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2345 0.878 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 220 6.524 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 53 36.527 25.094 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 195 13.936 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 3 13.231 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 251 0.086 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1815 0.005 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 308 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.8000 _refine_ls_shell.d_res_low 1.8470 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.1600 _refine_ls_shell.number_reflns_R_work 1014 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2680 _refine_ls_shell.R_factor_R_free 0.3630 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1067 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3UPA _struct.title 'A general strategy for the generation of human antibody variable domains with increased aggregation resistance' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UPA _struct_keywords.text 'immunoglobulin fold, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3UPA _struct_ref.pdbx_db_accession 3UPA _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UPA A 1 ? 107 ? 3UPA 1 ? 107 ? 1 107 2 1 3UPA B 1 ? 107 ? 3UPA 1 ? 107 ? 1 107 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 79 ? PHE A 83 ? GLN A 79 PHE A 83 5 ? 5 HELX_P HELX_P2 2 GLN B 79 ? PHE B 83 ? GLN B 79 PHE B 83 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG B ? ? 1_555 A CYS 88 SG B ? A CYS 23 A CYS 88 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf2 disulf ? ? A CYS 23 SG A ? ? 1_555 A CYS 88 SG A ? A CYS 23 A CYS 88 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf3 disulf ? ? B CYS 23 SG B ? ? 1_555 B CYS 88 SG B ? B CYS 23 B CYS 88 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf4 disulf ? ? B CYS 23 SG A ? ? 1_555 B CYS 88 SG A ? B CYS 23 B CYS 88 1_555 ? ? ? ? ? ? ? 2.045 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 23 A CYS A 88 A CYS A 23 ? 1_555 CYS A 88 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 23 B CYS A 88 B CYS A 23 ? 1_555 CYS A 88 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS B 23 A CYS B 88 A CYS B 23 ? 1_555 CYS B 88 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS B 23 B CYS B 88 B CYS B 23 ? 1_555 CYS B 88 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 7 A . ? SER 7 A PRO 8 A ? PRO 8 A 1 -12.65 2 THR 94 A . ? THR 94 A PRO 95 A ? PRO 95 A 1 3.72 3 SER 7 B . ? SER 7 B PRO 8 B ? PRO 8 B 1 0.98 4 THR 94 B . ? THR 94 B PRO 95 B ? PRO 95 B 1 -0.30 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 4 ? E ? 