HEADER OXIDOREDUCTASE/INHIBITOR 05-DEC-11 3UXH TITLE DESIGN, SYNTHESIS AND BIOLOGICAL EVALUATION OF POTETENT QUINOLINE AND TITLE 2 PYRROLOQUINOLINE AMMOSAMIDE ANALOGUES AS INHIBITORS OF QUINONE TITLE 3 REDUCTASE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSYLDIHYDRONICOTINAMIDE DEHYDROGENASE [QUINONE]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NRH DEHYDROGENASE [QUINONE] 2, NRH:QUINONE OXIDOREDUCTASE 2, COMPND 5 QUINONE REDUCTASE 2, QR2; COMPND 6 EC: 1.10.99.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NQO2, NMOR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS QUINONE REDUCTASE, CYTOSOL, OXIDOREDUCTASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.CUSHMAN,A.D.MESECAR,P.E.FANWICK,R.NARASIMHA,K.C.JENSEN REVDAT 4 21-DEC-22 3UXH 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3UXH 1 REMARK REVDAT 2 25-JAN-12 3UXH 1 JRNL REVDAT 1 18-JAN-12 3UXH 0 JRNL AUTH P.V.REDDY,K.C.JENSEN,A.D.MESECAR,P.E.FANWICK,M.CUSHMAN JRNL TITL DESIGN, SYNTHESIS, AND BIOLOGICAL EVALUATION OF POTENT JRNL TITL 2 QUINOLINE AND PYRROLOQUINOLINE AMMOSAMIDE ANALOGUES AS JRNL TITL 3 INHIBITORS OF QUINONE REDUCTASE 2. JRNL REF J.MED.CHEM. V. 55 367 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22206487 JRNL DOI 10.1021/JM201251C REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 74964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3780 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4311 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 148 REMARK 3 SOLVENT ATOMS : 379 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : -1.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.514 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3926 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5364 ; 2.429 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 464 ; 6.710 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;36.621 ;24.220 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 619 ;13.049 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.999 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 563 ; 0.165 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2996 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2295 ; 1.332 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3700 ; 2.122 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1631 ; 3.021 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1661 ; 4.644 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 230 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6463 -8.3865 -4.3070 REMARK 3 T TENSOR REMARK 3 T11: 0.0577 T22: 0.0024 REMARK 3 T33: 0.0261 T12: -0.0004 REMARK 3 T13: -0.0257 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.8653 L22: 0.9366 REMARK 3 L33: 2.6060 L12: 0.0006 REMARK 3 L13: 0.0450 L23: 0.1367 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: -0.0261 S13: -0.0797 REMARK 3 S21: 0.0808 S22: 0.0088 S23: -0.0152 REMARK 3 S31: 0.2982 S32: -0.0205 S33: -0.0449 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 230 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3939 -7.5497 -26.9089 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: 0.0116 REMARK 3 T33: 