HEADER TRANSCRIPTION 24-NOV-11 3UT1 TITLE CRYSTAL STRUCTURE OF THE 3-MBT REPEAT DOMAIN OF L3MBTL3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LETHAL(3)MALIGNANT BRAIN TUMOR-LIKE PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 228-551; COMPND 5 SYNONYM: H-L(3)MBT-LIKE PROTEIN 3, L(3)MBT-LIKE PROTEIN 3, MBT-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: L3MBTL3, KIAA1798, MBT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PET28-SBP-TEV; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BL21-V2R-PRARE2 KEYWDS CHROMATIN MODIFICATION, TRANSCRIPTION REPRESSION, MBT REPEAT, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.ZHONG,W.TEMPEL,A.K.WERNIMONT,S.GRASLUND,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 C.BOUNTRA,J.WEIGELT,P.J.BROWN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 13-SEP-23 3UT1 1 REMARK LINK REVDAT 3 08-NOV-17 3UT1 1 REMARK REVDAT 2 29-FEB-12 3UT1 1 AUTHOR JRNL REVDAT 1 28-DEC-11 3UT1 0 JRNL AUTH N.ZHONG,W.TEMPEL,A.K.WERNIMONT,S.GRASLUND,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,P.J.BROWN JRNL TITL CRYSTAL STRUCTURE OF THE 3-MBT REPEAT DOMAIN OF L3MBTL3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20448 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.027 REMARK 3 FREE R VALUE TEST SET COUNT : 1028 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1338 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2463 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.04300 REMARK 3 B22 (A**2) : -1.47800 REMARK 3 B33 (A**2) : 0.63600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.88800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.902 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2591 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1714 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3547 ; 1.309 ; 1.922 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4177 ; 0.847 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 5.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;30.125 ;23.983 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;13.149 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;16.277 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2911 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 556 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: REFINED INDIVIDUALLY. REMARK 3 RESTRAINTS FOR REFINEMENT OF HEPES COORDINATES WERE PREPARED ON REMARK 3 THE PRODRG SERVER USING COORDINATES FROM PDB ENTRY 1CXQ. COOT AND REMARK 3 THE MOLPROBITY SERVER WERE ALSO USED. NOTE BY AUTHOR: DENSITY AT REMARK 3 RESIDUE 373 OF CHAIN A IS INCONSISTENT WITH VALYL TYPE. REMARK 4 REMARK 4 3UT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20483 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.85900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: BASED ON UNPUBLISHED MODEL OF L3MBTL1, ITSELF REMARK 200 BASED ON MOLECULAR REPLACEMENT WITH COORDINATES FROM PDB ENTRY REMARK 200 1OYX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG-3350, 0.1M AMMONIUM SULFATE, REMARK 280 0.2M COBALTOUS CHLORIDE, 0.1M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.14350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.30950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.14350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.30950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS PER AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 228 REMARK 465 LYS A 229 REMARK 465 LYS A 230 REMARK 465 PRO A 443 REMARK 465 ASN A 444 REMARK 465 PRO A 546 REMARK 465 LEU A 547 REMARK 465 GLU A 548 REMARK 465 LEU A 549 REMARK 465 MET A 550 REMARK 465 GLU A 551 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 LYS A 249 CE NZ REMARK 470 LYS A 252 CD CE NZ REMARK 470 TYR A 259 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 336 CE NZ REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 LYS A 347 CD CE NZ REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 GLU A 360 CG CD OE1 OE2 REMARK 470 ILE A 364 CG1 CG2 CD1 REMARK 470 THR A 365 OG1 CG2 REMARK 470 VAL A 366 CG1 CG2 REMARK 470 ARG A 372 CD NE CZ NH1 NH2 REMARK 470 ARG A 433 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 445 CG1 CG2 REMARK 470 LYS A 446 CG CD CE NZ REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 GLU A 455 CG CD OE1 OE2 REMARK 470 GLU A 456 CG CD OE1 OE2 REMARK 470 LEU A 460 CG CD1 CD2 REMARK 470 LYS A 468 CD CE NZ REMARK 470 ASN A 488 CG OD1 ND2 REMARK 470 SER A 545 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 398 -128.88 47.00 REMARK 500 PHE A 448 126.82 -31.56 REMARK 500 LYS A 478 -16.28 86.90 REMARK 500 LYS A 478 -16.72 87.05 REMARK 500 ASP A 485 98.78 -68.72 REMARK 500 HIS A 503 12.88 -143.71 REMARK 500 PRO A 525 4.01 -68.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 1 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 63 O REMARK 620 2 HOH A 93 O 82.2 REMARK 620 3 HOH A 94 O 80.4 162.4 REMARK 620 4 HIS A 422 NE2 80.6 80.2 94.3 REMARK 620 5 HIS A 503 NE2 169.4 108.0 89.2 98.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 2 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 100 O REMARK 620 2 HIS A 404 NE2 117.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 552 DBREF 3UT1 A 228 551 UNP Q96JM7 LMBL3_HUMAN 228 551 SEQRES 1 A 324 GLY LYS LYS ALA TRP CYS TRP ALA SER TYR LEU GLU GLU SEQRES 2 A 324 GLU LYS ALA VAL ALA VAL PRO ALA LYS LEU PHE LYS GLU SEQRES 3 A 324 HIS GLN SER PHE PRO TYR ASN LYS ASN GLY PHE LYS VAL SEQRES 4 A 324 GLY MET LYS LEU GLU GLY VAL ASP PRO GLU HIS GLN SER SEQRES 5 A 324 VAL TYR CYS VAL LEU THR VAL ALA GLU VAL CYS GLY TYR SEQRES 6 A 324 ARG ILE LYS LEU HIS PHE ASP GLY TYR SER ASP CYS TYR SEQRES 7 A 324 ASP PHE TRP VAL ASN ALA ASP ALA LEU ASP ILE HIS PRO SEQRES 8 A 324 VAL GLY TRP CYS GLU LYS THR GLY HIS LYS LEU HIS PRO SEQRES 9 A 324 PRO LYS GLY TYR LYS GLU GLU GLU PHE ASN TRP GLN THR SEQRES 10 A 324 TYR LEU LYS THR CYS LYS ALA GLN ALA ALA PRO LYS SER SEQRES 11 A 324 LEU PHE GLU ASN GLN ASN ILE THR VAL ILE PRO SER GLY SEQRES 12 A 324 PHE ARG VAL GLY MET LYS LEU GLU ALA VAL ASP LYS LYS SEQRES 13 A 324 ASN PRO SER PHE ILE CYS VAL ALA THR VAL THR ASP MET SEQRES 14 A 324 VAL ASP ASN ARG PHE LEU VAL HIS PHE ASP ASN TRP ASP SEQRES 15 A 324 GLU SER TYR ASP TYR TRP CYS GLU ALA SER SER PRO HIS SEQRES 16 A 324 ILE HIS PRO VAL GLY TRP CYS LYS GLU HIS ARG ARG THR SEQRES 17 A 324 LEU ILE THR PRO PRO GLY TYR PRO ASN VAL LYS HIS PHE SEQRES 18 A 324 SER TRP ASP LYS TYR LEU GLU GLU THR ASN SER LEU PRO SEQRES 19 A 324 ALA PRO ALA ARG ALA PHE LYS VAL LYS PRO PRO HIS GLY SEQRES 20 A 324 PHE GLN LYS LYS MET LYS LEU GLU VAL VAL ASP LYS ARG SEQRES 21 A 324 ASN PRO