HEADER TRANSFERASE 20-NOV-11 3UQE TITLE CRYSTAL STRUCTURE OF THE PHOSPHOFRUCTOKINASE-2 MUTANT Y23D FROM TITLE 2 ESCHERICHIA COLI CAVEAT 3UQE CHIRALITY ERROR AT C2' ATOM OF ATP RESIDUES COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOFRUCTOKINASE ISOZYME 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHOFRUCTOKINASE-2; COMPND 5 EC: 2.7.1.11; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B1723, JW5280, PFK2, PFKB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21-D KEYWDS PHOSPHOFRUCTOKINASES, PFK-2, GLYCOLYSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.M.PEREIRA,A.CANIUGUIR,M.BAEZ,R.CABRERA,R.C.GARATT,J.BABUL REVDAT 2 13-SEP-23 3UQE 1 REMARK SEQADV LINK REVDAT 1 21-NOV-12 3UQE 0 JRNL AUTH H.M.PEREIRA,A.CANIUGUIR,M.BAEZ,R.CABRERA,R.C.GARRATT,J.BABUL JRNL TITL STRUCTURE OF E. COLI PFK2 MUTANT Y23D JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 33560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9969 - 5.0351 0.98 3006 167 0.1905 0.2071 REMARK 3 2 5.0351 - 3.9971 0.91 2628 143 0.1628 0.1894 REMARK 3 3 3.9971 - 3.4920 0.92 2632 160 0.2027 0.2559 REMARK 3 4 3.4920 - 3.1728 0.93 2627 128 0.2298 0.2451 REMARK 3 5 3.1728 - 2.9454 0.94 2667 147 0.2281 0.2761 REMARK 3 6 2.9454 - 2.7717 0.94 2658 132 0.2339 0.2761 REMARK 3 7 2.7717 - 2.6329 0.95 2661 155 0.2463 0.3081 REMARK 3 8 2.6329 - 2.5183 0.94 2646 146 0.2498 0.2943 REMARK 3 9 2.5183 - 2.4214 0.93 2618 108 0.2587 0.2936 REMARK 3 10 2.4214 - 2.3378 0.92 2609 139 0.2867 0.3526 REMARK 3 11 2.3378 - 2.2647 0.92 2589 130 0.3147 0.3382 REMARK 3 12 2.2647 - 2.2000 0.91 2533 131 0.3762 0.4176 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 38.62 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.840 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.50310 REMARK 3 B22 (A**2) : 0.33020 REMARK 3 B33 (A**2) : 3.06810 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4596 REMARK 3 ANGLE : 0.927 6274 REMARK 3 CHIRALITY : 0.052 742 REMARK 3 PLANARITY : 0.004 815 REMARK 3 DIHEDRAL : 16.171 1716 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33605 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 58.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, DM REMARK 200 STARTING MODEL: PDB ENTRY 3CQD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 4000, 0.1 M SODIUM ACETATE PH REMARK 280 4.75, 0.2 M AMMONIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.95400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.95400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -89.12300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 599 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 552 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 555 