HEADER TRANSFERASE 25-NOV-11 3UT6 TITLE CRYSTAL STRUCTURE OF E. COLI PNP COMPLEXED WITH PO4 AND FORMYCIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE DEOD-TYPE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PNP, INOSINE PHOSPHORYLASE; COMPND 5 EC: 2.4.2.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12 KEYWDS PURINE NUCLEOSIDE PHOSPHORYLASE, FORMYCIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.STEFANIC REVDAT 3 20-MAR-24 3UT6 1 REMARK REVDAT 2 08-NOV-17 3UT6 1 REMARK REVDAT 1 23-MAY-12 3UT6 0 JRNL AUTH Z.STEFANIC,M.NARCZYK,G.MIKLEUSEVIC,B.WIELGUS-KUTROWSKA, JRNL AUTH 2 A.BZOWSKA,M.LUIC JRNL TITL NEW PHOSPHATE BINDING SITES IN THE CRYSTAL STRUCTURE OF JRNL TITL 2 ESCHERICHIA COLI PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED JRNL TITL 3 WITH PHOSPHATE AND FORMYCIN A. JRNL REF FEBS LETT. V. 586 967 2012 JRNL REFN ISSN 0014-5793 JRNL PMID 22569248 JRNL DOI 10.1016/J.FEBSLET.2012.02.039 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 77505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.420 REMARK 3 FREE R VALUE TEST SET COUNT : 1873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.5991 - 4.4501 0.98 6513 163 0.1634 0.1816 REMARK 3 2 4.4501 - 3.5342 0.98 6168 153 0.1368 0.1447 REMARK 3 3 3.5342 - 3.0881 0.98 6126 149 0.1603 0.1957 REMARK 3 4 3.0881 - 2.8060 0.97 6025 151 0.1747 0.1751 REMARK 3 5 2.8060 - 2.6050 0.97 5958 146 0.1700 0.1936 REMARK 3 6 2.6050 - 2.4515 0.96 5873 143 0.1636 0.1991 REMARK 3 7 2.4515 - 2.3288 0.94 5750 143 0.1628 0.2035 REMARK 3 8 2.3288 - 2.2275 0.95 5804 143 0.1566 0.2119 REMARK 3 9 2.2275 - 2.1418 0.93 5641 136 0.1632 0.1837 REMARK 3 10 2.1418 - 2.0679 0.92 5586 146 0.1718 0.2206 REMARK 3 11 2.0679 - 2.0032 0.91 5503 134 0.1830 0.2000 REMARK 3 12 2.0032 - 1.9460 0.89 5351 132 0.2035 0.2750 REMARK 3 13 1.9460 - 1.8948 0.88 5334 134 0.2246 0.2711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 41.55 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62060 REMARK 3 B22 (A**2) : 1.62060 REMARK 3 B33 (A**2) : -3.24120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5691 REMARK 3 ANGLE : 1.174 7710 REMARK 3 CHIRALITY : 0.072 878 REMARK 3 PLANARITY : 0.004 990 REMARK 3 DIHEDRAL : 13.537 2118 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UT6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80026 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.895 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.90600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM CITRATE BUFFER, 35% AMMONIUM REMARK 280 PHOSPHATE (W/V), PH 5.2, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.69400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 159.38800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.54100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 199.23500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.84700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.69400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 159.38800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 199.23500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 119.54100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.84700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -199.