HEADER OXIDOREDUCTASE 18-NOV-11 3UPW TITLE PICHIA STIPITIS OYE2.6 COMPLEXED WITH NICOTINAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLD YELLOW ENZYME 2.6 (OYE2.6), NADPH DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.6.99.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHEFFERSOMYCES STIPITIS; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 322104; SOURCE 5 STRAIN: ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545; SOURCE 6 GENE: OYE2.6, PICST_44614; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-22B KEYWDS OYE, OLD YELLOW ENZYME, FMN, OXIDOREDUCTASE, ALKENE REDUCTASE, KEYWDS 2 ASSYMETRIC ALKENE REDUCTION, OYE1 HOMOLOGUE, TIM BARREL, NADPH KEYWDS 3 OXIDOREDUCTASE, NAD(P)H EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.POMPEU,J.D.STEWART REVDAT 3 13-SEP-23 3UPW 1 REMARK SEQADV LINK REVDAT 2 29-APR-15 3UPW 1 HETSYN REVDAT 1 11-JUL-12 3UPW 0 JRNL AUTH Y.A.POMPEU,B.SULLIVAN,A.Z.WALTON,J.D.STEWART JRNL TITL STRUCTURAL AND CATALYTIC CHARACTERIZATION OF PICHIA STIPITIS JRNL TITL 2 OYE 2.6, A USEFUL BIOCATALYST FOR ASYMMETRIC ALKENE JRNL TITL 3 REDUCTIONS JRNL REF ADV.SYNTH.CATAL. 2012 JRNL REFN ESSN 1615-4169 JRNL DOI 10.1002/ADSC.201200213 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 54454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2542 - 5.5303 1.00 1891 210 0.1792 0.1992 REMARK 3 2 5.5303 - 4.3908 1.00 1781 198 0.1308 0.1314 REMARK 3 3 4.3908 - 3.8361 1.00 1753 195 0.1135 0.1508 REMARK 3 4 3.8361 - 3.4856 1.00 1739 194 0.1312 0.1692 REMARK 3 5 3.4856 - 3.2358 1.00 1712 190 0.1433 0.1722 REMARK 3 6 3.2358 - 3.0451 1.00 1714 190 0.1589 0.1886 REMARK 3 7 3.0451 - 2.8926 1.00 1710 190 0.1712 0.2004 REMARK 3 8 2.8926 - 2.7667 1.00 1702 189 0.1747 0.2068 REMARK 3 9 2.7667 - 2.6602 1.00 1703 190 0.1828 0.2090 REMARK 3 10 2.6602 - 2.5684 1.00 1689 187 0.1691 0.1852 REMARK 3 11 2.5684 - 2.4881 1.00 1706 190 0.1606 0.1866 REMARK 3 12 2.4881 - 2.4170 1.00 1686 188 0.1547 0.1837 REMARK 3 13 2.4170 - 2.3534 1.00 1687 186 0.1518 0.1612 REMARK 3 14 2.3534 - 2.2960 1.00 1680 187 0.1554 0.1939 REMARK 3 15 2.2960 - 2.2438 1.00 1685 188 0.1578 0.1884 REMARK 3 16 2.2438 - 2.1960 1.00 1680 186 0.1485 0.1822 REMARK 3 17 2.1960 - 2.1521 1.00 1692 188 0.1484 0.1733 REMARK 3 18 2.1521 - 2.1115 1.00 1675 186 0.1587 0.1804 REMARK 3 19 2.1115 - 2.0738 1.00 1680 188 0.1641 0.1882 REMARK 3 20 2.0738 - 2.0386 1.00 1665 183 0.1633 0.1993 REMARK 3 21 2.0386 - 2.0057 1.00 1677 187 0.1572 0.2121 REMARK 3 22 2.0057 - 1.9749 1.00 1689 188 0.1624 0.2059 REMARK 3 23 1.9749 - 1.9458 1.00 1653 184 0.1692 0.2217 REMARK 3 24 1.9458 - 1.9184 1.00 1685 187 0.1815 0.2184 REMARK 3 25 1.9184 - 1.8925 1.00 1662 184 0.1920 0.2380 REMARK 3 26 1.8925 - 1.8679 1.00 1658 185 0.1910 0.2176 REMARK 3 27 1.8679 - 1.8446 1.00 1658 184 0.1995 0.2330 REMARK 3 28 1.8446 - 1.8224 1.00 1665 185 0.2328 0.2734 REMARK 3 29 1.8224 - 1.8012 0.98 1650 184 0.2504 0.3080 REMARK 3 30 1.8012 - 1.7809 0.96 1608 178 0.2862 0.3032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 