HEADER TRANSFERASE 18-NOV-11 3UPK TITLE E. CLOACAE MURA IN COMPLEX WITH UNAG COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENOYLPYRUVATE TRANSFERASE, UDP-N-ACETYLGLUCOSAMINE COMPND 5 ENOLPYRUVYL TRANSFERASE, EPT; COMPND 6 EC: 2.5.1.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 GENE: ECL_04571, MURA, MURZ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9D KEYWDS MURA, CLOSE ENZYME STATE, CELL WALL, BIOGENESIS/DEGRADATION, KEYWDS 2 PEPTIDOGLYCAN SYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.-Y.ZHU,Y.YANG,E.SCHONBRUNN REVDAT 5 09-OCT-24 3UPK 1 REMARK REVDAT 4 13-SEP-23 3UPK 1 REMARK LINK REVDAT 3 09-MAY-12 3UPK 1 JRNL REVDAT 2 21-MAR-12 3UPK 1 JRNL REVDAT 1 07-MAR-12 3UPK 0 JRNL AUTH J.Y.ZHU,Y.YANG,H.HAN,S.BETZI,S.H.OLESEN,F.MARSILIO, JRNL AUTH 2 E.SCHONBRUNN JRNL TITL FUNCTIONAL CONSEQUENCE OF COVALENT REACTION OF JRNL TITL 2 PHOSPHOENOLPYRUVATE WITH UDP-N-ACETYLGLUCOSAMINE JRNL TITL 3 1-CARBOXYVINYLTRANSFERASE (MURA). JRNL REF J.BIOL.CHEM. V. 287 12657 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22378791 JRNL DOI 10.1074/JBC.M112.342725 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 6719638.350 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1105 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4741 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 183 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3143 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 12.40 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.060 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.570 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.580 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.640 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 50.44 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3UPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000069048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34900 REMARK 200 R SYM FOR SHELL (I) : 0.28800 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1PW2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MG/ML MURA, 5 MM UNAG, 25 MM HEPES REMARK 280 PH 7.5, 50 MM BIS-TRIS PH 5.5, 12.5 % PEG 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 69.26000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.26000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 69.26000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 69.26000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 69.26000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 69.26000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 69.26000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 69.26000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 69.26000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 69.26000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 69.26000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 69.26000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 69.26000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 69.26000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 69.26000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 69.26000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 69.26000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 69.26000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 69.26000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 69.26000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 69.26000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 69.26000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 69.26000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 