0.0125 T12: -0.0084 REMARK 3 T13: -0.0123 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.8043 L22: 1.0894 REMARK 3 L33: 1.9401 L12: -0.0229 REMARK 3 L13: -0.0802 L23: 0.1483 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: 0.0656 S13: -0.0433 REMARK 3 S21: -0.0665 S22: 0.0353 S23: 0.0129 REMARK 3 S31: 0.1290 S32: -0.0171 S33: -0.0433 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3UXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74964 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 66.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M AMMONIUM SULFATE, 0.1M BISTRIS, REMARK 280 0.1M NACL, 5MM DTT, 12UM FAD, PH 6.7, VAPOR DIFFUSION, HANGING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.22750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.33150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.03200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.33150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.22750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.03200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 562 O HOH B 550 2.07 REMARK 500 O1A FAD A 302 O HOH A 566 2.09 REMARK 500 OD1 ASN B 45 O HOH B 596 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 193 CD GLU A 193 OE1 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 27 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 PHE A 65 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 TYR A 104 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 LEU A 143 CB - CG - CD1 ANGL. DEV. = -12.0 DEGREES REMARK 500 LEU A 184 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG B 49 CG - CD - NE ANGL. DEV. = 13.0 DEGREES REMARK 500 ARG B 49 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ASP B 52 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG B 78 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG B 78 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG B 118 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP B 127 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP B 127 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 61 88.55 -152.80 REMARK 500 TYR A 132 -120.67 45.12 REMARK 500 TYR A 155 47.83 -93.81 REMARK 500 THR A 175 -63.64 -109.10 REMARK 500 GLU A 198 -170.91 -62.87 REMARK 500 GLU A 199 -63.86 59.95 REMARK 500 PHE B 124 -60.45 -92.60 REMARK 500 TYR B 132 -124.87 47.63 REMARK 500 TYR B 155 54.16 -93.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 1 GLY A 2 -38.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 173 ND1 REMARK 620 2 HIS A 177 ND1 108.1 REMARK 620 3 CYS A 222 O 106.5 98.7 REMARK 620 4 CYS A 222 SG 124.7 115.0 99.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 173 ND1 REMARK 620 2 HIS B 177 ND1 106.2 REMARK 620 3 CYS B 222 O 107.4 101.0 REMARK 620 4 CYS B 222 SG 125.6 115.6 97.