data_3UPS # _entry.id 3UPS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3UPS RCSB RCSB069056 WWPDB D_1000069056 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC100241 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3UPS _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-11-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Li, H.' 2 'Bearden, J.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of iojap-like protein from Zymomonas mobilis' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Li, H.' 2 primary 'Bearden, J.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 75.397 _cell.length_b 75.397 _cell.length_c 66.916 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3UPS _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 3UPS _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 152 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Iojap-like protein' 15063.237 1 ? ? ? ? 2 water nat water 18.015 102 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)PAPSSPRKNQTSFDPE(MSE)LLKLVTDSLDDDQALEIATIPLAGKSSIADY(MSE)VIASGRSSRQVTA (MSE)AQKLADRIKAATGYVSKIEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLER(MSE)WGFGDESDQPVSQSVLS ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMPAPSSPRKNQTSFDPEMLLKLVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIKAATG YVSKIEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMWGFGDESDQPVSQSVLS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC100241 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 PRO n 1 6 ALA n 1 7 PRO n 1 8 SER n 1 9 SER n 1 10 PRO n 1 11 ARG n 1 12 LYS n 1 13 ASN n 1 14 GLN n 1 15 THR n 1 16 SER n 1 17 PHE n 1 18 ASP n 1 19 PRO n 1 20 GLU n 1 21 MSE n 1 22 LEU n 1 23 LEU n 1 24 LYS n 1 25 LEU n 1 26 VAL n 1 27 THR n 1 28 ASP n 1 29 SER n 1 30 LEU n 1 31 ASP n 1 32 ASP n 1 33 ASP n 1 34 GLN n 1 35 ALA n 1 36 LEU n 1 37 GLU n 1 38 ILE n 1 39 ALA n 1 40 THR n 1 41 ILE n 1 42 PRO n 1 43 LEU n 1 44 ALA n 1 45 GLY n 1 46 LYS n 1 47 SER n 1 48 SER n 1 49 ILE n 1 50 ALA n 1 51 ASP n 1 52 TYR n 1 53 MSE n 1 54 VAL n 1 55 ILE n 1 56 ALA n 1 57 SER n 1 58 GLY n 1 59 ARG n 1 60 SER n 1 61 SER n 1 62 ARG n 1 63 GLN n 1 64 VAL n 1 65 THR n 1 66 ALA n 1 67 MSE n 1 68 ALA n 1 69 GLN n 1 70 LYS n 1 71 LEU n 1 72 ALA n 1 73 ASP n 1 74 ARG n 1 75 ILE n 1 76 LYS n 1 77 ALA n 1 78 ALA n 1 79 THR n 1 80 GLY n 1 81 TYR n 1 82 VAL n 1 83 SER n 1 84 LYS n 1 85 ILE n 1 86 GLU n 1 87 GLY n 1 88 LEU n 1 89 PRO n 1 90 ALA n 1 91 ALA n 1 92 ASP n 1 93 TRP n 1 94 VAL n 1 95 LEU n 1 96 LEU n 1 97 ASP n 1 98 ALA n 1 99 GLY n 1 100 ASP n 1 101 ILE n 1 102 ILE n 1 103 ILE n 1 104 HIS n 1 105 LEU n 1 106 PHE n 1 107 ARG n 1 108 PRO n 1 109 GLU n 1 110 VAL n 1 111 ARG n 1 112 SER n 1 113 PHE n 1 114 TYR n 1 115 ASN n 1 116 LEU n 1 117 GLU n 1 118 ARG n 1 119 MSE n 1 120 TRP n 1 121 GLY n 1 122 PHE n 1 123 GLY n 1 124 ASP n 1 125 GLU n 1 126 SER n 1 127 ASP n 1 128 GLN n 1 129 PRO n 1 130 VAL n 1 131 SER n 1 132 GLN n 1 133 SER n 1 134 VAL n 1 135 LEU n 1 136 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ZMO1663 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ZM4 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Zymomonas