6 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel F 1 2 ? parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 4 ? SER A 7 ? MET A 4 SER A 7 A 2 VAL A 19 ? ALA A 25 ? VAL A 19 ALA A 25 A 3 ASP A 70 ? ILE A 75 ? ASP A 70 ILE A 75 A 4 PHE A 62 ? SER A 67 ? PHE A 62 SER A 67 B 1 SER A 10 ? ALA A 13 ? SER A 10 ALA A 13 B 2 THR A 102 ? ILE A 106 ? THR A 102 ILE A 106 B 3 ALA A 84 ? GLN A 90 ? ALA A 84 GLN A 90 B 4 LEU A 33 ? GLN A 38 ? LEU A 33 GLN A 38 B 5 LYS A 45 ? TYR A 49 ? LYS A 45 TYR A 49 B 6 ASP A 53 ? LEU A 54 ? ASP A 53 LEU A 54 C 1 SER A 10 ? ALA A 13 ? SER A 10 ALA A 13 C 2 THR A 102 ? ILE A 106 ? THR A 102 ILE A 106 C 3 ALA A 84 ? GLN A 90 ? ALA A 84 GLN A 90 C 4 THR A 97 ? PHE A 98 ? THR A 97 PHE A 98 D 1 MET B 4 ? SER B 7 ? MET B 4 SER B 7 D 2 VAL B 19 ? ALA B 25 ? VAL B 19 ALA B 25 D 3 ASP B 70 ? ILE B 75 ? ASP B 70 ILE B 75 D 4 PHE B 62 ? SER B 67 ? PHE B 62 SER B 67 E 1 SER B 10 ? ALA B 13 ? SER B 10 ALA B 13 E 2 THR B 102 ? ILE B 106 ? THR B 102 ILE B 106 E 3 ALA B 84 ? GLN B 90 ? ALA B 84 GLN B 90 E 4 LEU B 33 ? GLN B 38 ? LEU B 33 GLN B 38 E 5 LYS B 45 ? TYR B 49 ? LYS B 45 TYR B 49 E 6 ASP B 53 ? LEU B 54 ? ASP B 53 LEU B 54 F 1 SER B 10 ? ALA B 13 ? SER B 10 ALA B 13 F 2 THR B 102 ? ILE B 106 ? THR B 102 ILE B 106 F 3 ALA B 84 ? GLN B 90 ? ALA B 84 GLN B 90 F 4 THR B 97 ? PHE B 98 ? THR B 97 PHE B 98 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 5 ? N THR A 5 O ARG A 24 ? O ARG A 24 A 2 3 N VAL A 19 ? N VAL A 19 O ILE A 75 ? O ILE A 75 A 3 4 O THR A 74 ? O THR A 74 N SER A 63 ? N SER A 63 B 1 2 N LEU A 11 ? N LEU A 11 O GLU A 105 ? O GLU A 105 B 2 3 O VAL A 104 ? O VAL A 104 N ALA A 84 ? N ALA A 84 B 3 4 O THR A 85 ? O THR A 85 N GLN A 38 ? N GLN A 38 B 4 5 N TRP A 35 ? N TRP A 35 O LEU A 47 ? O LEU A 47 B 5 6 N TYR A 49 ? N TYR A 49 O ASP A 53 ? O ASP A 53 C 1 2 N LEU A 11 ? N LEU A 11 O GLU A 105 ? O GLU A 105 C 2 3 O VAL A 104 ? O VAL A 104 N ALA A 84 ? N ALA A 84 C 3 4 N GLN A 90 ? N GLN A 90 O THR A 97 ? O THR A 97 D 1 2 N THR B 5 ? N THR B 5 O ARG B 24 ? O ARG B 24 D 2 3 N ILE B 21 ? N ILE B 21 O LEU B 73 ? O LEU B 73 D 3 4 O THR B 74 ? O THR B 74 N SER B 63 ? N SER B 63 E 1 2 N LEU B 11 ? N LEU B 11 O LYS B 103 ? O LYS B 103 E 2 3 O VAL B 104 ? O VAL B 104 N ALA B 84 ? N ALA B 84 E 3 4 O THR B 85 ? O THR B 85 N GLN B 38 ? N GLN B 38 E 4 5 N TRP B 35 ? N TRP B 35 O LEU B 47 ? O LEU B 47 E 5 6 N TYR B 49 ? N TYR B 49 O ASP B 53 ? O ASP B 53 F 1 2 N LEU B 11 ? N LEU B 11 O LYS B 103 ? O LYS B 103 F 2 3 O VAL B 104 ? O VAL B 104 N ALA B 84 ? N ALA B 84 F 3 4 N GLN B 90 ? N GLN B 90 O THR B 97 ? O THR B 97 # _pdbx_entry_details.entry_id 3UPA _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 30 ? ? 33.60 -110.49 2 1 ALA A 51 ? ? 