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 119.54100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 284 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 375 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 322 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 332 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 354 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 462 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 278 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 456 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 534 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 99 CD CE NZ REMARK 470 LYS A 237 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 90 N SER A 90 CA -0.203 REMARK 500 SER A 90 N SER A 90 CA -0.200 REMARK 500 SER B 90 N SER B 90 CA -0.156 REMARK 500 SER B 90 N SER B 90 CA -0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 90 C - N - CA ANGL. DEV. = 18.5 DEGREES REMARK 500 SER B 90 C - N - CA ANGL. DEV. = 17.8 DEGREES REMARK 500 SER B 90 N - CA - CB ANGL. DEV. = 10.8 DEGREES REMARK 500 SER B 90 N - CA - CB ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 41 14.25 -144.69 REMARK 500 ARG A 43 17.13 58.94 REMARK 500 ARG A 101 -11.09 78.56 REMARK 500 GLU A 179 -157.08 -135.06 REMARK 500 GLU A 181 -33.30 -135.55 REMARK 500 ALA A 194 -167.89 -127.59 REMARK 500 ARG A 217 37.15 -81.45 REMARK 500 GLN A 218 -40.26 -147.78 REMARK 500 PHE A 221 57.47 -95.12 REMARK 500 ARG B 101 -8.83 78.58 REMARK 500 GLU B 179 -156.16 -138.22 REMARK 500 GLU B 181 -32.32 -138.01 REMARK 500 ALA B 194 -167.26 -121.12 REMARK 500 ARG B 207 -71.88 -84.74 REMARK 500 THR B 208 -39.79 -39.37 REMARK 500 GLN B 211 162.82 122.54 REMARK 500 THR B 212 0.90 -168.04 REMARK 500 THR B 213 173.34 70.64 REMARK 500 ARG C 43 18.45 56.97 REMARK 500 ARG C 101 -4.56 75.89 REMARK 500 ASP C 163 -98.51 -65.40 REMARK 500 GLU C 179 -155.11 -137.46 REMARK 500 GLU C 181 -34.29 -136.75 REMARK 500 ALA C 194 -169.70 -119.24 REMARK 500 ILE C 206 20.96 -67.99 REMARK 500 ARG C 207 49.71 176.07 REMARK 500 THR C 208 -174.96 177.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMC A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMC B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMC C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ONV RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH SO4, WITHOUT FORMYCIN REMARK 900 RELATED ID: 3OOE RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH SO4 OR PO4 AND WITHOUT FORMYCIN REMARK 900 RELATED ID: 3OOH RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH SO4 OR PO4 AND WITHOUT FORMYCIN REMARK 900 RELATED ID: 3OPV RELATED DB: PDB REMARK 900 ARG24/ALA24 MUTANT OF THE SAME PROTEIN