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 291 REMARK 465 THR A 292 REMARK 465 ASN B 289 REMARK 465 GLN B 290 REMARK 465 GLY B 291 REMARK 465 THR B 292 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 GLN A 103 CG CD OE1 NE2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LEU A 288 CG CD1 CD2 REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 GLN B 103 CG CD OE1 NE2 REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 GLN B 151 CG CD OE1 NE2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 GLN B 249 CG CD OE1 NE2 REMARK 470 VAL B 252 CG1 CG2 REMARK 470 ARG B 293 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 123 O HOH A 616 1.95 REMARK 500 O ALA B 155 O HOH B 598 1.97 REMARK 500 OD1 ASP B 166 O HOH B 553 2.07 REMARK 500 NH1 ARG A 90 O MET A 108 2.09 REMARK 500 O LYS A 185 O HOH A 570 2.10 REMARK 500 O PRO B 109 O HOH B 589 2.16 REMARK 500 O HOH B 587 O HOH B 610 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR A 31 O HOH B 601 4545 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 24 -179.72 -68.02 REMARK 500 GLU A 25 -68.53 71.96 REMARK 500 PRO A 245 57.05 -68.83 REMARK 500 LEU A 294 -150.86 -124.07 REMARK 500 GLU B 25 -63.03 75.61 REMARK 500 LYS B 185 74.74 -119.85 REMARK 500 PRO B 245 66.23 -68.00 REMARK 500 LEU B 294 -145.94 -122.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 401 O2B REMARK 620 2 ATP A 401 O1G 75.7 REMARK 620 3 POP A 404 O1 68.3 64.6 REMARK 620 4 POP A 404 O4 146.9 83.4 79.7 REMARK 620 5 POP A 404 O5 116.7 126.2 72.4 57.7 REMARK 620 6 HOH A 574 O 97.4 94.6 156.7 109.8 130.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 401 O1B REMARK 620 2 ATP A 401 O2G 61.5 REMARK 620 3 HOH A 533 O 159.0 132.2 REMARK 620 4 HOH A 568 O 80.0 71.4 117.9 REMARK 620 5 HOH A 569 O 69.6 66.9 99.7 136.4 REMARK 620 6 HOH A 570 O 84.6 145.7 81.7 99.0 108.1 REMARK 620 7 HOH A 598 O 129.3 70.9 61.4 101.3 76.9 142.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 404 O2G REMARK 620 2 ATP B 404 O1B 78.9 REMARK 620 3 HOH B 553 O 109.8 103.9 REMARK 620 4 HOH B 554 O 73.1 61.3 164.6 REMARK 620 5 HOH B 556 O 142.1 70.9 99.4 72.6 REMARK 620 6 HOH B 582 O 89.4 144.6 111.5 83.4 102.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 POP B 402 O3 REMARK 620 2 POP B 402 O1 54.8 REMARK 620 3 POP B 402 O4 86.0 56.4 REMARK 620 4 ATP B 404 O2B 144.2 93.5 60.5 REMARK 620 5 HOH B 591 O 110.9 66.4 89.8 60.