76.82 -47.17 3 1 ASP A 52 ? ? -140.00 14.81 4 1 SER B 30 ? ? 46.66 -124.23 5 1 ALA B 51 ? ? 74.17 -32.51 6 1 ASP B 52 ? ? -144.64 -1.16 7 1 ALA B 84 ? ? 179.11 170.04 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 123 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 20.3566 -18.3003 16.5852 0.0924 0.0131 0.0487 0.0017 -0.0015 -0.0001 2.0828 1.7525 1.2983 1.1071 -0.8261 -0.1103 0.0285 -0.0557 0.0272 -0.0279 -0.1258 -0.1002 0.2434 0.0841 0.0474 'X-RAY DIFFRACTION' 2 ? refined 14.9164 -0.9206 4.1609 0.0167 0.0813 0.0444 0.0337 0.0092 0.0363 1.4649 1.8278 2.1015 -0.2206 -0.2782 0.8572 0.0873 -0.1182 0.0308 0.1783 0.0412 -0.0537 -0.0160 -0.0357 -0.1448 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 105 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 1 B 106 ? . . . . ? # _pdbx_phasing_MR.entry_id 3UPA _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.500 _pdbx_phasing_MR.d_res_low_rotation 43.590 _pdbx_phasing_MR.d_res_high_translation 3.500 _pdbx_phasing_MR.d_res_low_translation 43.590 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HOH O O N N 137 HOH H1 H N N 138 HOH H2 H N N 139 ILE N N N N 140 ILE CA C N S 141 ILE C C N N 142 ILE O O N N 143 ILE CB C N S 144 ILE CG1 C N N 145 ILE CG2 C N N 146 ILE CD1 C N N 147 ILE OXT O N N 148 ILE H H N N 149 ILE H2 H N N 150 ILE HA H N N 151 ILE HB H N N 152 ILE HG12 H N N 153 ILE HG13 H N N 154 ILE HG21 H N N 155 ILE HG22 H N N 156 ILE HG23 H N N 157 ILE HD11 H N N 158 ILE HD12 H N N 159 ILE HD13 H N N 160 ILE HXT H N N 161 LEU N N N N 162 LEU CA C N S 163 LEU C C N N 164 LEU O O N N 165 LEU CB C N N 166 LEU CG C N N 167 LEU CD1 C N N 168 LEU CD2 C N N 169 LEU OXT O N N 170 LEU H H N N 171 LEU H2 H N N 172 LEU HA H N N 173 LEU HB2 H N N 174 LEU HB3 H N N 175 LEU HG H N N 176 LEU HD11 H N N 177 LEU HD12 H N N 178 LEU HD13 H N N 179 LEU HD21 H N N 180 LEU HD22 H N N 181 LEU HD23 H N N 182 LEU HXT H N N 183 LYS N N N N 184 LYS CA C N S 185 LYS C C N N 186 LYS O O N N 187 LYS CB C N N 188 LYS CG C N N 189 LYS CD C N N 190 LYS CE C N N 191 LYS NZ N N N 192 LYS OXT O N N 193 LYS H H N N 194 LYS H2 H N N 195 LYS HA H N N 196 LYS HB2 H N N 197 LYS HB3 H N N 198 LYS HG2 H N N 199 LYS HG3 H N N 200 LYS HD2 H N N 201 LYS HD3 H N N 202 LYS HE2 H N N 203 LYS HE3 H N N 204 LYS HZ1 H N N 205 LYS HZ2 H N N 206 LYS HZ3 H N N 207 LYS HXT H N N 208 MET N N N N 209 MET CA C N S 210 MET C C N N 211 MET O O N N 212 MET CB C N N 213 MET CG C N N 214 MET SD S N N 215 MET CE C N N 216 MET OXT O N N 217 MET H H N N 218 MET H2 H N N 219 MET HA H N N 220 MET HB2 H N N 221 MET HB3 H N N 222 MET HG2 H N N 223 MET HG3 H N N 224 MET HE1 H N N 225 MET HE2 H N N 226 MET HE3 H N N 227 MET HXT H N N 228 PHE N N N N 229 PHE CA