HEADER HYDROLASE 22-NOV-11 3URP TITLE RE-REFINEMENT OF PDB ENTRY 5RNT - RIBONUCLEASE T1 WITH GUANOSINE-3', TITLE 2 5'-DIPHOSPHATE AND PHOSPHATE ION BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANYL-SPECIFIC RIBONUCLEASE T1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNASE T1; COMPND 5 EC: 3.1.27.3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; SOURCE 3 ORGANISM_TAXID: 5062 KEYWDS ROLL, HYDROLASE, ENDORIBONUCLEASE, RNA EXPDTA X-RAY DIFFRACTION AUTHOR O.S.SMART,T.O.WOMACK,C.FLENSBURG,P.KELLER,A.SHARFF,W.PACIOREK, AUTHOR 2 C.VONRHEIN,G.BRICOGNE REVDAT 3 13-SEP-23 3URP 1 REMARK SEQADV REVDAT 2 20-FEB-13 3URP 1 JRNL REVDAT 1 28-MAR-12 3URP 0 JRNL AUTH O.S.SMART,T.O.WOMACK,C.FLENSBURG,P.KELLER,W.PACIOREK, JRNL AUTH 2 A.SHARFF,C.VONRHEIN,G.BRICOGNE JRNL TITL EXPLOITING STRUCTURE SIMILARITY IN REFINEMENT: AUTOMATED NCS JRNL TITL 2 AND TARGET-STRUCTURE RESTRAINTS IN BUSTER. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 368 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22505257 JRNL DOI 10.1107/S0907444911056058 REMARK 0 REMARK 0 THIS ENTRY 3URP REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL REMARK 0 STRUCTURAL DATA OF R5RNTSF DETERMINED BY THE AUTHORS OF THE PDB REMARK 0 ENTRY 5RNT: W.SAENGER,U.HEINEMANN,A.LENZ REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 5RNT REMARK 0 AUTH A.LENZ,U.HEINEMANN,M.MASLOWSKA,W.SAENGER REMARK 0 TITL X-RAY ANALYSIS OF CUBIC CRYSTALS OF THE COMPLEX FORMED REMARK 0 TITL 2 BETWEEN RIBONUCLEASE T1 AND GUANOSINE-3',5'-BISPHOSPHATE REMARK 0 REF ACTA CRYSTALLOGR.,SECT.B V. 47 521 1991 REMARK 0 REFN ISSN 0108-7681 REMARK 0 PMID 1930833 REMARK 0 ORIGINAL DATA REFERENCE 2 REMARK 0 PDB ID: 5RNT REMARK 0 AUTH A.LENZ,H.W.CHOE,J.GRANZIN,U.HEINEMANN,W.SAENGER REMARK 0 TITL THREE-DIMENSIONAL STRUCTURE OF THE TERNARY COMPLEX BETWEEN REMARK 0 TITL 2 RIBONUCLEASE T1, GUANOSINE 3 ,5 -BISPHOSPHATE AND INORGANIC REMARK 0 TITL 3 PHOSPHATE AT 0.19 NM RESOLUTION REMARK 0 REF EUR.J.BIOCHEM. V. 211 311 1993 REMARK 0 REFN ISSN 0014-2956 REMARK 0 PMID 8425541 REMARK 0 DOI 10.1111/J.1432-1033.1993.TB19900.X REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.13.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 1874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.440 REMARK 3 FREE R VALUE TEST SET COUNT : 102 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.57 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.89 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 524 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2325 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 493 REMARK 3 BIN R VALUE (WORKING SET) : 0.2305 REMARK 3 BIN FREE R VALUE : 0.2665 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.92 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 31 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 776 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.465 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.857 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 846 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1171 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 261 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 24 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 140 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 846 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 103 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 906 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.47 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.30 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. X-RAY WEIGHT 8.00. 2. HYDROPHOBIC REMARK 3 VOID CORRECTION ON. 3. PGP RESTRAINTS FROM GRADE 1.1.1 USING REMARK 3 MOGUL AND RM1 QM. 4. SIMILARITY, NCS REPRESENTATION: NONE, REMARK 3 TARGET RESTRAINTS: LSSR WEIGHT 1.5 TARGET STRUCTURE 3SYU.PDB. REMARK 4 REMARK 4 3URP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000069125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3SYU REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 5RNT. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 43.23500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 43.23500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 43.23500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 43.23500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 43.23500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 43.23500 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 43.23500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 43.23500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 43.23500 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 43.23500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 43.23500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 43.23500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 43.23500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 43.23500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 43.23500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 43.23500 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 43.23500 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 43.23500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 43.23500 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 43.23500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 43.23500 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 43.23500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 43.23500 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 43.23500 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 43.23500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 43.23500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 43.23500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 43.23500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 43.23500 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 43.23500 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 43.23500 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 43.23500 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 43.23500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 43.23500 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 43.23500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 43.23500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 70.71 48.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGP A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 106 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5RNT RELATED DB: PDB REMARK 900 THIS ENTRY 3URP REFLECTS AN ALTERNATIVE MODELLING OF X-RAY DATA REMARK 900 R5RNTSF DBREF 3URP A 1 104 UNP P00651 RNT1_ASPOR 27 130 SEQADV 3URP LYS A 25 UNP P00651 GLN 51 CONFLICT SEQRES 1 A 104 ALA CYS ASP TYR THR CYS GLY SER ASN CYS TYR SER SER SEQRES 2 A 104 SER ASP VAL SER THR ALA GLN ALA ALA GLY TYR LYS LEU SEQRES 3 A 104 HIS GLU ASP GLY GLU THR VAL GLY SER ASN SER TYR PRO SEQRES 4 A 104 HIS LYS TYR ASN ASN TYR GLU GLY PHE ASP PHE SER VAL SEQRES 5 A 104 SER SER PRO TYR TYR GLU TRP PRO ILE LEU SER SER GLY SEQRES 6 A 104 ASP VAL TYR SER GLY GLY SER PRO GLY ALA ASP ARG VAL SEQRES 7 A 104 VAL PHE ASN GLU ASN ASN GLN LEU ALA GLY VAL ILE THR SEQRES 8 A 104 HIS THR GLY ALA SER GLY ASN ASN PHE VAL GLU CYS THR HET PGP A 105 41 HET PO4 A 106 5 HET UNX A 107 1 HETNAM PGP GUANOSINE-3',5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 PGP C10 H15 N5 O11 P2 FORMUL 3 PO4 O4 P 3- FORMUL 4 UNX X FORMUL 5 HOH *8(H2 O) HELIX 1 1 SER A 12 GLY A 30 1 19 SHEET 1 A 2 TYR A 4 CYS A 6 0 SHEET 2 A 2 ASN A 9 TYR A 11 -1 O TYR A 11 N TYR A 4 SHEET 1 B 5 HIS A 40 TYR A 42 0 SHEET 2 B 5 TYR A 56 PRO A 60 -1 O GLU A 58 N HIS A 40 SHEET 3 B 5 ASP A 76 ASN A 81 -1 O VAL A 78 N TRP A 59 SHEET 4 B 5 LEU A 86 THR A 91 -1 O ALA A 87 N VAL A 79 SHEET 5 B 5 VAL A 101 GLU A 102 -1 O VAL A 101 N THR A 91 SSBOND 1 CYS A 2 CYS A 10 1555 1555 2.03 SSBOND 2 CYS A 6 CYS A 103 1555 1555 2.02 CISPEP 1 TYR A 38 PRO A 39 0 -3.93 CISPEP 2 SER A 54 PRO A 55 0 2.26 SITE 1 AC1 11 HIS A 40 LYS A 41 TYR A 42 ASN A 43 SITE 2 AC1 11 ASN A 44 TYR A 45 GLU A 46 GLU A 58 SITE 3 AC1 11 ASN A 98 PHE A 100 PO4 A 106 SITE 1 AC2 6 TYR A 38 GLU A 58 ARG A 77 HIS A 92 SITE 2 AC2 6 PHE A 100 PGP A 105 CRYST1 86.470 86.470 86.470 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011565 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011565 0.00000