HEADER OXIDOREDUCTASE 06-DEC-11 3UYJ TITLE CRYSTAL STRUCTURE OF JMJD5 CATALYTIC CORE DOMAIN IN COMPLEX WITH TITLE 2 NICKLE AND ALPHA-KG COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 8; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC CORE DOMAIN, UNP RESIDUES 173-416; COMPND 5 SYNONYM: JMJC-CONTAINING DEMETHYLASE, JMJC DOMAIN-CONTAINING PROTEIN COMPND 6 5, JUMONJI DOMAIN-CONTAINING PROTEIN 5; COMPND 7 EC: 1.14.11.27; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JMJD5, KDM8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS JELLYROLL-LIKE ALL BETA FOLD, DEMETHYLASE, NUCLEAR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.SU,H.LI REVDAT 1 21-DEC-11 3UYJ 0 JRNL AUTH X.SU,H.LI JRNL TITL CRYSTAL STRUCTURE OF JMJD5 CATALYTIC CORE DOMAIN IN COMPLEX JRNL TITL 2 WITH NICKLE AND ALPHA-KG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 30809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9947 - 5.0396 0.98 3104 167 0.2086 0.2479 REMARK 3 2 5.0396 - 4.0106 0.96 2895 158 0.1630 0.2197 REMARK 3 3 4.0106 - 3.5068 0.96 2868 160 0.1984 0.2328 REMARK 3 4 3.5068 - 3.1875 1.00 2944 156 0.2081 0.2400 REMARK 3 5 3.1875 - 2.9599 1.00 2928 138 0.2205 0.2758 REMARK 3 6 2.9599 - 2.7858 1.00 2969 144 0.2178 0.3038 REMARK 3 7 2.7858 - 2.6466 1.00 2879 169 0.2197 0.2634 REMARK 3 8 2.6466 - 2.5317 1.00 2864 171 0.2263 0.3111 REMARK 3 9 2.5317 - 2.4344 1.00 2906 144 0.2378 0.3204 REMARK 3 10 2.4344 - 2.3505 1.00 2888 157 0.2338 0.3172 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 60.60 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.42710 REMARK 3 B22 (A**2) : 6.42710 REMARK 3 B33 (A**2) : -12.85430 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3989 REMARK 3 ANGLE : 1.058 5446 REMARK 3 CHIRALITY : 0.078 567 REMARK 3 PLANARITY : 0.006 706 REMARK 3 DIHEDRAL : 16.611 1480 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-11. REMARK 100 THE RCSB ID CODE IS RCSB069369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30809 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG3350, 0.1M HEPESNA PH 7.5, REMARK 280 EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 177.79067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.89533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.89533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 177.79067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 MET A 172 REMARK 465 ASP A 353 REMARK 465 THR A 354 REMARK 465 HIS A 355 REMARK 465 LEU A 356 REMARK 465 LEU A 357 REMARK 465 HIS A 358 REMARK 465 GLY B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 MET B 172 REMARK 465 GLY B 173 REMARK 465 LEU B 174 REMARK 465 ILE B 175 REMARK 465 PRO B 176 REMARK 465 ASP B 