mobilis subsp. mobilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 264203 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5NLX3_ZYMMO _struct_ref.pdbx_db_accession Q5NLX3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MPAPSSPRKNQTSFDPEMLLKLVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIKAATGYVS KIEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMWGFGDESDQPVSQSVLS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3UPS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 136 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5NLX3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 133 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 133 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UPS SER A 1 ? UNP Q5NLX3 ? ? 'EXPRESSION TAG' -2 1 1 3UPS ASN A 2 ? UNP Q5NLX3 ? ? 'EXPRESSION TAG' -1 2 1 3UPS ALA A 3 ? UNP Q5NLX3 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3UPS _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.64 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 66.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.2 M LIthium sulfate, 0.1 M phosphate-citrate, 20% PEG1000, pH 4.2, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-11-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111) double crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97904 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 18-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97904 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 18-ID # _reflns.entry_id 3UPS _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.75 _reflns.d_resolution_low 50 _reflns.number_all 22836 _reflns.number_obs 22680 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 36.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.987 _reflns_shell.meanI_over_sigI_obs 2.37 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 10.7 _reflns_shell.number_unique_all 568 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3UPS _refine.ls_d_res_high 1.7500 _refine.ls_d_res_low 50 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6900 _refine.ls_number_reflns_obs 22405 _refine.ls_number_reflns_all 22405 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all 0.1635 _refine.ls_R_factor_obs 0.1635 _refine.ls_R_factor_R_work 0.1620 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1926 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1140 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 39.7958 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.6100 _refine.aniso_B[2][2] 0.6100 _refine.aniso_B[3][3] -0.9100 _refine.aniso_B[1][2] 0.3000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9700 _refine.correlation_coeff_Fo_to_Fc_free 0.9660 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.0740 _refine.overall_SU_ML 0.0450 _refine.overall_SU_B 3.0460 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 119.690 _refine.B_iso_min 24.580 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 836 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 938 _refine_hist.d_res_high 1.7500 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 897 0.015 0.019 