C N S 230 PHE C C N N 231 PHE O O N N 232 PHE CB C N N 233 PHE CG C Y N 234 PHE CD1 C Y N 235 PHE CD2 C Y N 236 PHE CE1 C Y N 237 PHE CE2 C Y N 238 PHE CZ C Y N 239 PHE OXT O N N 240 PHE H H N N 241 PHE H2 H N N 242 PHE HA H N N 243 PHE HB2 H N N 244 PHE HB3 H N N 245 PHE HD1 H N N 246 PHE HD2 H N N 247 PHE HE1 H N N 248 PHE HE2 H N N 249 PHE HZ H N N 250 PHE HXT H N N 251 PRO N N N N 252 PRO CA C N S 253 PRO C C N N 254 PRO O O N N 255 PRO CB C N N 256 PRO CG C N N 257 PRO CD C N N 258 PRO OXT O N N 259 PRO H H N N 260 PRO HA H N N 261 PRO HB2 H N N 262 PRO HB3 H N N 263 PRO HG2 H N N 264 PRO HG3 H N N 265 PRO HD2 H N N 266 PRO HD3 H N N 267 PRO HXT H N N 268 SER N N N N 269 SER CA C N S 270 SER C C N N 271 SER O O N N 272 SER CB C N N 273 SER OG O N N 274 SER OXT O N N 275 SER H H N N 276 SER H2 H N N 277 SER HA H N N 278 SER HB2 H N N 279 SER HB3 H N N 280 SER HG H N N 281 SER HXT H N N 282 THR N N N N 283 THR CA C N S 284 THR C C N N 285 THR O O N N 286 THR CB C N R 287 THR OG1 O N N 288 THR CG2 C N N 289 THR OXT O N N 290 THR H H N N 291 THR H2 H N N 292 THR HA H N N 293 THR HB H N N 294 THR HG1 H N N 295 THR HG21 H N N 296 THR HG22 H N N 297 THR HG23 H N N 298 THR HXT H N N 299 TRP N N N N 300 TRP CA C N S 301 TRP C C N N 302 TRP O O N N 303 TRP CB C N N 304 TRP CG C Y N 305 TRP CD1 C Y N 306 TRP CD2 C Y N 307 TRP NE1 N Y N 308 TRP CE2 C Y N 309 TRP CE3 C Y N 310 TRP CZ2 C Y N 311 TRP CZ3 C Y N 312 TRP CH2 C Y N 313 TRP OXT O N N 314 TRP H H N N 315 TRP H2 H N N 316 TRP HA H N N 317 TRP HB2 H N N 318 TRP HB3 H N N 319 TRP HD1 H N N 320 TRP HE1 H N N 321 TRP HE3 H N N 322 TRP HZ2 H N N 323 TRP HZ3 H N N 324 TRP HH2 H N N 325 TRP HXT H N N 326 TYR N N N N 327 TYR CA C N S 328 TYR C C N N 329 TYR O O N N 330 TYR CB C N N 331 TYR CG C Y N 332 TYR CD1 C Y N 333 TYR CD2 C Y N 334 TYR CE1 C Y N 335 TYR CE2 C Y N 336 TYR CZ C Y N 337 TYR OH O N N 338 TYR OXT O N N 339 TYR H H N N 340 TYR H2 H N N 341 TYR HA H N N 342 TYR HB2 H N N 343 TYR HB3 H N N 344 TYR HD1 H N N 345 TYR HD2 H N N 346 TYR HE1 H N N 347 TYR HE2 H N N 348 TYR HH H N N 349 TYR HXT H N N 350 VAL N N N N 351 VAL CA C N S 352 VAL C C N N 353 VAL O O N N 354 VAL CB C N N 355 VAL CG1 C N N 356 VAL CG2 C N N 357 VAL OXT O N N 358 VAL H H N N 359 VAL H2 H N N 360 VAL HA H N N 361 VAL HB H N N 362 VAL HG11 H N N 363 VAL HG12 H N N 364 VAL HG13 H N N 365 VAL HG21 H N N 366 VAL HG22 H N N 367 VAL HG23 H N N 368 VAL HXT H N N 369 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HOH O H1 sing N N 129 HOH O H2 sing N N 130 ILE N CA sing N N 131 ILE N H sing N N 132 ILE N H2 sing N N 133 ILE CA C sing N N 134 ILE CA CB sing N N 135 ILE CA HA sing N N 136 ILE C O doub N N 137 ILE C OXT sing N N 138 ILE CB CG1 sing N N 