DBREF 3UT6 A 1 237 UNP P0ABP8 DEOD_ECOLI 2 238 DBREF 3UT6 B 1 237 UNP P0ABP8 DEOD_ECOLI 2 238 DBREF 3UT6 C 1 237 UNP P0ABP8 DEOD_ECOLI 2 238 SEQRES 1 A 237 ALA THR PRO HIS ILE ASN ALA GLU MET GLY ASP PHE ALA SEQRES 2 A 237 ASP VAL VAL LEU MET PRO GLY ASP PRO LEU ARG ALA LYS SEQRES 3 A 237 TYR ILE ALA GLU THR PHE LEU GLU ASP ALA ARG GLU VAL SEQRES 4 A 237 ASN ASN VAL ARG GLY MET LEU GLY PHE THR GLY THR TYR SEQRES 5 A 237 LYS GLY ARG LYS ILE SER VAL MET GLY HIS GLY MET GLY SEQRES 6 A 237 ILE PRO SER CYS SER ILE TYR THR LYS GLU LEU ILE THR SEQRES 7 A 237 ASP PHE GLY VAL LYS LYS ILE ILE ARG VAL GLY SER CYS SEQRES 8 A 237 GLY ALA VAL LEU PRO HIS VAL LYS LEU ARG ASP VAL VAL SEQRES 9 A 237 ILE GLY MET GLY ALA CYS THR ASP SER LYS VAL ASN ARG SEQRES 10 A 237 ILE ARG PHE LYS ASP HIS ASP PHE ALA ALA ILE ALA ASP SEQRES 11 A 237 PHE ASP MET VAL ARG ASN ALA VAL ASP ALA ALA LYS ALA SEQRES 12 A 237 LEU GLY ILE ASP ALA ARG VAL GLY ASN LEU PHE SER ALA SEQRES 13 A 237 ASP LEU PHE TYR SER PRO ASP GLY GLU MET PHE ASP VAL SEQRES 14 A 237 MET GLU LYS TYR GLY ILE LEU GLY VAL GLU MET GLU ALA SEQRES 15 A 237 ALA GLY ILE TYR GLY VAL ALA ALA GLU PHE GLY ALA LYS SEQRES 16 A 237 ALA LEU THR ILE CYS THR VAL SER ASP HIS ILE ARG THR SEQRES 17 A 237 HIS GLU GLN THR THR ALA ALA GLU ARG GLN THR THR PHE SEQRES 18 A 237 ASN ASP MET ILE LYS ILE ALA LEU GLU SER VAL LEU LEU SEQRES 19 A 237 GLY ASP LYS SEQRES 1 B 237 ALA THR PRO HIS ILE ASN ALA GLU MET GLY ASP PHE ALA SEQRES 2 B 237 ASP VAL VAL LEU MET PRO GLY ASP PRO LEU ARG ALA LYS SEQRES 3 B 237 TYR ILE ALA GLU THR PHE LEU GLU ASP ALA ARG GLU VAL SEQRES 4 B 237 ASN ASN VAL ARG GLY MET LEU GLY PHE THR GLY THR TYR SEQRES 5 B 237 LYS GLY ARG LYS ILE SER VAL MET GLY HIS GLY MET GLY SEQRES 6 B 237 ILE PRO SER CYS SER ILE TYR THR LYS GLU LEU ILE THR SEQRES 7 B 237 ASP PHE GLY VAL LYS LYS ILE ILE ARG VAL GLY SER CYS SEQRES 8 B 237 GLY ALA VAL LEU PRO HIS VAL LYS LEU ARG ASP VAL VAL SEQRES 9 B 237 ILE GLY MET GLY ALA CYS THR ASP SER LYS VAL ASN ARG SEQRES 10 B 237 ILE ARG PHE LYS ASP HIS ASP PHE ALA ALA ILE ALA ASP SEQRES 11 B 237 PHE ASP MET VAL ARG ASN ALA VAL ASP ALA ALA LYS ALA SEQRES 12 B 237 LEU GLY ILE ASP ALA ARG VAL GLY ASN LEU PHE SER ALA SEQRES 13 B 237 ASP LEU PHE TYR SER PRO ASP GLY GLU MET PHE ASP VAL SEQRES 14 B 237 MET GLU LYS TYR GLY ILE LEU GLY VAL GLU MET GLU ALA SEQRES 15 B 237 ALA GLY ILE TYR GLY VAL ALA ALA GLU PHE GLY ALA LYS SEQRES 16 B 237 ALA LEU THR ILE CYS THR VAL SER ASP HIS ILE ARG THR SEQRES 17 B 237 HIS GLU GLN THR THR ALA ALA GLU ARG GLN THR THR PHE SEQRES 18 B 237 ASN ASP MET ILE LYS ILE ALA LEU GLU SER VAL LEU LEU SEQRES 19 B 237 GLY ASP LYS SEQRES 1 C 237 ALA THR PRO HIS ILE ASN ALA GLU MET GLY ASP PHE ALA SEQRES 2 C 237 ASP VAL VAL LEU MET PRO GLY ASP PRO LEU ARG ALA LYS SEQRES 3 C 237 TYR ILE ALA GLU THR PHE LEU GLU ASP ALA ARG GLU VAL SEQRES 4 C 237 ASN ASN VAL ARG GLY MET LEU GLY PHE THR GLY THR TYR SEQRES 5 C 237 LYS GLY ARG LYS ILE SER VAL MET GLY HIS GLY MET GLY SEQRES 6 C 237 