44.74 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.78350 REMARK 3 B22 (A**2) : -0.78350 REMARK 3 B33 (A**2) : 1.56700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3350 REMARK 3 ANGLE : 1.049 4567 REMARK 3 CHIRALITY : 0.074 504 REMARK 3 PLANARITY : 0.004 595 REMARK 3 DIHEDRAL : 15.053 1236 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000069060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54454 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 37.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1OYA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M NA MALONATE, 2%IPROH, PH 7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.53200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.53200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.53200 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.53200 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.53200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 61.53200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 460 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 526 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 652 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 656 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 406 REMARK 465 LEU A 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 139 O HOH A 853 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 43 3.63 85.65 REMARK 500 ALA A 252 -124.48 61.67 REMARK 500 ASN A 354 34.37 -93.95 REMARK 500 TYR A 381 -79.17 -108.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 415 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 104 OD1 REMARK 620 2 HOH A 747 O 89.1 REMARK 620 3 HOH A 816 O 172.5 96.3 REMARK 620 4 HOH A 850 O 74.4 161.5 99.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 414 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 196 OD2 REMARK 620 2 SER A 242 OG 105.1 REMARK 620 3 SER A 242 O 133.6 55.8 REMARK 620 4 HOH A 501 O 115.4 125.3 69.6 REMARK 620 5 HOH A 505 O 100.0 97.1 122.4 109.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 416 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 335 O REMARK 620 2 ASP A 338 OD2 125.3 REMARK 620 3 THR A 341 OG1 73.5 72.5 REMARK 620 4 HOH A 752 O 81.6 83.5 124.0 REMARK 620 5 HOH A 802 O 114.2 79.8 57.2 161.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 413 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 417 O REMARK 620 2 HOH A 421 O 106.2 REMARK 620 3 HOH A 755 O 77.3 167.9 REMARK 620 4 HOH A 791 O 168.2 84.2 91.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCA A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TJL RELATED DB: PDB REMARK 900 SAME ENZYME COMPLEXED WITH MALONIC ACID REMARK 900 RELATED ID: 4DF2 RELATED DB: PDB REMARK 900 RELATED ID: 1OYA RELATED DB: PDB DBREF 3UPW A 1 407 UNP A3LT82 A3LT82_PICST 1 407 SEQADV 3UPW ALA A 169 UNP A3LT82 THR 169 CLONING ARTIFACT SEQRES 1 A 407 MET SER SER VAL LYS ILE SER PRO LEU LYS ASP SER GLU SEQRES 2 A 407 ALA PHE GLN SER ILE LYS VAL GLY ASN