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1220 1.700 1.972 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 117 6.165 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 36 43.243 23.611 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 160 14.732 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 24.439 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 138 0.108 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 674 0.007 0.021 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 897 4.924 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 33 27.994 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 945 19.988 5.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.7530 _refine_ls_shell.d_res_low 1.7980 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.9200 _refine_ls_shell.number_reflns_R_work 1410 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2430 _refine_ls_shell.R_factor_R_free 0.3410 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 70 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1480 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3UPS _struct.title 'Crystal structure of iojap-like protein from Zymomonas mobilis' _struct.pdbx_descriptor 'Iojap-like protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UPS _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown Function' _struct_keywords.text 'PSI-BIOLOGY, MCSG, MIDWEST CENTER FOR STRUCTURAL GENOMICS, unknown function, Structural Genomics' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'vector (x,y,z), (x-y,-y,-z+2/3)' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 18 ? ASP A 33 ? ASP A 15 ASP A 30 1 ? 16 HELX_P HELX_P2 2 SER A 60 ? GLY A 80 ? SER A 57 GLY A 77 1 ? 21 HELX_P HELX_P3 3 ARG A 107 ? TRP A 120 ? ARG A 104 TRP A 117 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLU 20 C ? ? ? 1_555 A MSE 21 N A ? A GLU 17 A MSE 18 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale ? ? A GLU 20 C ? ? ? 1_555 A MSE 21 N B ? A GLU 17 A MSE 18 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A MSE 21 C A ? ? 1_555 A LEU 22 N ? ? A MSE 18 A LEU 19 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale ? ? A MSE 21 C B ? ? 1_555 A LEU 22 N ? ? A MSE 18 A LEU 19 1_555 ? ? ? ? ? ? ? 1.340 ? covale5 covale ? ? A TYR 52 C ? ? ? 1_555 A MSE 53 N A ? A TYR 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A TYR 52 C ? ? ? 1_555 A MSE 53 N B ? A TYR 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.339 ? covale7 covale ? ? A MSE 53 C A ? ? 1_555 A VAL 54 N ? ? A MSE 50 A VAL 51 1_555 ? ? ? ? ? ? ? 1.333 ? covale8 covale ? ? A MSE 53 C B ? ? 1_555 A VAL 54 N ? ? A MSE 50 A VAL 51 1_555 ? ? ? ? ? ? ? 1.335 ? covale9 covale ? ? A ALA 66 C ? ? ? 1_555 A MSE 67 N A ? A ALA 63 A MSE 64 1_555 ? ? ? ? ? ? ? 1.331 ? covale10 covale ? ? A ALA 66 C ? ? ? 1_555 A MSE 67 N B ? A ALA 63 A MSE 64 1_555 ? ? ? ? ? ? ? 1.338 ? covale11 covale ? ? A MSE 67 C A ? ? 1_555 A ALA 68 N ? ? A MSE 64 A ALA 65 1_555 ? ? ? ? ? ? ? 1.329 ? covale12 covale ? ? A MSE 67 C B ? ? 1_555 A ALA 68 N ? ? A MSE 64 A ALA 65 1_555 ? ? ? ? ? ? ? 1.329 ? covale13 covale ? ? A ARG 118 C ? ? ? 1_555 A MSE 119 N ? ? A ARG 115 A MSE 116 1_555 ? ? ? ? ? ? ? 