ILE PRO SER CYS SER ILE TYR THR LYS GLU LEU ILE THR SEQRES 7 C 237 ASP PHE GLY VAL LYS LYS ILE ILE ARG VAL GLY SER CYS SEQRES 8 C 237 GLY ALA VAL LEU PRO HIS VAL LYS LEU ARG ASP VAL VAL SEQRES 9 C 237 ILE GLY MET GLY ALA CYS THR ASP SER LYS VAL ASN ARG SEQRES 10 C 237 ILE ARG PHE LYS ASP HIS ASP PHE ALA ALA ILE ALA ASP SEQRES 11 C 237 PHE ASP MET VAL ARG ASN ALA VAL ASP ALA ALA LYS ALA SEQRES 12 C 237 LEU GLY ILE ASP ALA ARG VAL GLY ASN LEU PHE SER ALA SEQRES 13 C 237 ASP LEU PHE TYR SER PRO ASP GLY GLU MET PHE ASP VAL SEQRES 14 C 237 MET GLU LYS TYR GLY ILE LEU GLY VAL GLU MET GLU ALA SEQRES 15 C 237 ALA GLY ILE TYR GLY VAL ALA ALA GLU PHE GLY ALA LYS SEQRES 16 C 237 ALA LEU THR ILE CYS THR VAL SER ASP HIS ILE ARG THR SEQRES 17 C 237 HIS GLU GLN THR THR ALA ALA GLU ARG GLN THR THR PHE SEQRES 18 C 237 ASN ASP MET ILE LYS ILE ALA LEU GLU SER VAL LEU LEU SEQRES 19 C 237 GLY ASP LYS HET FMC A 300 19 HET PO4 A 301 5 HET FMC B 300 19 HET PO4 B 301 5 HET PO4 B 302 5 HET FMC C 300 19 HET PO4 C 301 5 HET PO4 C 302 5 HETNAM FMC (1S)-1-(7-AMINO-1H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-1,4- HETNAM 2 FMC ANHYDRO-D-RIBITOL HETNAM PO4 PHOSPHATE ION FORMUL 4 FMC 3(C10 H13 N5 O4) FORMUL 5 PO4 5(O4 P 3-) FORMUL 12 HOH *623(H2 O) HELIX 1 1 ASP A 21 LEU A 33 1 13 HELIX 2 2 ASN A 41 MET A 45 5 5 HELIX 3 3 GLY A 65 PHE A 80 1 16 HELIX 4 4 LYS A 114 PHE A 120 1 7 HELIX 5 5 ASP A 130 GLY A 145 1 16 HELIX 6 6 GLU A 165 TYR A 173 1 9 HELIX 7 7 GLU A 181 GLY A 193 1 13 HELIX 8 8 ALA A 215 THR A 220 1 6 HELIX 9 9 PHE A 221 LYS A 237 1 17 HELIX 10 10 LEU B 23 LEU B 33 1 11 HELIX 11 11 ASN B 41 MET B 45 5 5 HELIX 12 12 GLY B 65 GLY B 81 1 17 HELIX 13 13 LYS B 114 PHE B 120 1 7 HELIX 14 14 ASP B 130 LEU B 144 1 15 HELIX 15 15 GLU B 165 TYR B 173 1 9 HELIX 16 16 GLU B 181 GLY B 193 1 13 HELIX 17 17 ALA B 214 LYS B 237 1 24 HELIX 18 18 ASP C 21 LEU C 33 1 13 HELIX 19 19 ASN C 41 MET C 45 5 5 HELIX 20 20 GLY C 65 PHE C 80 1 16 HELIX 21 21 LYS C 114 PHE C 120 1 7 HELIX 22 22 ASP C 130 LEU C 144 1 15 HELIX 23 23 GLU C 165 TYR C 173 1 9 HELIX 24 24 GLU C 181 GLY C 193 1 13 HELIX 25 25 THR C 213 LYS C 237 1 25 SHEET 1 A 9 GLU A 34 ASN A 40 0 SHEET 2 A 9 GLY A 47 TYR A 52 -1 O GLY A 47 N VAL A 39 SHEET 3 A 9 ARG A 55 MET A 60 -1 O VAL A 59 N PHE A 48 SHEET 4 A 9 VAL A 15 MET A 18 1 N LEU A 17 O SER A 58 SHEET 5 A 9 LYS A 84 ALA A 93 1 O ILE A 86 N VAL A 16 SHEET 6 A 9 GLY A 177 GLU A 179 -1 O VAL A 178 N GLY A 92 SHEET 7 A 9 ALA A 148 SER A 155 1 N PHE A 154 O GLU A 179 SHEET 8 A 9 VAL A 103 THR A 111 1 N ILE A 105 O ARG A 149 SHEET 9 A 9 ALA A 127 ILE A 128 -1 O ALA A 127 N ALA A 109 SHEET 1 B 8 GLU A 34 ASN A 40 0 SHEET 2 B 8 GLY A 47 TYR A 52 -1 O GLY A 47 N VAL A 39 SHEET 3 B 8 ARG A 55 MET A 60 -1 O VAL A 59 N PHE A 48 SHEET 4 B 8 VAL A 15 MET A 18 1 N LEU A 17 O SER A 58 SHEET 5 B 8 LYS A 84 ALA A 93 1 O ILE A 86 N VAL A 16 SHEET 6 B 8 LYS A 195 HIS A 205 1 O THR A 201 N GLY A 89 SHEET 7 B 8 VAL A 103 THR A 111 -1 N VAL A 104 O CYS A 200 