HEADER TRANSFERASE 02-DEC-11 3UWP TITLE CRYSTAL STRUCTURE OF DOT1L IN COMPLEX WITH 5-IODOTUBERCIDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-420; COMPND 5 SYNONYM: DOT1-LIKE PROTEIN, HISTONE H3-K79 METHYLTRANSFERASE, H3-K79- COMPND 6 HMTASE, LYSINE N-METHYLTRANSFERASE 4; COMPND 7 EC: 2.1.1.43; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DOT1L, KIAA1814, KMT4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS HISTONE, METHYLTRANSFERASE, EPIGENETICS, TUBERCIDIN, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.YU,W.TEMPEL,D.SMIL,M.SCHAPIRA,Y.LI,M.VEDADI,K.T.NGUYEN, AUTHOR 2 A.K.WERNIMONT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT, AUTHOR 3 P.J.BROWN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 28-FEB-24 3UWP 1 REMARK SEQADV LINK REVDAT 3 16-MAY-18 3UWP 1 JRNL REVDAT 2 08-NOV-17 3UWP 1 REMARK REVDAT 1 14-MAR-12 3UWP 0 JRNL AUTH W.YU,E.J.CHORY,A.K.WERNIMONT,W.TEMPEL,A.SCOPTON, JRNL AUTH 2 A.FEDERATION,J.J.MARINEAU,J.QI,D.BARSYTE-LOVEJOY,J.YI, JRNL AUTH 3 R.MARCELLUS,R.E.IACOB,J.R.ENGEN,C.GRIFFIN,A.AMAN, JRNL AUTH 4 E.WIENHOLDS,F.LI,J.PINEDA,G.ESTIU,T.SHATSEVA,T.HAJIAN, JRNL AUTH 5 R.AL-AWAR,J.E.DICK,M.VEDADI,P.J.BROWN,C.H.ARROWSMITH, JRNL AUTH 6 J.E.BRADNER,M.SCHAPIRA JRNL TITL CATALYTIC SITE REMODELLING OF THE DOT1L METHYLTRANSFERASE BY JRNL TITL 2 SELECTIVE INHIBITORS. JRNL REF NAT COMMUN V. 3 1288 2012 JRNL REFN ESSN 2041-1723 JRNL PMID 23250418 JRNL DOI 10.1038/NCOMMS2304 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 43105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : FROM PDB ENTRY 3QOW REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.853 REMARK 3 FREE R VALUE TEST SET COUNT : 2092 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2785 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2669 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.95900 REMARK 3 B22 (A**2) : -1.95900 REMARK 3 B33 (A**2) : 2.93900 REMARK 3 B12 (A**2) : -0.98000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.927 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2808 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1851 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3839 ; 1.327 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4498 ; 0.879 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 5.435 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;32.233 ;23.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 439 ;13.411 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.800 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3161 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 588 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 344 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1790 58.3140 3.2350 REMARK 3 T TENSOR REMARK 3 T11: 0.0182 T22: 0.0205 REMARK 3 T33: 0.0396 T12: 0.0071 REMARK 3 T13: 0.0015 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 3.6851 L22: 1.2583 REMARK 3 L33: 0.4925 L12: -1.4903 REMARK 3 L13: 0.0403 L23: -0.1079 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: 0.0761 S13: -0.0151 REMARK 3 S21: -0.0469 S22: -0.0137 S23: 0.0620 REMARK 3 S31: 0.0572 S32: -0.0295 S33: 