HEADER TRANSFERASE/RNA 07-DEC-11 3UZT TITLE STRUCTURE OF THE C13.18 RNA APTAMER IN COMPLEX WITH G PROTEIN-COUPLED TITLE 2 RECEPTOR KINASE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-ADRENERGIC RECEPTOR KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-ARK-1, G-PROTEIN-COUPLED RECEPTOR KINASE 2; COMPND 5 EC: 2.7.11.15; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: C13.18 RNA APTAMER; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: ADRBK1, GRK2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: SYNTHETIC RNA POLYMER, NO 5' OR 3' PHOSPHATES KEYWDS PROTEIN-RNA COMPLEX, PROTEIN KINASE FOLD, RGS HOMOLOGY DOMAIN, KEYWDS 2 PLECKSTRIN HOMOLOGY DOMAIN, G PROTEIN-COUPLED RECEPTOR KEYWDS 3 PHOSPHORYLATION, RNA APTAMER, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.J.G.TESMER,V.M.TESMER REVDAT 3 13-SEP-23 3UZT 1 REMARK SEQADV LINK REVDAT 2 29-AUG-12 3UZT 1 JRNL REVDAT 1 11-JUL-12 3UZT 0 JRNL AUTH V.M.TESMER,S.LENNARZ,G.MAYER,J.J.TESMER JRNL TITL MOLECULAR MECHANISM FOR INHIBITION OF G PROTEIN-COUPLED JRNL TITL 2 RECEPTOR KINASE 2 BY A SELECTIVE RNA APTAMER. JRNL REF STRUCTURE V. 20 1300 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22727813 JRNL DOI 10.1016/J.STR.2012.05.002 REMARK 2 REMARK 2 RESOLUTION. 3.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : -10000 REMARK 3 COMPLETENESS FOR RANGE (%) : 64.5 REMARK 3 NUMBER OF REFLECTIONS : 7811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 382 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 10.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.4140 REMARK 3 BIN FREE R VALUE SET COUNT : 5 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4809 REMARK 3 NUCLEIC ACID ATOMS : 125 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 129.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.671 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 107.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5054 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3593 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6815 ; 0.909 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8709 ; 0.759 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 581 ; 6.483 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;31.688 ;23.663 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 934 ;16.516 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;10.722 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 719 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5430 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1064 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 185 REMARK 3 RESIDUE RANGE : A 513 A 545 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3830 25.3580 11.9440 REMARK 3 T TENSOR REMARK 3 T11: 0.2506 T22: 0.2048 REMARK 3 T33: 0.2252 T12: 0.0456 REMARK 3 T13: 0.1111 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 2.3047 L22: 4.1078 REMARK 3 L33: 1.6541 L12: 2.2136 REMARK 3 L13: -0.9675 L23: -1.7797 REMARK 3 S TENSOR REMARK 3 S11: 0.1188 S12: 0.1315 S13: 0.1786 REMARK 3 S21: 0.1968 S22: -0.0434 S23: 0.6462 REMARK 3 S31: -0.1887 S32: -0.1969 S33: -0.0754 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 274 REMARK 3 RESIDUE RANGE : A 492 A 512 REMARK 3 RESIDUE RANGE : B 47 B 53 REMARK 3 ORIGIN FOR THE GROUP (A): 38.7380 25.6530 18.1590 REMARK 3 T TENSOR REMARK 3 T11: 0.3084 T22: 0.2947 REMARK 3 T33: 0.1513 T12: -0.0925 REMARK 3 T13: 0.1176 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 