SHEET 8 B 8 ALA A 127 ILE A 128 -1 O ALA A 127 N ALA A 109 SHEET 1 C10 GLU B 34 ASN B 40 0 SHEET 2 C10 GLY B 47 TYR B 52 -1 O GLY B 47 N VAL B 39 SHEET 3 C10 ARG B 55 MET B 60 -1 O ILE B 57 N GLY B 50 SHEET 4 C10 VAL B 15 MET B 18 1 N LEU B 17 O SER B 58 SHEET 5 C10 LYS B 84 ALA B 93 1 O ILE B 86 N MET B 18 SHEET 6 C10 LYS B 195 HIS B 205 1 O ILE B 199 N ARG B 87 SHEET 7 C10 VAL B 103 THR B 111 -1 N VAL B 104 O CYS B 200 SHEET 8 C10 ALA B 148 SER B 155 1 O LEU B 153 N CYS B 110 SHEET 9 C10 GLY B 177 GLU B 179 1 O GLU B 179 N PHE B 154 SHEET 10 C10 LYS B 84 ALA B 93 -1 N GLY B 92 O VAL B 178 SHEET 1 D 9 GLU C 34 ASN C 40 0 SHEET 2 D 9 GLY C 47 TYR C 52 -1 O GLY C 47 N VAL C 39 SHEET 3 D 9 ARG C 55 MET C 60 -1 O VAL C 59 N PHE C 48 SHEET 4 D 9 VAL C 15 MET C 18 1 N LEU C 17 O SER C 58 SHEET 5 D 9 LYS C 84 ALA C 93 1 O ILE C 86 N VAL C 16 SHEET 6 D 9 GLY C 177 GLU C 179 -1 O VAL C 178 N GLY C 92 SHEET 7 D 9 ALA C 148 SER C 155 1 N PHE C 154 O GLU C 179 SHEET 8 D 9 VAL C 103 THR C 111 1 N ILE C 105 O ARG C 149 SHEET 9 D 9 ALA C 127 ILE C 128 -1 O ALA C 127 N ALA C 109 SHEET 1 E 8 GLU C 34 ASN C 40 0 SHEET 2 E 8 GLY C 47 TYR C 52 -1 O GLY C 47 N VAL C 39 SHEET 3 E 8 ARG C 55 MET C 60 -1 O VAL C 59 N PHE C 48 SHEET 4 E 8 VAL C 15 MET C 18 1 N LEU C 17 O SER C 58 SHEET 5 E 8 LYS C 84 ALA C 93 1 O ILE C 86 N VAL C 16 SHEET 6 E 8 LYS C 195 HIS C 205 1 O ILE C 199 N ARG C 87 SHEET 7 E 8 VAL C 103 THR C 111 -1 N VAL C 104 O CYS C 200 SHEET 8 E 8 ALA C 127 ILE C 128 -1 O ALA C 127 N ALA C 109 CISPEP 1 GLN B 211 THR B 212 0 -0.16 SITE 1 AC1 17 ARG A 87 SER A 90 CYS A 91 GLY A 92 SITE 2 AC1 17 PHE A 159 VAL A 178 GLU A 179 MET A 180 SITE 3 AC1 17 GLU A 181 SER A 203 ASP A 204 PO4 A 301 SITE 4 AC1 17 HOH A 304 HOH A 325 HOH A 611 HIS C 4 SITE 5 AC1 17 ARG C 43 SITE 1 AC2 8 PRO A 19 GLY A 20 ARG A 24 ARG A 87 SITE 2 AC2 8 GLY A 89 SER A 90 FMC A 300 ARG C 43 SITE 1 AC3 17 HIS B 4 MET B 64 ARG B 87 SER B 90 SITE 2 AC3 17 CYS B 91 GLY B 92 PHE B 159 VAL B 178 SITE 3 AC3 17 GLU B 179 MET B 180 GLU B 181 ASP B 204 SITE 4 AC3 17 ILE B 206 HOH B 244 HOH B 465 HOH B 466 SITE 5 AC3 17 HOH B 549 SITE 1 AC4 9 GLY B 20 ASP B 21 VAL B 88 GLY B 89 SITE 2 AC4 9 SER B 90 HOH B 244 HOH B 282 PO4 B 302 SITE 3 AC4 9 HOH B 549 SITE 1 AC5 4 ASP B 21 ARG B 24 ARG B 217 PO4 B 301 SITE 1 AC6 16 HIS A 4 ARG C 87 SER C 90 CYS C 91 SITE 2 AC6 16 GLY C 92 PHE C 159 VAL C 178 GLU C 179 SITE 3 AC6 16 MET C 180 GLU C 181 ASP C 204 ILE C 206 SITE 4 AC6 16 HOH C 286 HOH C 296 HOH C 318 HOH C 362 SITE 1 AC7 5 ASP C 21 ARG C 24 PO4 C 302 HOH C 341 SITE 2 AC7 5 HOH C 371 SITE 1 AC8 13 PRO C 19 GLY C 20 ASP C 21 ARG C 24 SITE 2 AC8 13 VAL C 88 GLY C 89 SER C 90 PHE C 221 SITE 3 AC8 13 HOH C 264 HOH C 286 HOH C 296 PO4 C 301 SITE 4 AC8 13 HOH C 502 CRYST1 120.769 120.769 239.082 90.00 90.00 120.00 P 61 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008280 0.004781 0.000000 0.00000 SCALE2 0.000000 0.009561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004183 0.00000