MET PHE ILE ARG VAL ALA THR VAL ALA ASP THR SEQRES 22 A 324 ASP ASP HIS ARG VAL LYS VAL HIS PHE ASP GLY TRP ASN SEQRES 23 A 324 ASN CYS TYR ASP TYR TRP ILE ASP ALA ASP SER PRO ASP SEQRES 24 A 324 ILE HIS PRO VAL GLY TRP CYS SER LYS THR GLY HIS PRO SEQRES 25 A 324 LEU GLN PRO PRO LEU SER PRO LEU GLU LEU MET GLU HET CO A 1 1 HET CO A 2 1 HET CO A 3 1 HET CO A 4 1 HET CO A 5 1 HET EPE A 552 15 HET UNX A 553 1 HET UNX A 554 1 HET UNX A 555 1 HET UNX A 556 1 HET UNX A 557 1 HET UNX A 7 1 HET UNX A 8 1 HET UNX A 10 1 HET UNX A 11 1 HET UNX A 12 1 HET UNX A 13 1 HET UNX A 14 1 HETNAM CO COBALT (II) ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM UNX UNKNOWN ATOM OR ION HETSYN EPE HEPES FORMUL 2 CO 5(CO 2+) FORMUL 7 EPE C8 H18 N2 O4 S FORMUL 8 UNX 12(X) FORMUL 20 HOH *76(H2 O) HELIX 1 1 CYS A 233 LYS A 242 1 10 HELIX 2 2 PRO A 247 PHE A 251 5 5 HELIX 3 3 SER A 302 ASP A 306 5 5 HELIX 4 4 GLY A 320 GLY A 326 1 7 HELIX 5 5 ASN A 341 CYS A 349 1 9 HELIX 6 6 PRO A 355 PHE A 359 5 5 HELIX 7 7 ASP A 409 ASP A 413 5 5 HELIX 8 8 GLY A 427 HIS A 432 1 6 HELIX 9 9 SER A 449 THR A 457 1 9 HELIX 10 10 PRO A 463 PHE A 467 5 5 HELIX 11 11 ASN A 513 ASP A 517 5 5 HELIX 12 12 GLY A 531 GLY A 537 1 7 SHEET 1 A 5 PHE A 307 ASN A 310 0 SHEET 2 A 5 ARG A 293 PHE A 298 -1 N LEU A 296 O PHE A 307 SHEET 3 A 5 HIS A 277 CYS A 290 -1 N CYS A 290 O ARG A 293 SHEET 4 A 5 LYS A 269 ASP A 274 -1 N GLY A 272 O CYS A 282 SHEET 5 A 5 ILE A 316 HIS A 317 -1 O HIS A 317 N GLU A 271 SHEET 1 B 4 PHE A 307 ASN A 310 0 SHEET 2 B 4 ARG A 293 PHE A 298 -1 N LEU A 296 O PHE A 307 SHEET 3 B 4 HIS A 277 CYS A 290 -1 N CYS A 290 O ARG A 293 SHEET 4 B 4 LEU A 329 HIS A 330 1 O HIS A 330 N TYR A 281 SHEET 1 C 5 TYR A 414 CYS A 416 0 SHEET 2 C 5 ARG A 400 PHE A 405 -1 N VAL A 403 O TYR A 414 SHEET 3 C 5 ASN A 384 VAL A 397 -1 N ASP A 395 O LEU A 402 SHEET 4 C 5 LYS A 376 ASP A 381 -1 N ALA A 379 O CYS A 389 SHEET 5 C 5 ILE A 423 HIS A 424 -1 O HIS A 424 N GLU A 378 SHEET 1 D 4 TYR A 414 CYS A 416 0 SHEET 2 D 4 ARG A 400 PHE A 405 -1 N VAL A 403 O TYR A 414 SHEET 3 D 4 ASN A 384 VAL A 397 -1 N ASP A 395 O LEU A 402 SHEET 4 D 4 LEU A 436 ILE A 437 1 O ILE A 437 N ILE A 388 SHEET 1 E 5 TYR A 518 ASP A 521 0 SHEET 2 E 5 ARG A 504 PHE A 509 -1 N VAL A 507 O TYR A 518 SHEET 3 E 5 ILE A 492 THR A 500 -1 N ALA A 498 O LYS A 506 SHEET 4 E 5 LYS A 480 VAL A 484 -1 N VAL A 483 O ARG A 493 SHEET 5 E 5 ILE A 527 HIS A 528 -1 O HIS A 528 N GLU A 482 LINK CO CO A 1 O HOH A 63 1555 1555 2.32 LINK CO CO A 1 O HOH A 93 1555 1555 2.19 LINK CO CO A 1 O HOH A 94 1555 1555 1.97 LINK CO CO A 1 NE2 HIS A 422 1555 1555 2.23 LINK CO CO A 1 NE2 HIS A 503 1555 1555 2.18 LINK CO CO A 2 O HOH A 100 1555 1555 2.67 LINK CO CO A 2 NE2 HIS A 404 1555 1555 2.29 LINK CO CO A 3 NE2 HIS A 432 1555 1555 2.51 LINK CO CO A 4 NE2 HIS A 330 1555 1555 2.20 SITE 1 AC1 5 HOH A 63 HOH A 93 HOH A 94 HIS A 422 SITE 2 AC1 5 HIS A 503 SITE 1 AC2 3 HOH A 100 HIS A 404 ASN A 407 SITE 1 AC3 1 HIS A 432 SITE 1 AC4 1 HIS A 330 SITE 1 AC5 1 HIS A 277 SITE 1 AC6 8 PRO A 355 ASP A 381 ASN A 384 PHE A 387 SITE 2 AC6 8 CYS A 389 PHE A 405 TRP A 408 TYR A 412 CRYST1 92.287 70.619 58.574 90.00 119.95 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010836 0.000000 0.006243 0.00000 SCALE2 0.000000 0.014160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019704 0.00000