0.0305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3UWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91963 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43269 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.97300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M SODIUM FORMATE, 0.1M SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.68067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.84033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.76050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.92017 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.60083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 345 REMARK 465 GLN A 346 REMARK 465 ARG A 347 REMARK 465 GLU A 348 REMARK 465 SER A 349 REMARK 465 LYS A 350 REMARK 465 SER A 351 REMARK 465 ASN A 352 REMARK 465 ALA A 353 REMARK 465 ALA A 354 REMARK 465 THR A 355 REMARK 465 PRO A 356 REMARK 465 THR A 357 REMARK 465 LYS A 358 REMARK 465 GLY A 359 REMARK 465 PRO A 360 REMARK 465 GLU A 361 REMARK 465 GLY A 362 REMARK 465 LYS A 363 REMARK 465 VAL A 364 REMARK 465 ALA A 365 REMARK 465 GLY A 366 REMARK 465 PRO A 367 REMARK 465 ALA A 368 REMARK 465 ASP A 369 REMARK 465 ALA A 370 REMARK 465 PRO A 371 REMARK 465 MET A 372 REMARK 465 ASP A 373 REMARK 465 SER A 374 REMARK 465 GLY A 375 REMARK 465 ALA A 376 REMARK 465 GLU A 377 REMARK 465 GLU A 378 REMARK 465 GLU A 379 REMARK 465 LYS A 380 REMARK 465 ALA A 381 REMARK 465 GLY A 382 REMARK 465 ALA A 383 REMARK 465 ALA A 384 REMARK 465 THR A 385 REMARK 465 VAL A 386 REMARK 465 LYS A 387 REMARK 465 LYS A 388 REMARK 465 PRO A 389 REMARK 465 SER A 390 REMARK 465 PRO A 391 REMARK 465 SER A 392 REMARK 465 LYS A 393 REMARK 465 ALA A 394 REMARK 465 ARG A 395 REMARK 465 LYS A 396 REMARK 465 LYS A 397 REMARK 465 LYS A 398 REMARK 465 LEU A 399 REMARK 465 ASN A 400 REMARK 465 LYS A 401 REMARK 465 LYS A 402 REMARK 465 GLY A 403 REMARK 465 ARG A 404 REMARK 465 LYS A 405 REMARK 465 MET A 406 REMARK 465 ALA A 407 REMARK 465 GLY A 408 REMARK 465 ARG A 409 REMARK 465 LYS A 410 REMARK 465 ARG A 411 REMARK 465 GLY A 412 REMARK 465 ARG A 413 REMARK 465 PRO A 414 REMARK 465 LYS A 415 REMARK 465 LYS A 416 REMARK 465 MET A 417 REMARK 465 ASN A 418 REMARK 465 THR A 419 REMARK 465 ALA A 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 29 CD CE NZ REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 ILE A 61 CG1 CG2 CD1 REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 LYS A 77 CD CE NZ REMARK 470 GLN A 94 CG CD OE1 NE2 REMARK 470 LYS A 97 CD CE NZ REMARK 470 ASN A 99 CG OD1 ND2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 LYS A 152 CE NZ REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 LYS A 187 CE NZ REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 LYS A 193 CD CE NZ REMARK 470 LYS A 207 CD CE NZ REMARK 470 LYS A 212 CD CE NZ REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 GLU A 248 CD OE1 OE2 REMARK 470 LYS A 261 NZ REMARK 470 ARG A 278 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 282 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 LYS A 308 CE NZ REMARK 470 LYS A 333 NZ REMARK 470 GLU A 336 CD OE1 OE2 REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 ARG A 342 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 343 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 344 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 -167.93 -163.29 REMARK 500 THR A 139 -85.47 -138.