177 REMARK 465 VAL B 178 REMARK 465 LYS B 179 REMARK 465 LEU B 180 REMARK 465 ASP B 353 REMARK 465 THR B 354 REMARK 465 HIS B 355 REMARK 465 LEU B 356 REMARK 465 LEU B 357 REMARK 465 HIS B 358 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 189 55.51 38.99 REMARK 500 PHE A 199 -50.60 -132.79 REMARK 500 ARG A 242 42.20 -90.16 REMARK 500 ASN A 265 -131.61 54.32 REMARK 500 ARG B 189 53.69 36.95 REMARK 500 PHE B 199 -44.33 -137.99 REMARK 500 ARG B 242 36.19 -87.06 REMARK 500 VAL B 264 -63.61 -102.58 REMARK 500 TYR B 350 61.59 36.43 REMARK 500 PRO B 351 177.19 -59.84 REMARK 500 LYS B 397 -8.32 66.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 266 PRO B 267 -147.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 323 OD2 REMARK 620 2 AKG A 601 O1 83.7 REMARK 620 3 HIS A 321 NE2 110.6 165.7 REMARK 620 4 AKG A 601 O5 167.6 84.0 81.6 REMARK 620 5 HIS A 400 NE2 82.7 97.1 83.7 96.7 REMARK 620 6 HOH A 5 O 88.6 94.7 87.4 94.5 164.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 321 NE2 REMARK 620 2 ASP B 323 OD2 113.5 REMARK 620 3 AKG B 601 O5 84.8 161.5 REMARK 620 4 AKG B 601 O1 164.1 81.6 80.5 REMARK 620 5 HIS B 400 NE2 83.6 84.2 95.7 103.6 REMARK 620 6 HOH B 19 O 81.8 95.2 89.9 92.2 163.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG B 601 DBREF 3UYJ A 173 416 UNP Q8N371 KDM8_HUMAN 173 416 DBREF 3UYJ B 173 416 UNP Q8N371 KDM8_HUMAN 173 416 SEQADV 3UYJ GLY A 169 UNP Q8N371 EXPRESSION TAG SEQADV 3UYJ SER A 170 UNP Q8N371 EXPRESSION TAG SEQADV 3UYJ HIS A 171 UNP Q8N371 EXPRESSION TAG SEQADV 3UYJ MET A 172 UNP Q8N371 EXPRESSION TAG SEQADV 3UYJ GLY B 169 UNP Q8N371 EXPRESSION TAG SEQADV 3UYJ SER B 170 UNP Q8N371 EXPRESSION TAG SEQADV 3UYJ HIS B 171 UNP Q8N371 EXPRESSION TAG SEQADV 3UYJ MET B 172 UNP Q8N371 EXPRESSION TAG SEQRES 1 A 248 GLY SER HIS MET GLY LEU ILE PRO ASP VAL LYS LEU GLU SEQRES 2 A 248 LYS THR VAL PRO ARG LEU HIS ARG PRO SER LEU GLN HIS SEQRES 3 A 248 PHE ARG GLU GLN PHE LEU VAL PRO GLY ARG PRO VAL ILE SEQRES 4 A 248 LEU LYS GLY VAL ALA ASP HIS TRP PRO CYS MET GLN LYS SEQRES 5 A 248 TRP SER LEU GLU TYR ILE GLN GLU ILE ALA GLY CYS ARG SEQRES 6 A 248 THR VAL PRO VAL GLU VAL GLY SER ARG TYR THR ASP GLU SEQRES 7 A 248 GLU TRP SER GLN THR LEU MET THR VAL ASN GLU PHE ILE SEQRES 8 A 248 SER LYS TYR ILE VAL ASN GLU PRO ARG ASP VAL GLY TYR SEQRES 9 A 248 LEU ALA GLN HIS GLN LEU PHE ASP GLN ILE PRO GLU LEU SEQRES 10 A 248 LYS GLN ASP ILE SER ILE PRO ASP TYR CYS SER LEU GLY SEQRES 11 A 248 ASP GLY GLU GLU GLU GLU ILE THR ILE ASN ALA TRP PHE SEQRES 12 A 248 GLY PRO GLN GLY THR ILE SER PRO LEU HIS GLN ASP PRO SEQRES 13 A 248 GLN GLN ASN PHE LEU VAL GLN VAL MET GLY ARG LYS TYR SEQRES 14 A 248 ILE ARG LEU TYR SER PRO GLN GLU SER GLY ALA