HEADER HYDROLASE/HYDROLASE INHIBITOR 02-DEC-11 3UWJ TITLE HUMAN THROMBIN IN COMPLEX WITH MI353 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 EC: 3.4.21.5; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: THROMBIN HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 EC: 3.4.21.5; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HIRUDIN VARIANT-2; COMPND 11 CHAIN: I; COMPND 12 FRAGMENT: RESIDUES IN UNP 60-72; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS; SOURCE 12 ORGANISM_COMMON: MEDICINAL LEECH; SOURCE 13 ORGANISM_TAXID: 6421; SOURCE 14 OTHER_DETAILS: SYNTHETIC FRAGMENT OF HIRUDO MEDICINALIS KEYWDS SERINE PROTEASE, KRINGLE, HYDROLASE, BLOOD COAGULATION, BLOOD KEYWDS 2 CLOTTING, CONVERTION OF FIBRINOGEN TO FIBRIN, CLEAVAGE ON PAIRS OF KEYWDS 3 BASIC RESIDUES, HIRUDIN, GLYCOSYLATION, BLOOD, HYDROLASE-HYDROLASE KEYWDS 4 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.BIELA,A.HEINE,G.KLEBE REVDAT 5 06-DEC-23 3UWJ 1 REMARK REVDAT 4 08-NOV-23 3UWJ 1 HETSYN REVDAT 3 29-JUL-20 3UWJ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 13-JUL-16 3UWJ 1 JRNL REVDAT 1 12-DEC-12 3UWJ 0 JRNL AUTH A.BIELA,F.SIELAFF,F.TERWESTEN,A.HEINE,T.STEINMETZER,G.KLEBE JRNL TITL LIGAND BINDING STEPWISE DISRUPTS WATER NETWORK IN THROMBIN: JRNL TITL 2 ENTHALPIC AND ENTROPIC CHANGES REVEAL CLASSICAL HYDROPHOBIC JRNL TITL 3 EFFECT JRNL REF J.MED.CHEM. V. 55 6094 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22612268 JRNL DOI 10.1021/JM300337Q REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 52016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.4984 - 3.9955 0.92 2638 149 0.1491 0.1488 REMARK 3 2 3.9955 - 3.1742 0.94 2672 123 0.1393 0.1640 REMARK 3 3 3.1742 - 2.7738 0.95 2672 157 0.1614 0.1935 REMARK 3 4 2.7738 - 2.5206 0.95 2671 155 0.1691 0.1946 REMARK 3 5 2.5206 - 2.3401 0.96 2704 148 0.1542 0.1771 REMARK 3 6 2.3401 - 2.2022 0.95 2674 145 0.1587 0.1817 REMARK 3 7 2.2022 - 2.0920 0.96 2688 134 0.1486 0.1655 REMARK 3 8 2.0920 - 2.0010 0.96 2685 132 0.1520 0.1867 REMARK 3 9 2.0010 - 1.9240 0.95 2647 143 0.1535 0.1779 REMARK 3 10 1.9240 - 1.8577 0.94 2624 130 0.1594 0.1984 REMARK 3 11 1.8577 - 1.7996 0.94 2662 135 0.1569 0.1956 REMARK 3 12 1.7996 - 1.7482 0.94 2625 148 0.1601 0.2280 REMARK 3 13 1.7482 - 1.7022 0.92 2594 133 0.1734 0.1984 REMARK 3 14 1.7022 - 1.6607 0.91 2508 155 0.1789 0.2128 REMARK 3 15 1.6607 - 1.6229 0.91 2548 120 0.1839 0.1850 REMARK 3 16 1.6229 - 1.5884 0.91 2511 171 0.1987 0.2130 REMARK 3 17 1.5884 - 1.5566 0.89 2474 115 0.2095 0.2103 REMARK 3 18 1.5566 - 1.5273 0.87 2429 128 0.2286 0.2548 REMARK 3 19 1.5273 - 1.5000 0.84 2355 114 0.2629 0.2778 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 59.12 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.30470 REMARK 3 B22 (A**2) : -1.97830 REMARK 3 B33 (A**2) : 0.67350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.21690 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2574 REMARK 3 ANGLE : 1.095 3499 REMARK 3 CHIRALITY : 0.074 366 REMARK 3 PLANARITY : 0.005 443 REMARK 3 DIHEDRAL : 16.885 1019 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN H AND RESID 16:41) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1912 -2.7393 11.3984 REMARK 3 T TENSOR REMARK 3 T11: 0.1583 T22: 0.1660 REMARK 3 T33: 0.1219 T12: 0.0852 REMARK 3 T13: -0.0423 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: 0.3559 L22: 0.4501 REMARK 3 L33: 0.4252 L12: -0.2204 REMARK 3 L13: -0.1965 L23: 0.1678 REMARK 3 S TENSOR REMARK 3 S11: 0.2622 S12: 0.2747 S13: -0.2804 REMARK 