69.26000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 69.26000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 69.26000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 69.26000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 69.26000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 69.26000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 69.26000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 69.26000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 69.26000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 69.26000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 69.26000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 69.26000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 69.26000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 494 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 603 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 652 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 418 N - CA - C ANGL. DEV. = -18.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 184 39.82 72.39 REMARK 500 SER A 349 -129.26 55.61 REMARK 500 THR A 368 -16.34 -142.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 371 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 425 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 426 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 A 427 REMARK 999 REMARK 999 IAS67 FORMS AN ISOPEPTIDIC BOND AND IS A RESULT OF REMARK 999 POSTTRANSLATIONAL MODIFICATION OF ASN67 DBREF 3UPK A 1 419 UNP P33038 MURA_ENTCC 1 419 SEQADV 3UPK IAS A 67 UNP P33038 ASN 67 SEE REMARK 999 SEQRES 1 A 419 MET ASP LYS PHE ARG VAL GLN GLY PRO THR ARG LEU GLN SEQRES 2 A 419 GLY GLU VAL THR ILE SER GLY ALA LYS ASN ALA ALA LEU SEQRES 3 A 419 PRO ILE LEU PHE ALA ALA LEU LEU ALA GLU GLU PRO VAL SEQRES 4 A 419 GLU ILE GLN ASN VAL PRO LYS LEU LYS ASP ILE ASP THR SEQRES 5 A 419 THR MET LYS LEU LEU THR GLN LEU GLY THR LYS VAL GLU SEQRES 6 A 419 ARG IAS GLY SER VAL TRP ILE ASP ALA SER ASN VAL ASN SEQRES 7 A 419 ASN PHE SER ALA PRO TYR ASP LEU VAL LYS THR MET ARG SEQRES 8 A 419 ALA SER ILE TRP ALA LEU GLY PRO LEU VAL ALA ARG PHE SEQRES 9 A 419 GLY GLN GLY GLN VAL SER LEU PRO GLY GLY CYS ALA ILE SEQRES 10 A 419 GLY ALA ARG PRO VAL ASP LEU HIS ILE PHE GLY LEU GLU SEQRES 11 A 419 LYS LEU GLY ALA GLU ILE LYS LEU GLU GLU GLY TYR VAL SEQRES 12 A 419 LYS ALA SER VAL ASN GLY ARG LEU LYS GLY ALA HIS ILE SEQRES 13 A 419 VAL MET ASP LYS VAL SER VAL GLY ALA THR VAL THR ILE SEQRES 14 A 419 MET SER ALA ALA THR LEU ALA GLU GLY THR THR ILE ILE SEQRES 15 A 419 GLU ASN ALA ALA ARG GLU PRO GLU ILE VAL ASP THR ALA SEQRES 16 A 419 ASN PHE LEU VAL ALA LEU GLY ALA LYS ILE SER GLY GLN SEQRES 17 A 419 GLY THR ASP ARG ILE THR ILE GLU GLY VAL GLU ARG LEU SEQRES 18 A 419 GLY GLY GLY VAL TYR ARG VAL LEU PRO ASP ARG ILE GLU SEQRES 19 A 419 THR GLY THR PHE LEU VAL ALA ALA ALA ILE SER GLY GLY SEQRES 20 A 419 LYS ILE VAL CYS ARG ASN ALA GLN PRO ASP THR LEU ASP SEQRES 21 A 419 ALA VAL LEU ALA LYS LEU ARG GLU ALA GLY ALA ASP ILE SEQRES 22 A 419 GLU THR GLY GLU ASP TRP ILE SER LEU ASP MET HIS GLY SEQRES 23 A 419 LYS ARG PRO LYS ALA VAL THR VAL ARG THR ALA PRO HIS SEQRES 24 A 419 PRO ALA PHE PRO THR ASP MET GLN ALA GLN PHE THR LEU SEQRES 25 A 419 LEU ASN LEU VAL ALA GLU GLY THR GLY VAL ILE THR GLU SEQRES 26 A 419 THR ILE PHE GLU ASN ARG PHE MET HIS VAL PRO GLU LEU SEQRES 27 A 419 ILE ARG MET GLY ALA HIS ALA GLU ILE GLU SER ASN THR SEQRES 28 A 419 VAL ILE CYS HIS GLY VAL GLU LYS LEU SER GLY ALA GLN SEQRES 29 A 419 VAL MET ALA THR ASP LEU ARG ALA SER ALA SER LEU VAL SEQRES 30 A 419 LEU ALA GLY CYS ILE ALA GLU GLY THR