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CQD RELATED DB: PDB REMARK 900 RELATED ID: 3N1C RELATED DB: PDB REMARK 900 RELATED ID: 3UQD RELATED DB: PDB DBREF 3UQE A 1 309 UNP P06999 K6PF2_ECOLI 1 309 DBREF 3UQE B 1 309 UNP P06999 K6PF2_ECOLI 1 309 SEQADV 3UQE ASP A 23 UNP P06999 TYR 23 ENGINEERED MUTATION SEQADV 3UQE ASP B 23 UNP P06999 TYR 23 ENGINEERED MUTATION SEQRES 1 A 309 MET VAL ARG ILE TYR THR LEU THR LEU ALA PRO SER LEU SEQRES 2 A 309 ASP SER ALA THR ILE THR PRO GLN ILE ASP PRO GLU GLY SEQRES 3 A 309 LYS LEU ARG CYS THR ALA PRO VAL PHE GLU PRO GLY GLY SEQRES 4 A 309 GLY GLY ILE ASN VAL ALA ARG ALA ILE ALA HIS LEU GLY SEQRES 5 A 309 GLY SER ALA THR ALA ILE PHE PRO ALA GLY GLY ALA THR SEQRES 6 A 309 GLY GLU HIS LEU VAL SER LEU LEU ALA ASP GLU ASN VAL SEQRES 7 A 309 PRO VAL ALA THR VAL GLU ALA LYS ASP TRP THR ARG GLN SEQRES 8 A 309 ASN LEU HIS VAL HIS VAL GLU ALA SER GLY GLU GLN TYR SEQRES 9 A 309 ARG PHE VAL MET PRO GLY ALA ALA LEU ASN GLU ASP GLU SEQRES 10 A 309 PHE ARG GLN LEU GLU GLU GLN VAL LEU GLU ILE GLU SER SEQRES 11 A 309 GLY ALA ILE LEU VAL ILE SER GLY SER LEU PRO PRO GLY SEQRES 12 A 309 VAL LYS LEU GLU LYS LEU THR GLN LEU ILE SER ALA ALA SEQRES 13 A 309 GLN LYS GLN GLY ILE ARG CYS ILE VAL ASP SER SER GLY SEQRES 14 A 309 GLU ALA LEU SER ALA ALA LEU ALA ILE GLY ASN ILE GLU SEQRES 15 A 309 LEU VAL LYS PRO ASN GLN LYS GLU LEU SER ALA LEU VAL SEQRES 16 A 309 ASN ARG GLU LEU THR GLN PRO ASP ASP VAL ARG LYS ALA SEQRES 17 A 309 ALA GLN GLU ILE VAL ASN SER GLY LYS ALA LYS ARG VAL SEQRES 18 A 309 VAL VAL SER LEU GLY PRO GLN GLY ALA LEU GLY VAL ASP SEQRES 19 A 309 SER GLU ASN CYS ILE GLN VAL VAL PRO PRO PRO VAL LYS SEQRES 20 A 309 SER GLN SER THR VAL GLY ALA GLY ASP SER MET VAL GLY SEQRES 21 A 309 ALA MET THR LEU LYS LEU ALA GLU ASN ALA SER LEU GLU SEQRES 22 A 309 GLU MET VAL ARG PHE GLY VAL ALA ALA GLY SER ALA ALA SEQRES 23 A 309 THR LEU ASN GLN GLY THR ARG LEU CYS SER HIS ASP ASP SEQRES 24 A 309 THR GLN LYS ILE TYR ALA TYR LEU SER ARG SEQRES 1 B 309 MET VAL ARG ILE TYR THR LEU THR LEU ALA PRO SER LEU SEQRES 2 B 309 ASP SER ALA THR ILE THR PRO GLN ILE ASP PRO GLU GLY SEQRES 3 B 309 LYS LEU ARG CYS THR ALA PRO VAL PHE GLU PRO GLY GLY SEQRES 4 B 309 GLY GLY ILE ASN VAL ALA ARG ALA ILE ALA HIS LEU GLY SEQRES 5 B 309 GLY SER ALA THR ALA ILE PHE PRO ALA GLY GLY ALA THR SEQRES 6 B 309 GLY GLU HIS LEU VAL SER LEU LEU ALA ASP GLU ASN VAL SEQRES 7 B 309 PRO VAL ALA THR VAL GLU ALA LYS ASP TRP THR ARG GLN SEQRES 8 B 309 ASN LEU HIS VAL HIS VAL GLU ALA SER GLY GLU GLN TYR SEQRES 9 B 309 ARG PHE VAL MET PRO GLY ALA ALA LEU ASN GLU ASP GLU SEQRES 10 B 309 PHE ARG GLN LEU GLU GLU GLN VAL LEU GLU ILE GLU SER SEQRES 11 B 309 GLY ALA ILE LEU VAL ILE SER GLY SER LEU PRO PRO GLY SEQRES 12 B 309 VAL LYS LEU GLU LYS LEU THR GLN LEU ILE SER ALA ALA SEQRES 13 B 309 GLN LYS GLN GLY ILE ARG CYS ILE VAL ASP SER SER GLY SEQRES 14 B 309 GLU ALA LEU SER ALA ALA LEU ALA ILE GLY ASN ILE GLU SEQRES 15 B 309 LEU VAL LYS PRO ASN GLN LYS GLU LEU SER ALA LEU VAL SEQRES 16 B 309 ASN ARG GLU LEU THR GLN PRO ASP ASP VAL ARG LYS ALA SEQRES 