1.340 ? covale14 covale ? ? A MSE 119 C ? ? ? 1_555 A TRP 120 N ? ? A MSE 116 A TRP 117 1_555 ? ? ? ? ? ? ? 1.345 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 88 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 85 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 89 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 86 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.77 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 36 ? PRO A 42 ? LEU A 33 PRO A 39 A 2 TYR A 52 ? SER A 57 ? TYR A 49 SER A 54 A 3 ILE A 101 ? PHE A 106 ? ILE A 98 PHE A 103 A 4 TRP A 93 ? ASP A 97 ? TRP A 90 ASP A 94 A 5 LYS A 84 ? GLU A 86 ? LYS A 81 GLU A 83 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 39 ? N ALA A 36 O ILE A 55 ? O ILE A 52 A 2 3 N VAL A 54 ? N VAL A 51 O HIS A 104 ? O HIS A 101 A 3 4 O LEU A 105 ? O LEU A 102 N VAL A 94 ? N VAL A 91 A 4 5 O ASP A 97 ? O ASP A 94 N LYS A 84 ? N LYS A 81 # _atom_sites.entry_id 3UPS _atom_sites.fract_transf_matrix[1][1] 0.013263 _atom_sites.fract_transf_matrix[1][2] 0.007657 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015315 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014944 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 PRO 5 2 ? ? ? A . n A 1 6 ALA 6 3 ? ? ? A . n A 1 7 PRO 7 4 ? ? ? A . n A 1 8 SER 8 5 ? ? ? A . n A 1 9 SER 9 6 ? ? ? A . n A 1 10 PRO 10 7 ? ? ? A . n A 1 11 ARG 11 8 ? ? ? A . n A 1 12 LYS 12 9 ? ? ? A . n A 1 13 ASN 13 10 ? ? ? A . n A 1 14 GLN 14 11 ? ? ? A . n A 1 15 THR 15 12 ? ? ? A . n A 1 16 SER 16 13 ? ? ? A . n A 1 17 PHE 17 14 14 PHE PHE A . n A 1 18 ASP 18 15 15 ASP ASP A . n A 1 19 PRO 19 16 16 PRO PRO A . n A 1 20 GLU 20 17 17 GLU GLU A . n A 1 21 MSE 21 18 18 MSE MSE A . n A 1 22 LEU 22 19 19 LEU LEU A . n A 1 23 LEU 23 20 20 LEU LEU A . n A 1 24 LYS 24 21 21 LYS LYS A . n A 1 25 LEU 25 22 22 LEU LEU A . n A 1 26 VAL 26 23 23 VAL VAL A . n A 1 27 THR 27 24 24 THR THR A . n A 1 28 ASP 28 25 25 ASP ASP A . n A 1 29 SER 29 26 26 SER SER A . n A 1 30 LEU 30 27 27 LEU LEU A . n A 1 31 ASP 31 28 28 ASP ASP A . n A 1 32 ASP 32 29 29 ASP ASP A . n A 1 33 ASP 33 30 30 ASP ASP A . n A 1 34 GLN 34 31 31 GLN GLN A . n A 1 35 ALA 35 32 32 ALA ALA A . n A 1 36 LEU 36 33 33 LEU LEU A . n A 1 37 GLU 37 34 34 GLU GLU A . n A 1 38 ILE 38 35 35 ILE ILE A . n A 1 39 ALA 39 36 36 ALA ALA A . n A 1 40 THR 40 37 37 THR THR A . n A 1 41 ILE 41 38 38 ILE ILE A . n A 1 42 PRO 42 39 39 PRO PRO A . n A 1 43 LEU 43 40 40 LEU LEU A . n A 1 44 ALA 44 41 41 ALA ALA A . n A 1 45 GLY 45 42 42 GLY GLY A . n A 1 46 LYS 46 43 43 LYS LYS A . n A 1 47 SER 47 44 44 SER SER A . n A 1 48 SER 48 45 45 SER SER A . n A 1 49 ILE 49 46 46 ILE ILE A . n A 1 50 ALA 50 47 47 ALA ALA A . n A 1 51 ASP 51 48 48 ASP ASP A . n A 1 52 TYR 52 49 49 TYR TYR A . n A 1 53 MSE 53 50 50 MSE MSE A . n A 1 54 VAL 54 51 51 VAL VAL A . n A 1 55 ILE 55 52 52 ILE ILE A . n A 1 56 ALA 56 53 53 ALA ALA A . n A 1 57 SER 57 54 54 SER SER A . n A 1 58 GLY 58 55 55 GLY GLY A . n A 1 59 ARG 59 56 56 ARG ARG A . n A 1 60 SER 60 57 57 SER SER A . n A 1 61 SER 61 58 58 SER SER A . n A 1 62 ARG 62 59 59 ARG ARG A . n A 1 63 GLN 63 60 60 GLN GLN A . n A 1 