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UXH A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UXH B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UXE RELATED DB: PDB DBREF 3UXH A 1 230 UNP P16083 NQO2_HUMAN 2 231 DBREF 3UXH B 1 230 UNP P16083 NQO2_HUMAN 2 231 SEQADV 3UXH PHE A 46 UNP P16083 LEU 47 VARIANT SEQADV 3UXH PHE B 46 UNP P16083 LEU 47 VARIANT SEQRES 1 A 230 ALA GLY LYS LYS VAL LEU ILE VAL TYR ALA HIS GLN GLU SEQRES 2 A 230 PRO LYS SER PHE ASN GLY SER LEU LYS ASN VAL ALA VAL SEQRES 3 A 230 ASP GLU LEU SER ARG GLN GLY CYS THR VAL THR VAL SER SEQRES 4 A 230 ASP LEU TYR ALA MET ASN PHE GLU PRO ARG ALA THR ASP SEQRES 5 A 230 LYS ASP ILE THR GLY THR LEU SER ASN PRO GLU VAL PHE SEQRES 6 A 230 ASN TYR GLY VAL GLU THR HIS GLU ALA TYR LYS GLN ARG SEQRES 7 A 230 SER LEU ALA SER ASP ILE THR ASP GLU GLN LYS LYS VAL SEQRES 8 A 230 ARG GLU ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU TYR SEQRES 9 A 230 TRP PHE SER VAL PRO ALA ILE LEU LYS GLY TRP MET ASP SEQRES 10 A 230 ARG VAL LEU CYS GLN GLY PHE ALA PHE ASP ILE PRO GLY SEQRES 11 A 230 PHE TYR ASP SER GLY LEU LEU GLN GLY LYS LEU ALA LEU SEQRES 12 A 230 LEU SER VAL THR THR GLY GLY THR ALA GLU MET TYR THR SEQRES 13 A 230 LYS THR GLY VAL ASN GLY ASP SER ARG TYR PHE LEU TRP SEQRES 14 A 230 PRO LEU GLN HIS GLY THR LEU HIS PHE CYS GLY PHE LYS SEQRES 15 A 230 VAL LEU ALA PRO GLN ILE SER PHE ALA PRO GLU ILE ALA SEQRES 16 A 230 SER GLU GLU GLU ARG LYS GLY MET VAL ALA ALA TRP SER SEQRES 17 A 230 GLN ARG LEU GLN THR ILE TRP LYS GLU GLU PRO ILE PRO SEQRES 18 A 230 CYS THR ALA HIS TRP HIS PHE GLY GLN SEQRES 1 B 230 ALA GLY LYS LYS VAL LEU ILE VAL TYR ALA HIS GLN GLU SEQRES 2 B 230 PRO LYS SER PHE ASN GLY SER LEU LYS ASN VAL ALA VAL SEQRES 3 B 230 ASP GLU LEU SER ARG GLN GLY CYS THR VAL THR VAL SER SEQRES 4 B 230 ASP LEU TYR ALA MET ASN PHE GLU PRO ARG ALA THR ASP SEQRES 5 B 230 LYS ASP ILE THR GLY THR LEU SER ASN PRO GLU VAL PHE SEQRES 6 B 230 ASN TYR GLY VAL GLU THR HIS GLU ALA TYR LYS GLN ARG SEQRES 7 B 230 SER LEU ALA SER ASP ILE THR ASP GLU GLN LYS LYS VAL SEQRES 8 B 230 ARG GLU ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU TYR SEQRES 9 B 230 TRP PHE SER VAL PRO ALA ILE LEU LYS GLY TRP MET ASP SEQRES 10 B 230 ARG VAL LEU CYS GLN GLY PHE ALA PHE ASP ILE PRO GLY SEQRES 11 B 230 PHE TYR ASP SER GLY LEU LEU GLN GLY LYS LEU ALA LEU SEQRES 12 B 230 LEU SER VAL THR THR GLY GLY THR ALA GLU MET TYR THR SEQRES 13 B 230 LYS THR GLY VAL ASN GLY ASP SER ARG TYR PHE LEU TRP SEQRES 14 B 230 PRO LEU GLN HIS GLY THR LEU HIS PHE CYS GLY PHE LYS SEQRES 15 B 230 VAL LEU ALA PRO GLN ILE SER PHE ALA PRO GLU ILE ALA SEQRES 16 B 230 SER GLU GLU GLU ARG LYS GLY MET VAL ALA ALA TRP SER SEQRES 17 B 230 GLN ARG LEU GLN THR ILE TRP LYS GLU GLU PRO ILE PRO SEQRES 18 B 230 CYS THR ALA HIS TRP HIS PHE GLY GLN HET ZN A 301 1 HET FAD A 302 53 HET UXH A 303 20 HET ZN B 301 1 HET UXH B 302 20 HET FAD B 303 53 HETNAM ZN ZINC ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM UXH 6,8-DIAMINO-7-CHLORO-1-METHYL-2-OXO-1,2- HETNAM 2 UXH DIHYDROPYRROLO[4,3,2-DE]QUINOLINE-4-CARBOXAMIDE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 UXH 2(C12 H10 CL N5 O2) FORMUL 9 HOH *379(H2 O) HELIX 1 1 SER A 16 GLY A 33 1 18 HELIX 2 2 THR A 51 ILE A 55 5 5 HELIX 3 3 ASN A 66 GLN A 77 1 12 HELIX 4 4 ALA A 81 ALA A 94 1 14 HELIX 5 5 PRO A 109 LEU A 120 1 12 HELIX 6 6 PHE A 131 GLY A 135 5 5 HELIX 7 7 ASP A 163 HIS A 173 1 11 HELIX 8 8 PRO A 192 ALA A 195 5 4 HELIX 9 9 SER A 196 THR A 213 1 18 HELIX 10 10 ILE A 214 GLU A 217 5 4 