17 B 309 ALA GLN GLU ILE VAL ASN SER GLY LYS ALA LYS ARG VAL SEQRES 18 B 309 VAL VAL SER LEU GLY PRO GLN GLY ALA LEU GLY VAL ASP SEQRES 19 B 309 SER GLU ASN CYS ILE GLN VAL VAL PRO PRO PRO VAL LYS SEQRES 20 B 309 SER GLN SER THR VAL GLY ALA GLY ASP SER MET VAL GLY SEQRES 21 B 309 ALA MET THR LEU LYS LEU ALA GLU ASN ALA SER LEU GLU SEQRES 22 B 309 GLU MET VAL ARG PHE GLY VAL ALA ALA GLY SER ALA ALA SEQRES 23 B 309 THR LEU ASN GLN GLY THR ARG LEU CYS SER HIS ASP ASP SEQRES 24 B 309 THR GLN LYS ILE TYR ALA TYR LEU SER ARG HET ATP A 401 31 HET MG A 402 1 HET MG A 403 1 HET POP A 404 9 HET MG B 401 1 HET POP B 402 9 HET MG B 403 1 HET ATP B 404 31 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM POP PYROPHOSPHATE 2- FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 MG 4(MG 2+) FORMUL 6 POP 2(H2 O7 P2 2-) FORMUL 11 HOH *257(H2 O) HELIX 1 1 GLY A 39 LEU A 51 1 13 HELIX 2 2 GLY A 62 ASP A 75 1 14 HELIX 3 3 ASN A 114 LEU A 126 1 13 HELIX 4 4 LYS A 145 GLN A 159 1 15 HELIX 5 5 SER A 168 LEU A 176 1 9 HELIX 6 6 ASN A 187 ASN A 196 1 10 HELIX 7 7 ASP A 203 SER A 215 1 13 HELIX 8 8 GLY A 226 GLN A 228 5 3 HELIX 9 9 GLY A 253 GLU A 268 1 16 HELIX 10 10 SER A 271 THR A 287 1 17 HELIX 11 11 SER A 296 ARG A 309 1 14 HELIX 12 12 GLY B 39 LEU B 51 1 13 HELIX 13 13 GLY B 62 GLU B 76 1 15 HELIX 14 14 ASN B 114 LEU B 126 1 13 HELIX 15 15 LYS B 145 GLN B 159 1 15 HELIX 16 16 GLY B 169 ALA B 177 1 9 HELIX 17 17 ASN B 187 ASN B 196 1 10 HELIX 18 18 ASP B 203 SER B 215 1 13 HELIX 19 19 GLY B 226 GLN B 228 5 3 HELIX 20 20 GLY B 253 GLU B 268 1 16 HELIX 21 21 SER B 271 THR B 287 1 17 HELIX 22 22 SER B 296 SER B 308 1 13 SHEET 1 A 6 VAL A 80 GLU A 84 0 SHEET 2 A 6 THR A 56 ALA A 61 1 N ALA A 61 O VAL A 83 SHEET 3 A 6 ILE A 4 LEU A 7 1 N THR A 6 O ILE A 58 SHEET 4 A 6 ILE A 133 SER A 137 1 O VAL A 135 N LEU A 7 SHEET 5 A 6 ARG A 162 ASP A 166 1 O ILE A 164 N ILE A 136 SHEET 6 A 6 LEU A 183 VAL A 184 1 O LEU A 183 N VAL A 165 SHEET 1 B 4 VAL A 34 GLY A 38 0 SHEET 2 B 4 SER A 12 THR A 19 -1 N ALA A 16 O VAL A 34 SHEET 3 B 4 LEU A 93 VAL A 97 1 O HIS A 96 N THR A 17 SHEET 4 B 4 GLU A 102 PHE A 106 -1 O GLU A 102 N VAL A 97 SHEET 1 C 3 VAL A 221 SER A 224 0 SHEET 2 C 3 ALA A 230 VAL A 233 -1 O LEU A 231 N VAL A 223 SHEET 3 C 3 CYS A 238 VAL A 241 -1 O ILE A 239 N GLY A 232 SHEET 1 D 6 VAL B 80 GLU B 84 0 SHEET 2 D 6 ALA B 55 ALA B 61 1 N ALA B 61 O VAL B 83 SHEET 3 D 6 ILE B 4 LEU B 7 1 N THR B 6 O ILE B 58 SHEET 4 D 6 ILE B 133 SER B 137 1 O ILE B 133 N TYR B 5 SHEET 5 D 6 ARG B 162 ASP B 166 1 O ILE B 164 N ILE B 136 SHEET 6 D 6 LEU B 183 VAL B 184 1 O LEU B 183 N VAL B 165 SHEET 1 E 4 VAL B 34 GLY B 38 0 SHEET 2 E 4 SER B 12 THR B 19 -1 N SER B 12 O GLY B 38 SHEET 3 E 4 LEU B 93 VAL B 97 