64 VAL 64 61 61 VAL VAL A . n A 1 65 THR 65 62 62 THR THR A . n A 1 66 ALA 66 63 63 ALA ALA A . n A 1 67 MSE 67 64 64 MSE MSE A . n A 1 68 ALA 68 65 65 ALA ALA A . n A 1 69 GLN 69 66 66 GLN GLN A . n A 1 70 LYS 70 67 67 LYS LYS A . n A 1 71 LEU 71 68 68 LEU LEU A . n A 1 72 ALA 72 69 69 ALA ALA A . n A 1 73 ASP 73 70 70 ASP ASP A . n A 1 74 ARG 74 71 71 ARG ARG A . n A 1 75 ILE 75 72 72 ILE ILE A . n A 1 76 LYS 76 73 73 LYS LYS A . n A 1 77 ALA 77 74 74 ALA ALA A . n A 1 78 ALA 78 75 75 ALA ALA A . n A 1 79 THR 79 76 76 THR THR A . n A 1 80 GLY 80 77 77 GLY GLY A . n A 1 81 TYR 81 78 78 TYR TYR A . n A 1 82 VAL 82 79 79 VAL VAL A . n A 1 83 SER 83 80 80 SER SER A . n A 1 84 LYS 84 81 81 LYS LYS A . n A 1 85 ILE 85 82 82 ILE ILE A . n A 1 86 GLU 86 83 83 GLU GLU A . n A 1 87 GLY 87 84 84 GLY GLY A . n A 1 88 LEU 88 85 85 LEU LEU A . n A 1 89 PRO 89 86 86 PRO PRO A . n A 1 90 ALA 90 87 87 ALA ALA A . n A 1 91 ALA 91 88 88 ALA ALA A . n A 1 92 ASP 92 89 89 ASP ASP A . n A 1 93 TRP 93 90 90 TRP TRP A . n A 1 94 VAL 94 91 91 VAL VAL A . n A 1 95 LEU 95 92 92 LEU LEU A . n A 1 96 LEU 96 93 93 LEU LEU A . n A 1 97 ASP 97 94 94 ASP ASP A . n A 1 98 ALA 98 95 95 ALA ALA A . n A 1 99 GLY 99 96 96 GLY GLY A . n A 1 100 ASP 100 97 97 ASP ASP A . n A 1 101 ILE 101 98 98 ILE ILE A . n A 1 102 ILE 102 99 99 ILE ILE A . n A 1 103 ILE 103 100 100 ILE ILE A . n A 1 104 HIS 104 101 101 HIS HIS A . n A 1 105 LEU 105 102 102 LEU LEU A . n A 1 106 PHE 106 103 103 PHE PHE A . n A 1 107 ARG 107 104 104 ARG ARG A . n A 1 108 PRO 108 105 105 PRO PRO A . n A 1 109 GLU 109 106 106 GLU GLU A . n A 1 110 VAL 110 107 107 VAL VAL A . n A 1 111 ARG 111 108 108 ARG ARG A . n A 1 112 SER 112 109 109 SER SER A . n A 1 113 PHE 113 110 110 PHE PHE A . n A 1 114 TYR 114 111 111 TYR TYR A . n A 1 115 ASN 115 112 112 ASN ASN A . n A 1 116 LEU 116 113 113 LEU LEU A . n A 1 117 GLU 117 114 114 GLU GLU A . n A 1 118 ARG 118 115 115 ARG ARG A . n A 1 119 MSE 119 116 116 MSE MSE A . n A 1 120 TRP 120 117 117 TRP TRP A . n A 1 121 GLY 121 118 118 GLY GLY A . n A 1 122 PHE 122 119 119 PHE PHE A . n A 1 123 GLY 123 120 120 GLY GLY A . n A 1 124 ASP 124 121 121 ASP ASP A . n A 1 125 GLU 125 122 ? ? ? A . n A 1 126 SER 126 123 ? ? ? A . n A 1 127 ASP 127 124 ? ? ? A . n A 1 128 GLN 128 125 ? ? ? A . n A 1 129 PRO 129 126 ? ? ? A . n A 1 130 VAL 130 127 ? ? ? A . n A 1 131 SER 131 128 ? ? ? A . n A 1 132 GLN 132 129 ? ? ? A . n A 1 133 SER 133 130 ? ? ? A . n A 1 134 VAL 134 131 ? ? ? A . n A 1 135 LEU 135 132 ? ? ? A . n A 1 136 SER 136 133 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 21 A MSE 18 ? MET SELENOMETHIONINE 2 A MSE 53 A MSE 50 ? MET SELENOMETHIONINE 3 A MSE 67 A MSE 64 ? MET SELENOMETHIONINE 4 A MSE 119 A MSE 116 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2840 ? 1 MORE -15 ? 