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 424 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 52 O REMARK 620 2 LEU A 53 O 79.0 REMARK 620 3 MET A 55 O 85.6 89.5 REMARK 620 4 ASN A 57 OD1 84.0 162.2 84.0 REMARK 620 5 HOH A 480 O 174.1 100.1 88.6 96.2 REMARK 620 6 HOH A 481 O 100.1 89.0 173.7 99.2 85.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5ID A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 424 DBREF 3UWP A 1 420 UNP Q8TEK3 DOT1L_HUMAN 1 420 SEQADV 3UWP MET A -17 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP HIS A -16 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP HIS A -15 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP HIS A -14 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP HIS A -13 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP HIS A -12 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP HIS A -11 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP SER A -10 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP SER A -9 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP GLY A -8 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP ARG A -7 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP GLU A -6 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP ASN A -5 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP LEU A -4 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP TYR A -3 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP PHE A -2 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP GLN A -1 UNP Q8TEK3 EXPRESSION TAG SEQADV 3UWP GLY A 0 UNP Q8TEK3 EXPRESSION TAG SEQRES 1 A 438 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 438 LEU TYR PHE GLN GLY MET GLY GLU LYS LEU GLU LEU ARG SEQRES 3 A 438 LEU LYS SER PRO VAL GLY ALA GLU PRO ALA VAL TYR PRO SEQRES 4 A 438 TRP PRO LEU PRO VAL TYR ASP LYS HIS HIS ASP ALA ALA SEQRES 5 A 438 HIS GLU ILE ILE GLU THR ILE ARG TRP VAL CYS GLU GLU SEQRES 6 A 438 ILE PRO ASP LEU LYS LEU ALA MET GLU ASN TYR VAL LEU SEQRES 7 A 438 ILE ASP TYR ASP THR LYS SER PHE GLU SER MET GLN ARG SEQRES 8 A 438 LEU CYS ASP LYS TYR ASN ARG ALA ILE ASP SER ILE HIS SEQRES 9 A 438 GLN LEU TRP LYS GLY THR THR GLN PRO MET LYS LEU ASN SEQRES 10 A 438 THR ARG PRO SER THR GLY LEU LEU ARG HIS ILE LEU GLN SEQRES 11 A 438 GLN VAL TYR ASN HIS SER VAL THR ASP PRO GLU LYS LEU SEQRES 12 A 438 ASN ASN TYR GLU PRO PHE SER PRO GLU VAL TYR GLY GLU SEQRES 13 A 438 THR SER PHE ASP LEU VAL ALA GLN MET ILE ASP GLU ILE SEQRES 14 A 438 LYS MET THR ASP ASP ASP LEU PHE VAL ASP LEU GLY SER SEQRES 15 A 438 GLY VAL GLY GLN VAL VAL LEU GLN VAL ALA ALA ALA THR SEQRES 16 A 438 ASN CYS LYS HIS HIS TYR GLY VAL GLU LYS ALA ASP ILE SEQRES 17 A 438 PRO ALA LYS TYR ALA GLU THR MET ASP ARG GLU PHE ARG SEQRES 18 A 438 LYS TRP MET LYS TRP TYR GLY LYS LYS HIS ALA GLU TYR SEQRES 19 A 438 THR LEU GLU ARG GLY ASP PHE LEU SER GLU GLU TRP ARG SEQRES 20 A 438 GLU ARG ILE ALA ASN THR SER VAL ILE PHE VAL ASN ASN SEQRES 21 A 438 PHE ALA PHE GLY PRO GLU VAL ASP HIS GLN LEU LYS GLU SEQRES 22 A 438 ARG PHE ALA ASN MET LYS GLU GLY