ASN THR LEU GLN SEQRES 3 A 407 THR LYS ILE VAL TYR PRO PRO THR THR ARG PHE ARG ALA SEQRES 4 A 407 LEU GLU ASP HIS THR PRO SER ASP LEU GLN LEU GLN TYR SEQRES 5 A 407 TYR GLY ASP ARG SER THR PHE PRO GLY THR LEU LEU ILE SEQRES 6 A 407 THR GLU ALA THR PHE VAL SER PRO GLN ALA SER GLY TYR SEQRES 7 A 407 GLU GLY ALA ALA PRO GLY ILE TRP THR ASP LYS HIS ALA SEQRES 8 A 407 LYS ALA TRP LYS VAL ILE THR ASP LYS VAL HIS ALA ASN SEQRES 9 A 407 GLY SER PHE VAL SER THR GLN LEU ILE PHE LEU GLY ARG SEQRES 10 A 407 VAL ALA ASP PRO ALA VAL MET LYS THR ARG GLY LEU ASN SEQRES 11 A 407 PRO VAL SER ALA SER ALA THR TYR GLU SER ASP ALA ALA SEQRES 12 A 407 LYS GLU ALA ALA GLU ALA VAL GLY ASN PRO VAL ARG ALA SEQRES 13 A 407 LEU THR THR GLN GLU VAL LYS ASP LEU VAL TYR GLU ALA SEQRES 14 A 407 TYR THR ASN ALA ALA GLN LYS ALA MET ASP ALA GLY PHE SEQRES 15 A 407 ASP TYR ILE GLU LEU HIS ALA ALA HIS GLY TYR LEU LEU SEQRES 16 A 407 ASP GLN PHE LEU GLN PRO CYS THR ASN GLN ARG THR ASP SEQRES 17 A 407 GLU TYR GLY GLY SER ILE GLU ASN ARG ALA ARG LEU ILE SEQRES 18 A 407 LEU GLU LEU ILE ASP HIS LEU SER THR ILE VAL GLY ALA SEQRES 19 A 407 ASP LYS ILE GLY ILE ARG ILE SER PRO TRP ALA THR PHE SEQRES 20 A 407 GLN ASN MET LYS ALA HIS LYS ASP THR VAL HIS PRO LEU SEQRES 21 A 407 THR THR PHE SER TYR LEU VAL HIS GLU LEU GLN GLN ARG SEQRES 22 A 407 ALA ASP LYS GLY GLN GLY ILE ALA TYR ILE SER VAL VAL SEQRES 23 A 407 GLU PRO ARG VAL SER GLY ASN VAL ASP VAL SER GLU GLU SEQRES 24 A 407 ASP GLN ALA GLY ASP ASN GLU PHE VAL SER LYS ILE TRP SEQRES 25 A 407 LYS GLY VAL ILE LEU LYS ALA GLY ASN TYR SER TYR ASP SEQRES 26 A 407 ALA PRO GLU PHE LYS THR LEU LYS GLU ASP ILE ALA ASP SEQRES 27 A 407 LYS ARG THR LEU VAL GLY PHE SER ARG TYR PHE THR SER SEQRES 28 A 407 ASN PRO ASN LEU VAL TRP LYS LEU ARG ASP GLY ILE ASP SEQRES 29 A 407 LEU VAL PRO TYR ASP ARG ASN THR PHE TYR SER ASP ASN SEQRES 30 A 407 ASN TYR GLY TYR ASN THR PHE SER MET ASP SER GLU GLU SEQRES 31 A 407 VAL ASP LYS GLU LEU GLU ILE LYS ARG VAL PRO SER ALA SEQRES 32 A 407 ILE GLU ALA LEU HET FMN A 408 50 HET MLA A 409 9 HET MLA A 410 9 HET MLA A 411 7 HET NCA A 412 9 HET NA A 413 1 HET NA A 414 1 HET NA A 415 1 HET NA A 416 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MLA MALONIC ACID HETNAM NCA NICOTINAMIDE HETNAM NA SODIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 MLA 3(C3 H4 O4) FORMUL 6 NCA C6 H6 N2 O FORMUL 7 NA 4(NA 1+) FORMUL 11 HOH *445(H2 O) HELIX 1 1 SER A 12 GLN A 16 5 5 HELIX 2 2 SER A 46 ARG A 56 1 11 HELIX 3 3 SER A 72 SER A 76 5 5 HELIX 4 4 THR A 87 ASN A 104 1 18 HELIX 5 5 LEU A 115 ALA A 119 5 5 HELIX 6 6 ASP A 120 ARG A 127 1 8 HELIX 7 7 SER A 140 VAL A 150 1 11 HELIX 8 8 THR A 158 GLU A 168 1 11 HELIX 9 9 GLU A 168 ALA A 180 1 13 HELIX 10 10 TYR A 193 GLN A 200 1 8 HELIX 11 11 SER A 213 GLY A 233 1 21 HELIX 12 12 THR A 246 MET A 250 5 5 HELIX 13 13 LYS A 251 ASP A 255 5 5 HELIX 14 14 HIS A 258 LYS A 276 1 19 HELIX 15 15 SER A 297 GLN A 301 5 5 HELIX 16 16 ASN A 305 TRP A 312 1 8 HELIX 17 17 ASN A 321 ALA A 326 5 6 HELIX 18 18 PHE A 329 ALA A 