3.5428 L22: 4.2337 REMARK 3 L33: 1.6709 L12: -0.1843 REMARK 3 L13: 0.1580 L23: -0.1318 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: 0.1493 S13: 0.3881 REMARK 3 S21: -0.0452 S22: -0.1191 S23: -0.2965 REMARK 3 S31: -0.1602 S32: 0.4787 S33: 0.0192 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 475 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9850 2.2490 27.4020 REMARK 3 T TENSOR REMARK 3 T11: 0.3278 T22: 0.1914 REMARK 3 T33: 0.1928 T12: 0.0034 REMARK 3 T13: 0.0634 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 4.3695 L22: 2.7390 REMARK 3 L33: 1.0319 L12: -0.4704 REMARK 3 L13: 0.2854 L23: -1.5595 REMARK 3 S TENSOR REMARK 3 S11: 0.2132 S12: 0.0520 S13: -0.5384 REMARK 3 S21: 0.2127 S22: -0.1885 S23: 0.2072 REMARK 3 S31: 0.0628 S32: 0.1314 S33: -0.0248 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 552 A 656 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3380 44.8780 -11.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.7423 T22: 0.3501 REMARK 3 T33: 0.7065 T12: 0.1425 REMARK 3 T13: 0.3090 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 3.0915 L22: 3.0277 REMARK 3 L33: 5.8309 L12: 1.8345 REMARK 3 L13: -2.3194 L23: -4.0500 REMARK 3 S TENSOR REMARK 3 S11: 1.0285 S12: 0.4223 S13: -0.2105 REMARK 3 S21: 0.3603 S22: -0.2712 S23: 0.2047 REMARK 3 S31: -0.8124 S32: 0.4477 S33: -0.7572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8251 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 65.5 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 14.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: CHAIN A OF PDB ENTRY 1OMW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 5.9, 100 MM NACL AND 5% REMARK 280 PEG 3350 SUPPLEMENTED WITH 0.1 M GLYCINE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 56.67300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.85950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.67300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.85950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 ASP A 10 REMARK 465 VAL A 11 REMARK 465 SER A 12 REMARK 465 TYR A 13 REMARK 465 LEU A 14 REMARK 465 MET A 15 REMARK 465 ALA A 16 REMARK 465 MET A 17 REMARK 465 GLU A 18 REMARK 465 LYS A 19 REMARK 465 SER A 20 REMARK 465 LYS A 21 REMARK 465 ALA A 22 REMARK 465 THR A 23 REMARK 465 PRO A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 ARG A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 LYS A 399 REMARK 465 HIS A 400 REMARK 465 GLU A 401 REMARK 465 ILE A 402 REMARK 465 ASP A 403 REMARK 465 ARG A 404 REMARK 465 MET A 405 REMARK 465 THR A 406 REMARK 465 LEU A 407 REMARK 465 THR A 408 REMARK 465 MET A 409 REMARK 465 ALA A 410 REMARK 465 GLU A 476 REMARK 465 VAL A 477 REMARK 465 ASN A 478 REMARK 465 ALA A 479 REMARK 465 ALA A 480 REMARK 465 ASP A 481 REMARK 465 ALA A 482 REMARK 465 PHE A 483 REMARK 465 ASP A 484 REMARK 465 ILE A 485 REMARK 465 GLY A 486 REMARK 465 SER A 487 REMARK 465 PHE A 488 REMARK 465 ASP A 489 REMARK 465 GLU A 490 REMARK 465 GLU A 491 REMARK 465 GLN A 546 REMARK 465 LEU A 547 REMARK 465 GLY A 548 REMARK 465 HIS A 549 REMARK 465 GLU A 550 REMARK 465 GLU A 551 REMARK 465 GLY A 569 REMARK 465 ASN A 570 REMARK 465 PRO A 571 REMARK 465 PHE A 572 REMARK 465 LEU A 573 REMARK 465 THR A 574 REMARK 465 GLN A 575 REMARK 465 LEU A 657 REMARK 465 VAL A 658 REMARK 465 GLN A 659 REMARK 465 ARG A 660 REMARK 465 VAL A 661 REMARK 465 PRO A 662 REMARK 465 LYS A 663 REMARK 465 MET A 664 REMARK 465 LYS A 665 REMARK 465 ASN A 666 REMARK 