GLY ARG ILE VAL SER SEQRES 23 A 438 SER LYS PRO PHE ALA PRO LEU ASN PHE ARG ILE ASN SER SEQRES 24 A 438 ARG ASN LEU SER ASP ILE GLY THR ILE MET ARG VAL VAL SEQRES 25 A 438 GLU LEU SER PRO LEU LYS GLY SER VAL SER TRP THR GLY SEQRES 26 A 438 LYS PRO VAL SER TYR TYR LEU HIS THR ILE ASP ARG THR SEQRES 27 A 438 ILE LEU GLU ASN TYR PHE SER SER LEU LYS ASN PRO LYS SEQRES 28 A 438 LEU ARG GLU GLU GLN GLU ALA ALA ARG ARG ARG GLN GLN SEQRES 29 A 438 ARG GLU SER LYS SER ASN ALA ALA THR PRO THR LYS GLY SEQRES 30 A 438 PRO GLU GLY LYS VAL ALA GLY PRO ALA ASP ALA PRO MET SEQRES 31 A 438 ASP SER GLY ALA GLU GLU GLU LYS ALA GLY ALA ALA THR SEQRES 32 A 438 VAL LYS LYS PRO SER PRO SER LYS ALA ARG LYS LYS LYS SEQRES 33 A 438 LEU ASN LYS LYS GLY ARG LYS MET ALA GLY ARG LYS ARG SEQRES 34 A 438 GLY ARG PRO LYS LYS MET ASN THR ALA HET 5ID A 421 20 HET IOD A 422 1 HET IOD A 423 1 HET NA A 424 1 HET UNX A 425 1 HET UNX A 426 1 HET UNX A 427 1 HET UNX A 428 1 HET UNX A 429 1 HET UNX A 430 1 HETNAM 5ID (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3- HETNAM 2 5ID D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3, HETNAM 3 5ID 4-DIOL HETNAM IOD IODIDE ION HETNAM NA SODIUM ION HETNAM UNX UNKNOWN ATOM OR ION HETSYN 5ID 5-IODOTUBERCIDIN FORMUL 2 5ID C11 H13 I N4 O4 FORMUL 3 IOD 2(I 1-) FORMUL 5 NA NA 1+ FORMUL 6 UNX 6(X) FORMUL 12 HOH *66(H2 O) HELIX 1 1 ALA A 33 ILE A 48 1 16 HELIX 2 2 ILE A 48 MET A 55 1 8 HELIX 3 3 GLU A 56 TYR A 63 5 8 HELIX 4 4 SER A 67 GLY A 91 1 25 HELIX 5 5 SER A 103 VAL A 119 1 17 HELIX 6 6 ASP A 121 LEU A 125 5 5 HELIX 7 7 SER A 132 GLU A 138 5 7 HELIX 8 8 THR A 139 LYS A 152 1 14 HELIX 9 9 GLY A 167 THR A 177 1 11 HELIX 10 10 ALA A 188 GLY A 210 1 23 HELIX 11 11 SER A 225 ASN A 234 1 10 HELIX 12 12 GLY A 246 ALA A 258 1 13 HELIX 13 13 ASP A 286 THR A 289 5 4 HELIX 14 14 ARG A 319 ASN A 331 1 13 HELIX 15 15 ASN A 331 ARG A 343 1 13 SHEET 1 A 2 GLU A 6 LEU A 9 0 SHEET 2 A 2 ALA A 18 PRO A 21 -1 O TYR A 20 N LEU A 7 SHEET 1 B 2 VAL A 26 ASP A 28 0 SHEET 2 B 2 HIS A 31 ASP A 32 -1 O HIS A 31 N TYR A 27 SHEET 1 C 7 GLU A 215 ARG A 220 0 SHEET 2 C 7 HIS A 181 GLU A 186 1 N GLY A 184 O GLU A 219 SHEET 3 C 7 LEU A 158 LEU A 162 1 N ASP A 161 O TYR A 183 SHEET 4 C 7 VAL A 237 VAL A 240 1 O PHE A 239 N VAL A 160 SHEET 5 C 7 ARG A 265 SER A 268 1 O VAL A 267 N ILE A 238 SHEET 6 C 7 TYR A 313 ILE A 317 -1 O HIS A 315 N ILE A 266 SHEET 7 C 7 MET A 291 GLU A 295 -1 N VAL A 294 O LEU A 314 LINK O LYS A 52 NA NA A 424 1555 1555 2.57 LINK O LEU A 53 NA NA A 424 1555 1555 2.74 LINK O MET A 55 NA NA A 424 1555 1555 2.33 LINK OD1 ASN A 57 NA NA A 424 1555 1555 2.35 LINK NA NA A 424 O HOH A 480 1555 1555 2.37 LINK NA NA A 424 O HOH A 481 1555 1555 2.34 CISPEP 1 TRP A 22 PRO A 23 0 -0.12 SITE 1 AC1 10 TYR A 58 GLU A 129 GLY A 163 GLU A 186 SITE 2 AC1 10 LYS A 187 GLY A 221 ASP A 222 PHE A 223 SITE 3 AC1 10 ASN A 241 IOD A 422 SITE 1 AC2 1 5ID A 421 SITE 1 AC3 2 GLY A 246 VAL A 249 SITE 1 AC4 6 LYS A 52 LEU A 53 MET A 55 ASN A 57 SITE 2 AC4 6 HOH A 480 HOH A 481 CRYST1 149.784 149.784 53.521 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006676 0.003855 0.000000 0.00000 SCALE2 0.000000 0.007709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018684 0.00000