139 ILE CB CG2 sing N N 140 ILE CB HB sing N N 141 ILE CG1 CD1 sing N N 142 ILE CG1 HG12 sing N N 143 ILE CG1 HG13 sing N N 144 ILE CG2 HG21 sing N N 145 ILE CG2 HG22 sing N N 146 ILE CG2 HG23 sing N N 147 ILE CD1 HD11 sing N N 148 ILE CD1 HD12 sing N N 149 ILE CD1 HD13 sing N N 150 ILE OXT HXT sing N N 151 LEU N CA sing N N 152 LEU N H sing N N 153 LEU N H2 sing N N 154 LEU CA C sing N N 155 LEU CA CB sing N N 156 LEU CA HA sing N N 157 LEU C O doub N N 158 LEU C OXT sing N N 159 LEU CB CG sing N N 160 LEU CB HB2 sing N N 161 LEU CB HB3 sing N N 162 LEU CG CD1 sing N N 163 LEU CG CD2 sing N N 164 LEU CG HG sing N N 165 LEU CD1 HD11 sing N N 166 LEU CD1 HD12 sing N N 167 LEU CD1 HD13 sing N N 168 LEU CD2 HD21 sing N N 169 LEU CD2 HD22 sing N N 170 LEU CD2 HD23 sing N N 171 LEU OXT HXT sing N N 172 LYS N CA sing N N 173 LYS N H sing N N 174 LYS N H2 sing N N 175 LYS CA C sing N N 176 LYS CA CB sing N N 177 LYS CA HA sing N N 178 LYS C O doub N N 179 LYS C OXT sing N N 180 LYS CB CG sing N N 181 LYS CB HB2 sing N N 182 LYS CB HB3 sing N N 183 LYS CG CD sing N N 184 LYS CG HG2 sing N N 185 LYS CG HG3 sing N N 186 LYS CD CE sing N N 187 LYS CD HD2 sing N N 188 LYS CD HD3 sing N N 189 LYS CE NZ sing N N 190 LYS CE HE2 sing N N 191 LYS CE HE3 sing N N 192 LYS NZ HZ1 sing N N 193 LYS NZ HZ2 sing N N 194 LYS NZ HZ3 sing N N 195 LYS OXT HXT sing N N 196 MET N CA sing N N 197 MET N H sing N N 198 MET N H2 sing N N 199 MET CA C sing N N 200 MET CA CB sing N N 201 MET CA HA sing N N 202 MET C O doub N N 203 MET C OXT sing N N 204 MET CB CG sing N N 205 MET CB HB2 sing N N 206 MET CB HB3 sing N N 207 MET CG SD sing N N 208 MET CG HG2 sing N N 209 MET CG HG3 sing N N 210 MET SD CE sing N N 211 MET CE HE1 sing N N 212 MET CE HE2 sing N N 213 MET CE HE3 sing N N 214 MET OXT HXT sing N N 215 PHE N CA sing N N 216 PHE N H sing N N 217 PHE N H2 sing N N 218 PHE CA C sing N N 219 PHE CA CB sing N N 220 PHE CA HA sing N N 221 PHE C O doub N N 222 PHE C OXT sing N N 223 PHE CB CG sing N N 224 PHE CB HB2 sing N N 225 PHE CB HB3 sing N N 226 PHE CG CD1 doub Y N 227 PHE CG CD2 sing Y N 228 PHE CD1 CE1 sing Y N 229 PHE CD1 HD1 sing N N 230 PHE CD2 CE2 doub Y N 231 PHE CD2 HD2 sing N N 232 PHE CE1 CZ doub Y N 233 PHE CE1 HE1 sing N N 234 PHE CE2 CZ sing Y N 235 PHE CE2 HE2 sing N N 236 PHE CZ HZ sing N N 237 PHE OXT HXT sing N N 238 PRO N CA sing N N 239 PRO N CD sing N N 240 PRO N H sing N N 241 PRO CA C sing N N 242 PRO CA CB sing N N 243 PRO CA HA sing N N 244 PRO C O doub N N 245 PRO C OXT sing N N 246 PRO CB CG sing N N 247 PRO CB HB2 sing N N 248 PRO CB HB3 sing N N 249 PRO CG CD sing N N 250 PRO CG HG2 sing N N 251 PRO CG HG3 sing N N 252 PRO CD HD2 sing N N 253 PRO CD HD3 sing N N 254 PRO