LEU TYR SEQRES 15 A 248 PRO HIS ASP THR HIS LEU LEU HIS ASN THR SER GLN VAL SEQRES 16 A 248 ASP VAL GLU ASN PRO ASP LEU GLU LYS PHE PRO LYS PHE SEQRES 17 A 248 ALA LYS ALA PRO PHE LEU SER CYS ILE LEU SER PRO GLY SEQRES 18 A 248 GLU ILE LEU PHE ILE PRO VAL LYS TYR TRP HIS TYR VAL SEQRES 19 A 248 ARG ALA LEU ASP LEU SER PHE SER VAL SER PHE TRP TRP SEQRES 20 A 248 SER SEQRES 1 B 248 GLY SER HIS MET GLY LEU ILE PRO ASP VAL LYS LEU GLU SEQRES 2 B 248 LYS THR VAL PRO ARG LEU HIS ARG PRO SER LEU GLN HIS SEQRES 3 B 248 PHE ARG GLU GLN PHE LEU VAL PRO GLY ARG PRO VAL ILE SEQRES 4 B 248 LEU LYS GLY VAL ALA ASP HIS TRP PRO CYS MET GLN LYS SEQRES 5 B 248 TRP SER LEU GLU TYR ILE GLN GLU ILE ALA GLY CYS ARG SEQRES 6 B 248 THR VAL PRO VAL GLU VAL GLY SER ARG TYR THR ASP GLU SEQRES 7 B 248 GLU TRP SER GLN THR LEU MET THR VAL ASN GLU PHE ILE SEQRES 8 B 248 SER LYS TYR ILE VAL ASN GLU PRO ARG ASP VAL GLY TYR SEQRES 9 B 248 LEU ALA GLN HIS GLN LEU PHE ASP GLN ILE PRO GLU LEU SEQRES 10 B 248 LYS GLN ASP ILE SER ILE PRO ASP TYR CYS SER LEU GLY SEQRES 11 B 248 ASP GLY GLU GLU GLU GLU ILE THR ILE ASN ALA TRP PHE SEQRES 12 B 248 GLY PRO GLN GLY THR ILE SER PRO LEU HIS GLN ASP PRO SEQRES 13 B 248 GLN GLN ASN PHE LEU VAL GLN VAL MET GLY ARG LYS TYR SEQRES 14 B 248 ILE ARG LEU TYR SER PRO GLN GLU SER GLY ALA LEU TYR SEQRES 15 B 248 PRO HIS ASP THR HIS LEU LEU HIS ASN THR SER GLN VAL SEQRES 16 B 248 ASP VAL GLU ASN PRO ASP LEU GLU LYS PHE PRO LYS PHE SEQRES 17 B 248 ALA LYS ALA PRO PHE LEU SER CYS ILE LEU SER PRO GLY SEQRES 18 B 248 GLU ILE LEU PHE ILE PRO VAL LYS TYR TRP HIS TYR VAL SEQRES 19 B 248 ARG ALA LEU ASP LEU SER PHE SER VAL SER PHE TRP TRP SEQRES 20 B 248 SER HET NI A 501 1 HET AKG A 601 14 HET NI B 501 1 HET AKG B 601 14 HETNAM NI NICKEL (II) ION HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 3 NI 2(NI 2+) FORMUL 4 AKG 2(C5 H6 O5) FORMUL 7 HOH *209(H2 O) HELIX 1 1 ASP A 177 GLU A 181 5 5 HELIX 2 2 SER A 191 PHE A 199 1 9 HELIX 3 3 TRP A 215 TRP A 221 1 7 HELIX 4 4 SER A 222 GLY A 231 1 10 HELIX 5 5 THR A 244 TRP A 248 5 5 HELIX 6 6 VAL A 255 ILE A 263 1 9 HELIX 7 7 GLN A 277 ILE A 282 1 6 HELIX 8 8 PRO A 283 ILE A 289 5 7 HELIX 9 9 PRO A 292 GLY A 298 5 7 HELIX 10 10 GLU A 301 ILE A 305 5 5 HELIX 11 11 SER A 342 TYR A 350 5 9 HELIX 12 12 SER B 191 PHE B 199 1 9 HELIX 13 13 TRP B 215 TRP B 221 1 7 HELIX 14 14 SER B 222 GLY B 231 1 10 HELIX 15 15 THR B 244 GLU B 246 5 3 HELIX 16 16 VAL B 255 ILE B 263 1 9 HELIX 17 17 GLN B 277 ILE B 282 1 6 HELIX 18 18 ILE B 282 GLN B 287 1 6 HELIX 19 19 PRO B 292 GLY B 298 5 7 HELIX 20 20 GLU B 301 ILE B 305 5 5 HELIX 21 21 SER B 342 TYR B 350 5 9 HELIX 22 22 LYS B 375 ALA B 379 5 5 SHEET 1 A 7 ARG A 186 HIS A 188 0 SHEET 2 