1 'SSA (A^2)' 10140 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 44.6106666667 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2011-12-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 45.7455 -12.9458 11.9791 0.0355 0.0306 0.0177 -0.0015 0.0002 -0.0027 0.0921 0.4759 0.5885 -0.1917 0.0433 -0.2918 0.0081 0.0131 -0.0212 -0.0073 0.0141 -0.0185 -0.0081 -0.0009 -0.0266 'X-RAY DIFFRACTION' 2 ? refined 48.1984 -4.5164 19.1249 0.0322 0.0117 0.0292 -0.0089 0.0024 -0.0091 1.3199 2.0855 1.3752 -0.6238 -0.5855 -1.1359 -0.0100 -0.0332 0.0431 0.0315 -0.0016 -0.0585 -0.1563 0.1347 -0.0007 'X-RAY DIFFRACTION' 3 ? refined 36.9072 -2.3671 8.0491 0.0410 0.0396 0.0159 0.0029 -0.0011 0.0027 0.0939 0.0205 0.1723 0.0326 -0.0017 0.0381 0.0090 0.0028 -0.0118 0.0143 -0.0025 -0.0048 -0.0021 -0.0307 -0.0246 'X-RAY DIFFRACTION' 4 ? refined 35.8854 -16.0322 14.6603 0.0380 0.0370 0.0154 -0.0007 0.0010 -0.0016 0.1011 0.1855 0.1856 -0.1173 0.0054 -0.1014 0.0169 0.0032 -0.0202 0.0014 0.0000 0.0097 -0.0179 0.0055 -0.0080 'X-RAY DIFFRACTION' 5 ? refined 30.4870 -0.9767 15.6455 0.1436 0.2363 0.3608 0.1535 0.0126 -0.0727 0.7703 22.4699 12.4583 3.5812 -2.0943 -15.9771 -0.0052 0.3722 -0.3671 -0.0131 0.4450 1.2930 -0.2455 0.1376 -0.5449 'X-RAY DIFFRACTION' 6 ? refined 39.6223 -6.3775 19.1915 0.0392 0.0320 0.0143 0.0027 0.0004 -0.0001 0.2045 0.6152 0.4238 -0.2983 0.1535 -0.4590 0.0022 -0.0069 0.0047 0.0161 0.0015 -0.0067 0.0059 -0.0036 -0.0083 'X-RAY DIFFRACTION' 7 ? refined 34.2905 14.0342 15.2218 0.0284 0.0293 0.0104 -0.0101 0.0062 0.0082 1.0904 4.2625 1.6905 -1.4285 0.2873 1.5884 -0.0031 -0.0282 0.0313 -0.0583 -0.0423 0.1051 0.0097 0.0054 -0.1003 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 14 A 30 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 31 A 49 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 50 A 67 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 68 A 80 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 81 A 91 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 A 92 A 102 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 A 103 A 121 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 4 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 6 HKL-3000 . ? ? ? ? phasing ? ? ? 7 MLPHARE . ? ? ? ? phasing ? ? ? 8 DM . ? ? ? ? phasing ? ? ? 9 SHELXDE . ? ? ? ? phasing ? ? ? 10 ARP/wARP . ? ? ? ? 'model building' ? ? ? 11 Coot . ? ? ? ? 'model building' ? ? ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 15 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 15 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CB _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 15 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.61 _pdbx_validate_rmsd_angle.angle_target_value 110.60 _pdbx_validate_rmsd_angle.angle_deviation -10.99 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.80 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A PRO 2 ? A PRO 5 6 1 Y 1 A ALA 3 ? A ALA 6 7 1 Y 1 A PRO 4 ? A PRO 7 8 1 Y 1 A SER 5 ? A SER 8 9 1 Y 1 A SER 6 ? A SER 9 10 1 Y 1 A PRO 7 ? A PRO 10 11 1 Y 1 A ARG 8 ? A ARG 11 12 1 Y 1 A LYS 9 ? A LYS 12 13 1 Y 1 A ASN 10 ? A ASN 13 14 1 Y 1 A GLN 11 ? A GLN 14 15 1 Y 1 A THR 12 ? A THR 15 16 1 Y 1 A SER 13 ? A SER 16 17 1 Y 1 A GLU 122 ? A GLU 125 18 1 Y 1 A SER 123 ? A SER 126 19 1 Y 1 A ASP 124 ? A ASP 127 20 1 Y 1 A GLN 125 ? A GLN 128 21 1 Y 1 A PRO 126 ? A PRO 129 22 1 Y 1 A VAL 127 ? A VAL 130 23 1 Y 1 A SER 128 ? A SER 131 24 1 Y 1 A GLN 129 ? A GLN 132 25 1 Y 1 A SER 130 ? A SER 133 26 1 Y 1 A VAL 