OXT HXT sing N N 255 SER N CA sing N N 256 SER N H sing N N 257 SER N H2 sing N N 258 SER CA C sing N N 259 SER CA CB sing N N 260 SER CA HA sing N N 261 SER C O doub N N 262 SER C OXT sing N N 263 SER CB OG sing N N 264 SER CB HB2 sing N N 265 SER CB HB3 sing N N 266 SER OG HG sing N N 267 SER OXT HXT sing N N 268 THR N CA sing N N 269 THR N H sing N N 270 THR N H2 sing N N 271 THR CA C sing N N 272 THR CA CB sing N N 273 THR CA HA sing N N 274 THR C O doub N N 275 THR C OXT sing N N 276 THR CB OG1 sing N N 277 THR CB CG2 sing N N 278 THR CB HB sing N N 279 THR OG1 HG1 sing N N 280 THR CG2 HG21 sing N N 281 THR CG2 HG22 sing N N 282 THR CG2 HG23 sing N N 283 THR OXT HXT sing N N 284 TRP N CA sing N N 285 TRP N H sing N N 286 TRP N H2 sing N N 287 TRP CA C sing N N 288 TRP CA CB sing N N 289 TRP CA HA sing N N 290 TRP C O doub N N 291 TRP C OXT sing N N 292 TRP CB CG sing N N 293 TRP CB HB2 sing N N 294 TRP CB HB3 sing N N 295 TRP CG CD1 doub Y N 296 TRP CG CD2 sing Y N 297 TRP CD1 NE1 sing Y N 298 TRP CD1 HD1 sing N N 299 TRP CD2 CE2 doub Y N 300 TRP CD2 CE3 sing Y N 301 TRP NE1 CE2 sing Y N 302 TRP NE1 HE1 sing N N 303 TRP CE2 CZ2 sing Y N 304 TRP CE3 CZ3 doub Y N 305 TRP CE3 HE3 sing N N 306 TRP CZ2 CH2 doub Y N 307 TRP CZ2 HZ2 sing N N 308 TRP CZ3 CH2 sing Y N 309 TRP CZ3 HZ3 sing N N 310 TRP CH2 HH2 sing N N 311 TRP OXT HXT sing N N 312 TYR N CA sing N N 313 TYR N H sing N N 314 TYR N H2 sing N N 315 TYR CA C sing N N 316 TYR CA CB sing N N 317 TYR CA HA sing N N 318 TYR C O doub N N 319 TYR C OXT sing N N 320 TYR CB CG sing N N 321 TYR CB HB2 sing N N 322 TYR CB HB3 sing N N 323 TYR CG CD1 doub Y N 324 TYR CG CD2 sing Y N 325 TYR CD1 CE1 sing Y N 326 TYR CD1 HD1 sing N N 327 TYR CD2 CE2 doub Y N 328 TYR CD2 HD2 sing N N 329 TYR CE1 CZ doub Y N 330 TYR CE1 HE1 sing N N 331 TYR CE2 CZ sing Y N 332 TYR CE2 HE2 sing N N 333 TYR CZ OH sing N N 334 TYR OH HH sing N N 335 TYR OXT HXT sing N N 336 VAL N CA sing N N 337 VAL N H sing N N 338 VAL N H2 sing N N 339 VAL CA C sing N N 340 VAL CA CB sing N N 341 VAL CA HA sing N N 342 VAL C O doub N N 343 VAL C OXT sing N N 344 VAL CB CG1 sing N N 345 VAL CB CG2 sing N N 346 VAL CB HB sing N N 347 VAL CG1 HG11 sing N N 348 VAL CG1 HG12 sing N N 349 VAL CG1 HG13 sing N N 350 VAL CG2 HG21 sing N N 351 VAL CG2 HG22 sing N N 352 VAL CG2 HG23 sing N N 353 VAL OXT HXT sing N N 354 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1F6L _pdbx_initial_refinement_model.details 'PDB ENTRY 1F6L' # _atom_sites.entry_id 3UPA _atom_sites.fract_transf_matrix[1][1] 0.022202 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022202 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005772 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_