A 7 VAL A 206 LYS A 209 1 O LYS A 209 N LEU A 187 SHEET 3 A 7 ILE A 391 ILE A 394 -1 O PHE A 393 N VAL A 206 SHEET 4 A 7 GLN A 326 MET A 333 -1 N LEU A 329 O LEU A 392 SHEET 5 A 7 SER A 408 TRP A 415 -1 O VAL A 411 N VAL A 330 SHEET 6 A 7 THR A 306 GLY A 312 -1 N GLY A 312 O SER A 408 SHEET 7 A 7 LEU A 273 HIS A 276 -1 N HIS A 276 O ALA A 309 SHEET 1 B 2 THR A 234 VAL A 239 0 SHEET 2 B 2 SER A 249 THR A 254 -1 O MET A 253 N VAL A 235 SHEET 1 C 4 ILE A 317 HIS A 321 0 SHEET 2 C 4 TRP A 399 ALA A 404 -1 O VAL A 402 N SER A 318 SHEET 3 C 4 LYS A 336 TYR A 341 -1 N TYR A 337 O ARG A 403 SHEET 4 C 4 LEU A 382 LEU A 386 -1 O LEU A 382 N LEU A 340 SHEET 1 D 9 ARG B 186 HIS B 188 0 SHEET 2 D 9 VAL B 206 LYS B 209 1 O LYS B 209 N LEU B 187 SHEET 3 D 9 ILE B 391 ILE B 394 -1 O PHE B 393 N VAL B 206 SHEET 4 D 9 GLN B 326 MET B 333 -1 N LEU B 329 O LEU B 392 SHEET 5 D 9 SER B 408 TRP B 415 -1 O VAL B 411 N VAL B 330 SHEET 6 D 9 THR B 306 GLY B 312 -1 N GLY B 312 O SER B 408 SHEET 7 D 9 GLY B 271 HIS B 276 -1 N HIS B 276 O ALA B 309 SHEET 8 D 9 THR B 234 GLY B 240 -1 N GLU B 238 O TYR B 272 SHEET 9 D 9 TRP B 248 THR B 254 -1 O MET B 253 N VAL B 235 SHEET 1 E 4 ILE B 317 HIS B 321 0 SHEET 2 E 4 TRP B 399 ALA B 404 -1 O VAL B 402 N SER B 318 SHEET 3 E 4 LYS B 336 TYR B 341 -1 N TYR B 337 O ARG B 403 SHEET 4 E 4 LEU B 382 LEU B 386 -1 O LEU B 382 N LEU B 340 SSBOND 1 CYS A 232 CYS B 232 1555 1555 2.05 LINK OD2 ASP A 323 NI NI A 501 1555 1555 1.93 LINK NI NI A 501 O1 AKG A 601 1555 1555 1.94 LINK NE2 HIS A 321 NI NI A 501 1555 1555 2.01 LINK NE2 HIS B 321 NI NI B 501 1555 1555 2.02 LINK NI NI A 501 O5 AKG A 601 1555 1555 2.07 LINK OD2 ASP B 323 NI NI B 501 1555 1555 2.09 LINK NI NI B 501 O5 AKG B 601 1555 1555 2.09 LINK NI NI B 501 O1 AKG B 601 1555 1555 2.11 LINK NE2 HIS A 400 NI NI A 501 1555 1555 2.19 LINK NE2 HIS B 400 NI NI B 501 1555 1555 2.23 LINK NI NI B 501 O HOH B 19 1555 1555 2.30 LINK NI NI A 501 O HOH A 5 1555 1555 2.34 CISPEP 1 ASN B 265 GLU B 266 0 -17.05 SITE 1 AC1 5 HOH A 5 HIS A 321 ASP A 323 HIS A 400 SITE 2 AC1 5 AKG A 601 SITE 1 AC2 14 HOH A 58 HOH A 119 TYR A 272 TRP A 310 SITE 2 AC2 14 SER A 318 HIS A 321 ASP A 323 ASN A 327 SITE 3 AC2 14 LYS A 336 HIS A 400 VAL A 402 SER A 412 SITE 4 AC2 14 TRP A 414 NI A 501 SITE 1 AC3 5 HOH B 19 HIS B 321 ASP B 323 HIS B 400 SITE 2 AC3 5 AKG B 601 SITE 1 AC4 12 TYR B 272 TRP B 310 SER B 318 HIS B 321 SITE 2 AC4 12 ASP B 323 ASN B 327 LYS B 336 HIS B 400 SITE 3 AC4 12 VAL B 402 SER B 412 TRP B 414 NI B 501 CRYST1 68.393 68.393 266.686 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014621 0.008442 0.000000 0.00000 SCALE2 0.000000 0.016883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003750 0.00000