HELIX 11 11 THR A 223 GLY A 229 1 7 HELIX 12 12 SER B 16 GLN B 32 1 17 HELIX 13 13 THR B 51 ILE B 55 5 5 HELIX 14 14 ASN B 66 ARG B 78 1 13 HELIX 15 15 ALA B 81 ALA B 94 1 14 HELIX 16 16 PRO B 109 LEU B 120 1 12 HELIX 17 17 PHE B 131 GLY B 135 5 5 HELIX 18 18 ASP B 163 HIS B 173 1 11 HELIX 19 19 SER B 196 THR B 213 1 18 HELIX 20 20 ILE B 214 GLU B 217 5 4 HELIX 21 21 THR B 223 GLY B 229 1 7 SHEET 1 A 5 THR A 35 ASP A 40 0 SHEET 2 A 5 LYS A 4 TYR A 9 1 N VAL A 5 O THR A 35 SHEET 3 A 5 LEU A 96 PRO A 102 1 O ILE A 98 N VAL A 8 SHEET 4 A 5 LEU A 141 THR A 148 1 O SER A 145 N PHE A 99 SHEET 5 A 5 LYS A 182 VAL A 183 1 O LYS A 182 N ALA A 142 SHEET 1 B 5 THR A 35 ASP A 40 0 SHEET 2 B 5 LYS A 4 TYR A 9 1 N VAL A 5 O THR A 35 SHEET 3 B 5 LEU A 96 PRO A 102 1 O ILE A 98 N VAL A 8 SHEET 4 B 5 LEU A 141 THR A 148 1 O SER A 145 N PHE A 99 SHEET 5 B 5 GLN A 187 PHE A 190 1 O GLN A 187 N LEU A 144 SHEET 1 C 5 THR B 35 ASP B 40 0 SHEET 2 C 5 LYS B 4 TYR B 9 1 N VAL B 5 O THR B 35 SHEET 3 C 5 LEU B 96 PRO B 102 1 O ILE B 98 N VAL B 8 SHEET 4 C 5 LEU B 141 THR B 148 1 O SER B 145 N PHE B 99 SHEET 5 C 5 LYS B 182 VAL B 183 1 O LYS B 182 N ALA B 142 SHEET 1 D 5 THR B 35 ASP B 40 0 SHEET 2 D 5 LYS B 4 TYR B 9 1 N VAL B 5 O THR B 35 SHEET 3 D 5 LEU B 96 PRO B 102 1 O ILE B 98 N VAL B 8 SHEET 4 D 5 LEU B 141 THR B 148 1 O SER B 145 N PHE B 99 SHEET 5 D 5 GLN B 187 PHE B 190 1 O SER B 189 N VAL B 146 LINK ND1 HIS A 173 ZN ZN A 301 1555 1555 2.03 LINK ND1 HIS A 177 ZN ZN A 301 1555 1555 2.16 LINK O CYS A 222 ZN ZN A 301 1555 1555 2.05 LINK SG CYS A 222 ZN ZN A 301 1555 1555 2.25 LINK ND1 HIS B 173 ZN ZN B 301 1555 1555 2.09 LINK ND1 HIS B 177 ZN ZN B 301 1555 1555 2.15 LINK O CYS B 222 ZN ZN B 301 1555 1555 2.06 LINK SG CYS B 222 ZN ZN B 301 1555 1555 2.29 CISPEP 1 ILE A 128 PRO A 129 0 -7.68 CISPEP 2 ALA B 1 GLY B 2 0 10.36 CISPEP 3 ILE B 128 PRO B 129 0 -4.56 SITE 1 AC1 3 HIS A 173 HIS A 177 CYS A 222 SITE 1 AC2 32 HIS A 11 LYS A 15 SER A 16 PHE A 17 SITE 2 AC2 32 ASN A 18 SER A 20 PRO A 102 LEU A 103 SITE 3 AC2 32 TYR A 104 TRP A 105 PHE A 106 THR A 147 SITE 4 AC2 32 THR A 148 GLY A 149 GLY A 150 TYR A 155 SITE 5 AC2 32 GLU A 193 GLU A 197 ARG A 200 LYS A 201 SITE 6 AC2 32 UXH A 303 HOH A 477 HOH A 478 HOH A 479 SITE 7 AC2 32 HOH A 493 HOH A 528 HOH A 561 HOH A 566 SITE 8 AC2 32 ASN B 66 ASP B 117 HOH B 408 HOH B 458 SITE 1 AC3 11 TRP A 105 GLY A 149 GLY A 150 MET A 154 SITE 2 AC3 11 ASN A 161 FAD A 302 PHE B 126 ILE B 128 SITE 3 AC3 11 PHE B 178 HOH B 406 HOH B 408 SITE 1 AC4 3 HIS B 173 HIS B 177 CYS B 222 SITE 1 AC5 10 PHE A 126 PHE A 178 HOH A 406 HOH A 407 SITE 2 AC5 10 TRP B 105 GLY B 149 GLY B 150 MET B 154 SITE 3 AC5 10 ASN B 161 FAD B 303 SITE 1 AC6 29 ASN A 66 ASP A 117 HOH A 407 HIS B 11 SITE 2 AC6 29 LYS B 15 SER B 16 PHE B 17 ASN B 18 SITE 3 AC6 29 SER B 20 PRO B 102 LEU B 103 TYR B 104 SITE 4 AC6 29 TRP B 105 PHE B 106 THR B 147 THR B 148 SITE 5 AC6 29 GLY B 149 GLY B 150 TYR B 155 GLU B 193 SITE 6 AC6 29 GLU B 197 ARG B 200 LYS B 201 UXH B 302 SITE 7 AC6 29 HOH B 454 HOH B 473 HOH B 483 HOH B 497 SITE 8 AC6 29 HOH B 501 CRYST1 56.455 84.064 106.663 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009375 0.00000