3 S21: -0.1951 S22: -0.1346 S23: 0.1205 REMARK 3 S31: 0.1940 S32: -0.0116 S33: 0.1996 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN H AND RESID 42:83) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2362 -1.0897 8.7928 REMARK 3 T TENSOR REMARK 3 T11: 0.1622 T22: 0.2244 REMARK 3 T33: 0.0878 T12: 0.1206 REMARK 3 T13: -0.0005 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.2519 L22: 0.4817 REMARK 3 L33: 0.2643 L12: -0.2375 REMARK 3 L13: 0.2162 L23: -0.1919 REMARK 3 S TENSOR REMARK 3 S11: 0.2504 S12: 0.4313 S13: 0.0088 REMARK 3 S21: -0.2750 S22: -0.2554 S23: -0.1202 REMARK 3 S31: 0.1207 S32: 0.1977 S33: -0.0825 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN H AND RESID 84:111) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7574 -0.9618 16.6078 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.1928 REMARK 3 T33: 0.1161 T12: 0.0636 REMARK 3 T13: 0.0280 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.3978 L22: 0.5437 REMARK 3 L33: 0.6968 L12: 0.4079 REMARK 3 L13: 0.0098 L23: 0.2686 REMARK 3 S TENSOR REMARK 3 S11: 0.2154 S12: 0.2272 S13: 0.0082 REMARK 3 S21: 0.0086 S22: -0.0405 S23: -0.1990 REMARK 3 S31: 0.0589 S32: 0.2368 S33: 0.3342 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN H AND RESID 112:144) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3689 5.9721 23.3798 REMARK 3 T TENSOR REMARK 3 T11: 0.1099 T22: 0.0914 REMARK 3 T33: 0.0809 T12: 0.0306 REMARK 3 T13: -0.0092 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.4249 L22: 0.2881 REMARK 3 L33: 0.0929 L12: -0.3484 REMARK 3 L13: -0.0693 L23: 0.0205 REMARK 3 S TENSOR REMARK 3 S11: 0.0318 S12: 0.0445 S13: 0.0378 REMARK 3 S21: 0.0002 S22: -0.0264 S23: -0.0328 REMARK 3 S31: -0.0337 S32: 0.0146 S33: -0.0030 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN H AND RESID 145:173) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9295 -9.5458 26.8870 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.0639 REMARK 3 T33: 0.1126 T12: 0.0133 REMARK 3 T13: -0.0239 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.5870 L22: 0.2362 REMARK 3 L33: 0.3678 L12: -0.3633 REMARK 3 L13: 0.2537 L23: -0.1885 REMARK 3 S TENSOR REMARK 3 S11: 0.0304 S12: 0.0098 S13: -0.2680 REMARK 3 S21: 0.0458 S22: -0.0115 S23: 0.2637 REMARK 3 S31: 0.1602 S32: -0.0157 S33: -0.0843 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN H AND RESID 174:232) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6306 -4.0860 28.0656 REMARK 3 T TENSOR REMARK 3 T11: 0.1034 T22: 0.0818 REMARK 3 T33: 0.1085 T12: 0.0168 REMARK 3 T13: 0.0014 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.4902 L22: 0.1565 REMARK 3 L33: 0.3377 L12: -0.1199 REMARK 3 L13: 0.1573 L23: -0.0530 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: -0.0568 S13: -0.1400 REMARK 3 S21: 0.0366 S22: 0.0064 S23: 0.0582 REMARK 3 S31: 0.0809 S32: -0.0078 S33: 0.0030 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN H AND RESID 233:246) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8778 8.8788 21.9780 REMARK 3 T TENSOR REMARK 3 T11: 0.1467 T22: 0.1565 REMARK 3 T33: 0.2533 T12: -0.0241 REMARK 3 T13: 0.0193 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.8286 L22: 1.0063 REMARK 3 L33: 2.4111 L12: 0.6844 REMARK 3 L13: -1.3889 L23: -1.1825 REMARK 3 S TENSOR REMARK 3 S11: 0.0796 S12: -0.0402 S13: 0.2517 REMARK 3 S21: 0.0430 S22: -0.0120 S23: -0.1727 REMARK 3 S31: -0.2896 S32: 0.1844 S33: -0.0368 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN I AND RESID 55:65) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0755 -1.5468 -3.5295 REMARK 3 T TENSOR REMARK 3 T11: 0.4092 T22: 0.5288 REMARK 3 T33: 0.1014 T12: 0.1911 REMARK 3 T13: 0.0410 T23: -0.1130 REMARK 3 L TENSOR REMARK 3 L11: 0.0037 L22: 0.1747 REMARK 3 L33: 0.0397 L12: -0.0231 REMARK 3 L13: -0.0109 L23: 0.0823 REMARK 3 S TENSOR REMARK 3 S11: 0.0774 S12: 0.1008 S13: 0.0070 REMARK 3 S21: -0.1502 S22: 0.0265 S23: -0.0512 REMARK 3 S31: -0.1073 S32: 0.0336 S33: 0.0936 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN L AND RESID 1C:11) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8750 15.3150 18.2363 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.1216 REMARK 3 T33: 0.1151 T12: 0.0562 REMARK 3 T13: 0.0051 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.3329 L22: 0.9271 REMARK 3 L33: 0.4036 L12: -0.4065 REMARK 3 L13: 0.1526 L23: -0.2205 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: 0.0597 S13: 0.1129 REMARK 3 S21: -0.1042 S22: -0.1250 S23: -0.1093 REMARK 3 S31: -0.2332 S32: -0.0512 S33: 0.0295 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN L AND RESID 12:14C) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8880 7.5334 22.7639 REMARK 3 T TENSOR REMARK 3 T11: 0.1081 T22: 0.1737 REMARK 3 T33: 0.1190 T12: 0.0426 REMARK 3 T13: 0.0034 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.0303 L22: 0.0703 REMARK 3 L33: 0.0608 L12: -0.0055 REMARK 3 L13: 0.0000 L23: -0.0156 REMARK 3 S TENSOR REMARK 3 S11: 0.0187 S12: -0.0357 S13: -0.1069 REMARK 3 S21: -0.0417 S22: -0.0680 S23: 0.0349 REMARK 3 S31: -0.0168 S32: -0.1345 S33: 0.0296 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN L AND RESID 14D:14K) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2797 5.1573 33.1978 REMARK 3 T TENSOR REMARK 3 T11: 0.1325 T22: 0.1637 REMARK 3 T33: 0.1459 T12: 0.0362 REMARK 3 T13: 0.0526 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0822 L22: 0.2279 REMARK 3 L33: 0.3601 L12: 0.1147 REMARK 3 L13: 0.0852 L23: 0.0224 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: -0.0694 S13: -0.0014 REMARK 3 S21: 0.0061 S22: 0.0918 S23: 0.0027 REMARK 3 S31: -0.0578 S32: -0.1824 S33: -0.0535 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UWJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : COLLIMATING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55148 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46800 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H8D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 8000, 20MM SODIUM PHOSPHATE, REMARK 280 175MM SODIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.15000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.15000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H1062 LIES ON A SPECIAL POSITION. REMARK 375 HOH H1267 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR L 1H REMARK 465 PHE L 1G REMARK 465 GLY L 1F REMARK 465 SER L 1E REMARK 465 GLY L 1D REMARK 465 ASP L 14L REMARK 465 GLY L 14M REMARK 465 ARG L 15 REMARK 465 TRP H 148 REMARK 465 THR H 149 REMARK 465 ALA H 149A REMARK 465 ASN H 149B REMARK 465 VAL H 149C REMARK 465 GLY H 149D REMARK 465 LYS H 149E REMARK 465 GLU H 247 REMARK 465 ASN I 53 REMARK 465 GLY I 54 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 1C CG CD OE1 OE2 REMARK 470 ASP H 186A CG OD1 OD2 REMARK 470 LYS H 236 CG CD CE NZ REMARK 470 LYS H 240 CG CD CE NZ REMARK 470 GLU I 58 CG CD OE1 OE2 REMARK 470 GLN I 65 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE L 7 -88.63 -129.47 REMARK 500 TYR H 60A 83.12 -154.98 REMARK 500 ASN H 60G 82.99 -156.33 REMARK 500 HIS H 71 -62.63 -130.14 REMARK 500 ILE H 79 -59.26 -126.88 REMARK 500 ASN H 95 79.88 -100.81 REMARK 500 GLU H 97A -73.08 -112.95 REMARK 500 SER H 195 130.55 -32.