THR VAL VAL ASP SEQRES 31 A 419 ARG ILE TYR HIS ILE ASP ARG GLY TYR GLU ARG ILE GLU SEQRES 32 A 419 ASP LYS LEU ARG ALA LEU GLY ALA ASN ILE GLU ARG VAL SEQRES 33 A 419 LYS GLY GLU HET IAS A 67 8 HET PGE A 420 10 HET EDO A 421 4 HET EDO A 422 4 HET EDO A 423 4 HET EDO A 424 4 HET EDO A 425 4 HET EDO A 426 4 HET UD1 A 427 39 HETNAM IAS BETA-L-ASPARTIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE HETSYN IAS L-ASPARTIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 IAS C4 H7 N O4 FORMUL 2 PGE C6 H14 O4 FORMUL 3 EDO 6(C2 H6 O2) FORMUL 9 UD1 C17 H27 N3 O17 P2 FORMUL 10 HOH *380(H2 O) HELIX 1 1 ALA A 21 ALA A 32 1 12 HELIX 2 2 LEU A 33 ALA A 35 5 3 HELIX 3 3 LEU A 47 LEU A 60 1 14 HELIX 4 4 PRO A 83 LYS A 88 1 6 HELIX 5 5 THR A 89 TRP A 95 5 7 HELIX 6 6 ALA A 96 GLY A 105 1 10 HELIX 7 7 VAL A 122 LEU A 132 1 11 HELIX 8 8 SER A 162 THR A 174 1 13 HELIX 9 9 GLU A 188 LEU A 201 1 14 HELIX 10 10 ASP A 231 SER A 245 1 15 HELIX 11 11 GLN A 255 THR A 258 5 4 HELIX 12 12 LEU A 259 ALA A 269 1 11 HELIX 13 13 PRO A 303 ASP A 305 5 3 HELIX 14 14 MET A 306 VAL A 316 1 11 HELIX 15 15 MET A 333 MET A 341 1 9 HELIX 16 16 SER A 373 ALA A 383 1 11 HELIX 17 17 ILE A 392 TYR A 399 1 8 HELIX 18 18 ARG A 401 ALA A 408 1 8 SHEET 1 A 4 GLN A 364 MET A 366 0 SHEET 2 A 4 GLY A 385 ASP A 390 1 O VAL A 388 N VAL A 365 SHEET 3 A 4 LYS A 3 GLY A 8 -1 N VAL A 6 O THR A 387 SHEET 4 A 4 ASN A 412 VAL A 416 -1 O VAL A 416 N LYS A 3 SHEET 1 B 4 GLN A 13 THR A 17 0 SHEET 2 B 4 LYS A 248 ARG A 252 1 O ARG A 252 N VAL A 16 SHEET 3 B 4 TRP A 279 ASP A 283 -1 O ILE A 280 N CYS A 251 SHEET 4 B 4 ASP A 272 THR A 275 -1 N GLU A 274 O SER A 281 SHEET 1 C 4 LYS A 63 ARG A 66 0 SHEET 2 C 4 VAL A 70 ASP A 73 -1 O TRP A 71 N GLU A 65 SHEET 3 C 4 VAL A 39 GLN A 42 -1 N VAL A 39 O ILE A 72 SHEET 4 C 4 GLY A 224 ARG A 227 1 O TYR A 226 N GLN A 42 SHEET 1 D 4 SER A 81 ALA A 82 0 SHEET 2 D 4 GLN A 106 SER A 110 1 O GLN A 108 N ALA A 82 SHEET 3 D 4 TYR A 142 SER A 146 -1 O VAL A 143 N VAL A 109 SHEET 4 D 4 GLU A 135 GLU A 139 -1 N LYS A 137 O LYS A 144 SHEET 1 E 4 HIS A 155 VAL A 157 0 SHEET 2 E 4 THR A 179 GLU A 183 1 O ILE A 181 N ILE A 156 SHEET 3 E 4 ARG A 212 GLU A 216 -1 O ILE A 215 N THR A 180 SHEET 4 E 4 LYS A 204 SER A 206 -1 N SER A 206 O THR A 214 SHEET 1 F 4 THR A 293 ARG A 295 0 SHEET 2 F 4 THR A 320 THR A 324 1 O THR A 324 N VAL A 294 SHEET 3 F 4 THR A 351 HIS A 355 -1 O CYS A 354 N GLY A 321 SHEET 4 F 4 ALA A 345 GLU A 348 -1 N GLU A 346 O ILE A 353 LINK C ARG A 66 N IAS A 67 1555 1555 1.33 LINK CG IAS A 67 N GLY A 68 1555 1555 1.33 CISPEP 1 GLY A 8 PRO A 9 0 0.57 CISPEP 2 HIS A 299 PRO A 300 0 9.26 SITE 1 AC1 4 GLN A 108 TYR A 142 LYS A 144 HOH A 735 SITE 1 AC2 8 LYS A 22 ARG A 120 LEU A 370 EDO A 422 SITE 2 AC2 8 UD1 A 427 HOH A 475 HOH A 560 HOH A 788 SITE 1 AC3 8 ILE A 94 ARG A 120 HIS A 125 GLY A 164 SITE 2 AC3 8 EDO A 421 UD1 A 427 HOH A 473 HOH A 479 SITE 1 AC4 1 GLU A 177 SITE 1 AC5 2 TYR A 393 HIS A 394 SITE 1 AC6 5 GLY A 114 MET A 333 GLU A 337 MET A 366 SITE 2 AC6 5 HOH A 784 SITE 1 AC7 4 ALA A 102 ARG A 103 ARG A 150 HOH A 787 SITE 1 AC8 30 ASN A 23 TRP A 95 ALA A 119 ARG A 120 SITE 2 AC8 30 PRO A 121 VAL A 122 ASP A 123 LEU A 124 SITE 3 AC8 30 HIS A 125 LYS A 160 SER A 162 VAL A 163 SITE 4 AC8 30 GLY A 164 THR A 304 ASP A 305 ILE A 327 SITE 5 AC8 30 PHE A 328 EDO A 421 EDO A 422 HOH A 473 SITE 6 AC8 30 HOH A 476 HOH A 493 HOH A 509 HOH A 515 SITE 7 AC8 30 HOH A 517 HOH A 520 HOH A 560 HOH A 574 SITE 8 AC8 30 HOH A 595 HOH A 629 CRYST1 138.520 138.520 138.520 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007219 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007219 0.00000