1 O HIS B 96 N THR B 19 SHEET 4 E 4 GLN B 103 PHE B 106 -1 O TYR B 104 N VAL B 95 SHEET 1 F 3 VAL B 221 SER B 224 0 SHEET 2 F 3 ALA B 230 VAL B 233 -1 O LEU B 231 N VAL B 223 SHEET 3 F 3 CYS B 238 VAL B 241 -1 O ILE B 239 N GLY B 232 LINK O2B ATP A 401 MG MG A 402 1555 1555 2.61 LINK O1G ATP A 401 MG MG A 402 1555 1555 2.69 LINK O1B ATP A 401 MG MG A 403 1555 1555 2.52 LINK O2G ATP A 401 MG MG A 403 1555 1555 2.92 LINK MG MG A 402 O1 POP A 404 1555 1555 2.70 LINK MG MG A 402 O4 POP A 404 1555 1555 2.78 LINK MG MG A 402 O5 POP A 404 1555 1555 2.83 LINK MG MG A 402 O HOH A 574 1555 1555 2.66 LINK MG MG A 403 O HOH A 533 1555 1555 2.87 LINK MG MG A 403 O HOH A 568 1555 1555 2.67 LINK MG MG A 403 O HOH A 569 1555 1555 2.70 LINK MG MG A 403 O HOH A 570 1555 1555 2.78 LINK MG MG A 403 O HOH A 598 1555 1555 2.72 LINK MG MG B 401 O2G ATP B 404 1555 1555 2.35 LINK MG MG B 401 O1B ATP B 404 1555 1555 2.39 LINK MG MG B 401 O HOH B 553 1555 1555 2.70 LINK MG MG B 401 O HOH B 554 1555 1555 2.96 LINK MG MG B 401 O HOH B 556 1555 1555 2.74 LINK MG MG B 401 O HOH B 582 1555 1555 2.81 LINK O3 POP B 402 MG MG B 403 1555 1555 2.90 LINK O1 POP B 402 MG MG B 403 1555 1555 2.97 LINK O4 POP B 402 MG MG B 403 1555 1555 3.00 LINK MG MG B 403 O2B ATP B 404 1555 1555 2.93 LINK MG MG B 403 O HOH B 591 1555 1555 2.98 CISPEP 1 VAL A 252 GLY A 253 0 -16.98 SITE 1 AC1 27 LYS A 185 ASN A 187 SER A 224 LEU A 225 SITE 2 AC1 27 GLY A 226 PRO A 227 GLY A 229 SER A 248 SITE 3 AC1 27 ALA A 254 GLY A 255 MET A 258 VAL A 280 SITE 4 AC1 27 GLY A 283 SER A 284 THR A 287 MG A 402 SITE 5 AC1 27 MG A 403 POP A 404 HOH A 505 HOH A 510 SITE 6 AC1 27 HOH A 519 HOH A 536 HOH A 569 HOH A 574 SITE 7 AC1 27 HOH A 577 HOH A 604 LYS B 27 SITE 1 AC2 3 ATP A 401 POP A 404 HOH A 574 SITE 1 AC3 8 ASP A 166 GLU A 190 ATP A 401 HOH A 533 SITE 2 AC3 8 HOH A 568 HOH A 569 HOH A 570 HOH A 598 SITE 1 AC4 7 ASN A 187 LYS A 189 ATP A 401 MG A 402 SITE 2 AC4 7 HOH A 569 LYS B 27 HOH B 599 SITE 1 AC5 6 ASP B 166 ATP B 404 HOH B 553 HOH B 554 SITE 2 AC5 6 HOH B 556 HOH B 582 SITE 1 AC6 7 GLY A 26 LYS A 27 ASN B 187 MG B 403 SITE 2 AC6 7 ATP B 404 HOH B 507 HOH B 554 SITE 1 AC7 4 ASN B 187 POP B 402 ATP B 404 HOH B 591 SITE 1 AC8 28 LYS A 27 LYS B 185 ASN B 187 SER B 224 SITE 2 AC8 28 LEU B 225 GLY B 226 PRO B 227 GLY B 229 SITE 3 AC8 28 SER B 248 ALA B 254 GLY B 255 MET B 258 SITE 4 AC8 28 VAL B 280 GLY B 283 SER B 284 THR B 287 SITE 5 AC8 28 MG B 401 POP B 402 MG B 403 HOH B 503 SITE 6 AC8 28 HOH B 507 HOH B 508 HOH B 520 HOH B 543 SITE 7 AC8 28 HOH B 554 HOH B 556 HOH B 591 HOH B 609 CRYST1 43.838 89.123 175.908 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022811 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005685 0.00000