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 TIF H 303 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE THROMBIN INHIBITOR REMARK 630 MOLECULE NAME: N-(BENZYLSULFONYL)-D-LEUCYL-N-(4- REMARK 630 CARBAMIMIDOYLBENZYL)-L-PROLINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 TIF H 302 REMARK 630 TIF H 303 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PMS DLE PRO 00S REMARK 630 DETAILS: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RLW RELATED DB: PDB REMARK 900 RELATED ID: 3RLY RELATED DB: PDB REMARK 900 RELATED ID: 3RM0 RELATED DB: PDB REMARK 900 RELATED ID: 3RM2 RELATED DB: PDB REMARK 900 RELATED ID: 3RML RELATED DB: PDB REMARK 900 RELATED ID: 3RMM RELATED DB: PDB DBREF 3UWJ L 1H 15 UNP P00734 THRB_HUMAN 328 363 DBREF 3UWJ H 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 3UWJ I 53 65 UNP P09945 HIRV2_HIRME 60 72 SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 I 13 ASN GLY ASP PHE GLU GLU ILE PRO GLU GLU TYS LEU GLN MODRES 3UWJ ASN H 60G ASN GLYCOSYLATION SITE MODRES 3UWJ TYS I 63 TYR O-SULFO-L-TYROSINE HET TYS I 63 16 HET NAG H 260G 14 HET TIF H 302 40 HET TIF H 303 11 HET PO4 H 304 5 HET NA H 305 1 HET NA H 306 1 HETNAM TYS O-SULFO-L-TYROSINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM TIF N-(BENZYLSULFONYL)-D-LEUCYL-N-(4-CARBAMIMIDOYLBENZYL)- HETNAM 2 TIF L-PROLINAMIDE HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 TYS C9 H11 N O6 S FORMUL 4 NAG C8 H15 N O6 FORMUL 5 TIF 2(C26 H35 N5 O4 S) FORMUL 7 PO4 O4 P 3- FORMUL 8 NA 2(NA 1+) FORMUL 10 HOH *349(H2 O) HELIX 1 1 PHE L 7 SER L 11 5 5 HELIX 2 2 THR L 14B TYR L 14J 1 9 HELIX 3 3 ALA H 55 CYS H 58 5 4 HELIX 4 4 PRO H 60B ASP H 60E 5 4 HELIX 5 5 THR H 60I ASN H 62 5 3 HELIX 6 6 ASP H 125 LEU H 130 1 9 HELIX 7 7 GLU H 164 SER H 171 1 8 HELIX 8 8 LYS H 185 GLY H 186C 5 5 HELIX 9 9 LEU H 234 GLY H 246 1 13 HELIX 10 10 PRO I 60 LEU I 64 5 5 SHEET 1 A 7 SER H 20 ASP H 21 0 SHEET 2 A 7 GLN H 156 PRO H 161 -1 O VAL H 157 N SER H 20 SHEET 3 A 7 LYS H 135 GLY H 140 -1 N VAL H 138 O VAL H 158 SHEET 4 A 7 PRO H 198 LYS H 202 -1 O VAL H 200 N ARG H 137 SHEET 5 A 7 TRP H 207 TRP H 215 -1 O TYR H 208 N MET H 201 SHEET 6 A 7 GLY H 226 HIS H 230 -1 O PHE H 227 N TRP H 215 SHEET 7 A 7 MET H 180 ALA H 183 -1 N PHE H 181 O TYR H 228 SHEET 1 B 7 GLN H 30 ARG H 35 0 SHEET 2 B 7 GLU H 39 LEU H 46 -1 O GLU H 39 N ARG H 35 SHEET 3 B 7 TRP H 51 THR H 54 -1 O LEU H 53 N SER H 45 SHEET 4 B 7 ALA H 104 LEU H 108 -1 O ALA H 104 N THR H 54 SHEET 5 B 7 LYS H 81 ILE H 90 -1 N GLU H 86 O LYS H 107 SHEET 6 B 7 LEU H 64 ILE H 68 -1 N ILE H 68 O LYS H 81 SHEET 7 B 7 GLN H 30 ARG H 35 -1 N PHE H 34 O LEU H 65 SHEET 1 C 2 LEU H 60 TYR H 60A 0 SHEET 2 C 2 LYS H 60F ASN H 60G-1 O LYS H 60F N TYR H 60A SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.03 SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.03 SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.03 SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.05 LINK ND2 ASN H 60G C1 NAG H 260G 1555 1555 1.44 LINK C GLU I 62 N TYS I 63 1555 1555 1.33 LINK C TYS I 63 N LEU I 64 1555 1555 1.33 CISPEP 1 SER H 36A PRO H 37 0 -4.81 CRYST1 70.300 71.200 72.400 90.00 100.70 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014225 0.000000 0.002688 0.00000 SCALE2 0.000000 0.014045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014057 0.00000