131 ? A VAL 134 27 1 Y 1 A LEU 132 ? A LEU 135 28 1 Y 1 A SER 133 ? A SER 136 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 134 1 HOH HOH A . B 2 HOH 2 135 2 HOH HOH A . B 2 HOH 3 136 3 HOH HOH A . B 2 HOH 4 137 4 HOH HOH A . B 2 HOH 5 138 5 HOH HOH A . B 2 HOH 6 139 6 HOH HOH A . B 2 HOH 7 140 7 HOH HOH A . B 2 HOH 8 141 8 HOH HOH A . B 2 HOH 9 142 9 HOH HOH A . B 2 HOH 10 143 10 HOH HOH A . B 2 HOH 11 144 11 HOH HOH A . B 2 HOH 12 145 12 HOH HOH A . B 2 HOH 13 146 13 HOH HOH A . B 2 HOH 14 147 14 HOH HOH A . B 2 HOH 15 148 15 HOH HOH A . B 2 HOH 16 149 16 HOH HOH A . B 2 HOH 17 150 17 HOH HOH A . B 2 HOH 18 151 18 HOH HOH A . B 2 HOH 19 152 19 HOH HOH A . B 2 HOH 20 153 20 HOH HOH A . B 2 HOH 21 154 21 HOH HOH A . B 2 HOH 22 155 22 HOH HOH A . B 2 HOH 23 156 23 HOH HOH A . B 2 HOH 24 157 24 HOH HOH A . B 2 HOH 25 158 25 HOH HOH A . B 2 HOH 26 159 26 HOH HOH A . B 2 HOH 27 160 27 HOH HOH A . B 2 HOH 28 161 28 HOH HOH A . B 2 HOH 29 162 29 HOH HOH A . B 2 HOH 30 163 30 HOH HOH A . B 2 HOH 31 164 31 HOH HOH A . B 2 HOH 32 165 32 HOH HOH A . B 2 HOH 33 166 33 HOH HOH A . B 2 HOH 34 167 34 HOH HOH A . B 2 HOH 35 168 35 HOH HOH A . B 2 HOH 36 169 36 HOH HOH A . B 2 HOH 37 170 37 HOH HOH A . B 2 HOH 38 171 38 HOH HOH A . B 2 HOH 39 172 39 HOH HOH A . B 2 HOH 40 173 40 HOH HOH A . B 2 HOH 41 174 41 HOH HOH A . B 2 HOH 42 175 42 HOH HOH A . B 2 HOH 43 176 43 HOH HOH A . B 2 HOH 44 177 44 HOH HOH A . B 2 HOH 45 178 45 HOH HOH A . B 2 HOH 46 179 46 HOH HOH A . B 2 HOH 47 180 47 HOH HOH A . B 2 HOH 48 181 48 HOH HOH A . B 2 HOH 49 182 49 HOH HOH A . B 2 HOH 50 183 50 HOH HOH A . B 2 HOH 51 184 51 HOH HOH A . B 2 HOH 52 185 52 HOH HOH A . B 2 HOH 53 186 53 HOH HOH A . B 2 HOH 54 187 54 HOH HOH A . B 2 HOH 55 188 55 HOH HOH A . B 2 HOH 56 189 56 HOH HOH A . B 2 HOH 57 190 57 HOH HOH A . B 2 HOH 58 191 58 HOH HOH A . B 2 HOH 59 192 59 HOH HOH A . B 2 HOH 60 193 60 HOH HOH A . B 2 HOH 61 194 61 HOH HOH A . B 2 HOH 62 195 62 HOH HOH A . B 2 HOH 63 196 63 HOH HOH A . B 2 HOH 64 197 64 HOH HOH A . B 2 HOH 65 198 65 HOH HOH A . B 2 HOH 66 199 66 HOH HOH A . B 2 HOH 67 200 67 HOH HOH A . B 2 HOH 68 201 68 HOH HOH A . B 2 HOH 69 202 69 HOH HOH A . B 2 HOH 70 203 70 HOH HOH A . B 2 HOH 71 204 71 HOH HOH A . B 2 HOH 72 205 72 HOH HOH A . B 2 HOH 73 206 73 HOH HOH A . B 2 HOH 74 207 74 HOH HOH A . B 2 HOH 75 208 75 HOH HOH A . B 2 HOH 76 209 76 HOH HOH A . B 2 HOH 77 210 77 HOH HOH A . B 2 HOH 78 211 78 HOH HOH A . B 2 HOH 79 212 79 HOH HOH A . B 2 HOH 80 213 80 HOH HOH A . B 2 HOH 81 214 81 HOH HOH A . B 2 HOH 82 215 82 HOH HOH A . B 2 HOH 83 216 83 HOH HOH A . B 2 HOH 84 217 84 HOH HOH A . B 2 HOH 85 218 85 HOH HOH A . B 2 HOH 86 219 86 HOH HOH A . B 2 HOH 87 220 87 HOH HOH A . B 2 HOH 88 221 88 HOH HOH A . B 2 HOH 89 222 89 HOH HOH A . B 2 HOH 90 223 90 HOH HOH A . B 2 HOH 91 224 91 HOH HOH A . B 2 HOH 92 225 92 HOH HOH A . B 2 HOH 93 226 93 HOH HOH A . B 2 HOH 94 227 94 HOH HOH A . B 2 HOH 95 228 95 HOH HOH A . B 2 HOH 96 229 96 HOH HOH A . B 2 HOH 97 230 97 HOH HOH A . B 2 HOH 98 231 98 HOH HOH A . B 2 HOH 99 232 99 HOH HOH A . B 2 HOH 100 233 100 HOH HOH A . B 2 HOH 101 234 101 HOH HOH A . B 2 HOH 102 235 102 HOH HOH A . #