337 1 9 HELIX 19 19 SER A 346 ASN A 352 1 7 HELIX 20 20 ASN A 354 GLY A 362 1 9 HELIX 21 21 ASP A 369 PHE A 373 5 5 HELIX 22 22 ASN A 382 MET A 386 5 5 HELIX 23 23 ASP A 387 VAL A 391 5 5 HELIX 24 24 ASP A 392 LYS A 398 1 7 SHEET 1 A 2 ILE A 18 VAL A 20 0 SHEET 2 A 2 ASN A 23 LEU A 25 -1 O ASN A 23 N VAL A 20 SHEET 1 B10 THR A 69 PHE A 70 0 SHEET 2 B10 PHE A 107 ILE A 113 1 O GLN A 111 N THR A 69 SHEET 3 B10 TYR A 184 ALA A 189 1 O GLU A 186 N THR A 110 SHEET 4 B10 ILE A 237 ILE A 241 1 O GLY A 238 N ILE A 185 SHEET 5 B10 TYR A 282 VAL A 286 1 O SER A 284 N ILE A 239 SHEET 6 B10 VAL A 315 ALA A 319 1 O LEU A 317 N VAL A 285 SHEET 7 B10 THR A 341 GLY A 344 1 O LEU A 342 N ILE A 316 SHEET 8 B10 ILE A 29 TYR A 31 1 N VAL A 30 O VAL A 343 SHEET 9 B10 LEU A 63 ILE A 65 1 O ILE A 65 N TYR A 31 SHEET 10 B10 PHE A 107 ILE A 113 1 O SER A 109 N LEU A 64 SHEET 1 C 2 VAL A 132 SER A 133 0 SHEET 2 C 2 ARG A 155 ALA A 156 1 O ARG A 155 N SER A 133 SHEET 1 D 2 VAL A 290 SER A 291 0 SHEET 2 D 2 VAL A 294 ASP A 295 -1 O VAL A 294 N SER A 291 LINK OD1 ASN A 104 NA NA A 415 1555 1555 2.64 LINK OD2 ASP A 196 NA NA A 414 1555 1555 2.73 LINK OG SER A 242 NA NA A 414 1555 1555 2.91 LINK O SER A 242 NA NA A 414 1555 1555 2.98 LINK O ASP A 335 NA NA A 416 1555 1555 2.34 LINK OD2 ASP A 338 NA NA A 416 1555 1555 2.51 LINK OG1 THR A 341 NA NA A 416 1555 1555 3.03 LINK NA NA A 413 O HOH A 417 1555 1555 2.70 LINK NA NA A 413 O HOH A 421 1555 1555 2.73 LINK NA NA A 413 O HOH A 755 1555 1555 2.82 LINK NA NA A 413 O HOH A 791 1555 1555 2.63 LINK NA NA A 414 O HOH A 501 1555 1555 2.93 LINK NA NA A 414 O HOH A 505 1555 1555 2.93 LINK NA NA A 415 O HOH A 747 1555 1555 2.62 LINK NA NA A 415 O HOH A 816 1555 1555 2.60 LINK NA NA A 415 O HOH A 850 1555 1555 3.11 LINK NA NA A 416 O HOH A 752 1555 1555 2.48 LINK NA NA A 416 O HOH A 802 1555 1555 2.49 CISPEP 1 ALA A 326 PRO A 327 0 8.74 SITE 1 AC1 21 PRO A 33 THR A 34 THR A 35 ALA A 68 SITE 2 AC1 21 GLN A 111 HIS A 188 HIS A 191 ARG A 240 SITE 3 AC1 21 GLY A 292 GLY A 320 ASN A 321 PHE A 345 SITE 4 AC1 21 SER A 346 ARG A 347 PHE A 373 TYR A 374 SITE 5 AC1 21 NCA A 412 HOH A 497 HOH A 537 HOH A 541 SITE 6 AC1 21 HOH A 561 SITE 1 AC2 6 TYR A 78 GLU A 79 GLY A 80 HOH A 429 SITE 2 AC2 6 HOH A 684 HOH A 859 SITE 1 AC3 9 HIS A 43 SER A 76 TYR A 78 VAL A 123 SITE 2 AC3 9 ARG A 127 HOH A 431 HOH A 670 HOH A 731 SITE 3 AC3 9 HOH A 809 SITE 1 AC4 6 LYS A 10 ASN A 354 TRP A 357 ARG A 360 SITE 2 AC4 6 HOH A 455 HOH A 711 SITE 1 AC5 6 ILE A 113 HIS A 188 HIS A 191 TYR A 193 SITE 2 AC5 6 FMN A 408 HOH A 749 SITE 1 AC6 4 HOH A 417 HOH A 421 HOH A 755 HOH A 791 SITE 1 AC7 6 HIS A 191 ASP A 196 SER A 242 ALA A 245 SITE 2 AC7 6 HOH A 501 HOH A 505 SITE 1 AC8 4 GLN A 26 ASN A 104 HOH A 747 HOH A 816 SITE 1 AC9 5 ASP A 335 ASP A 338 THR A 341 HOH A 752 SITE 2 AC9 5 HOH A 802 CRYST1 127.306 127.306 123.064 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007855 0.004535 0.000000 0.00000 SCALE2 0.000000 0.009070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008126 0.00000