465 LYS A 667 REMARK 465 PRO A 668 REMARK 465 ARG A 669 REMARK 465 ALA A 670 REMARK 465 PRO A 671 REMARK 465 VAL A 672 REMARK 465 VAL A 673 REMARK 465 GLU A 674 REMARK 465 LEU A 675 REMARK 465 SER A 676 REMARK 465 LYS A 677 REMARK 465 VAL A 678 REMARK 465 PRO A 679 REMARK 465 LEU A 680 REMARK 465 ILE A 681 REMARK 465 GLN A 682 REMARK 465 ARG A 683 REMARK 465 GLY A 684 REMARK 465 SER A 685 REMARK 465 ALA A 686 REMARK 465 ASN A 687 REMARK 465 GLY A 688 REMARK 465 LEU A 689 REMARK 465 G B 54 REMARK 465 G B 55 REMARK 465 A B 56 REMARK 465 G B 57 REMARK 465 A B 58 REMARK 465 G B 59 REMARK 465 A B 60 REMARK 465 A B 61 REMARK 465 A B 62 REMARK 465 C B 63 REMARK 465 U B 64 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G B 53 C5' C4' O4' C3' O3' C2' O2' REMARK 470 G B 53 C1' N9 C8 N7 C5 C6 O6 REMARK 470 G B 53 N1 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 53 44.75 -97.75 REMARK 500 PHE A 71 -74.90 -72.41 REMARK 500 HIS A 75 -84.92 -98.52 REMARK 500 LYS A 94 40.22 -100.09 REMARK 500 CYS A 120 -12.83 80.11 REMARK 500 SER A 121 76.16 -67.37 REMARK 500 HIS A 122 119.06 -162.85 REMARK 500 HIS A 194 -79.68 -104.40 REMARK 500 ILE A 197 51.55 -145.65 REMARK 500 ASP A 250 99.29 -68.85 REMARK 500 SER A 258 -47.20 -136.70 REMARK 500 ASP A 265 22.77 -141.94 REMARK 500 ARG A 316 -27.54 67.02 REMARK 500 SER A 334 -95.77 -94.28 REMARK 500 LYS A 345 115.66 -161.22 REMARK 500 ASP A 369 -141.11 -148.62 REMARK 500 SER A 371 -59.71 -18.64 REMARK 500 ARG A 386 -73.57 -129.70 REMARK 500 PRO A 390 -94.41 -66.04 REMARK 500 HIS A 394 1.14 -157.92 REMARK 500 THR A 396 -57.94 -177.86 REMARK 500 LYS A 397 -156.19 -144.80 REMARK 500 ASP A 415 48.80 -101.22 REMARK 500 LEU A 429 52.54 -109.23 REMARK 500 CYS A 439 -78.83 -127.46 REMARK 500 SER A 455 72.11 -114.68 REMARK 500 LEU A 456 118.13 -163.73 REMARK 500 GLN A 464 44.54 70.80 REMARK 500 THR A 493 62.98 -115.66 REMARK 500 THR A 524 -87.15 -129.92 REMARK 500 PHE A 526 -68.36 1.34 REMARK 500 ILE A 560 -64.38 -100.70 REMARK 500 GLU A 593 36.60 -76.93 REMARK 500 PRO A 597 90.64 -46.53 REMARK 500 GLN A 598 -71.17 -48.25 REMARK 500 LEU A 601 111.47 -164.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 690 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 335 OD2 REMARK 620 2 U B 50 OP1 115.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 690 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UZS RELATED DB: PDB REMARK 900 STRUCTURE OF THE C13.28 RNA APTAMER BOUND TO THE G PROTEIN-COUPLED REMARK 900 RECEPTOR KINASE 2-HETEROTRIMERIC G PROTEIN BETA 1 AND GAMMA 2 REMARK 900 SUBUNIT COMPLEX DBREF 3UZT A 1 689 UNP P21146 ARBK1_BOVIN 1 689 DBREF 3UZT B 47 64 PDB 3UZT 3UZT 47 64 SEQADV 3UZT ALA A 670 UNP P21146 SER 670 ENGINEERED MUTATION SEQRES 1 A 689 MET ALA ASP LEU GLU ALA VAL LEU ALA ASP VAL SER TYR SEQRES 2 A 689 LEU MET ALA MET GLU LYS SER LYS ALA THR PRO ALA ALA SEQRES 3 A 689 ARG ALA SER LYS LYS ILE LEU LEU PRO GLU PRO SER ILE SEQRES 4 A 689 ARG SER VAL MET GLN LYS TYR LEU GLU ASP ARG GLY GLU SEQRES 5 A 689 VAL THR PHE GLU LYS ILE PHE SER GLN LYS LEU GLY TYR SEQRES 6 A 689 LEU LEU PHE ARG ASP PHE CYS LEU LYS HIS LEU GLU GLU SEQRES 7 A 689 ALA LYS PRO LEU VAL GLU PHE TYR GLU GLU ILE LYS LYS SEQRES 8 A 689 TYR GLU LYS LEU GLU THR GLU GLU GLU ARG LEU VAL CYS SEQRES 9 A 689 SER ARG GLU ILE PHE ASP THR TYR ILE MET LYS GLU LEU SEQRES 10 A 689 LEU ALA CYS SER HIS PRO PHE SER LYS SER ALA ILE GLU SEQRES 11 A 689 HIS VAL GLN GLY HIS LEU VAL LYS LYS GLN VAL PRO PRO SEQRES 12 A 689 ASP LEU PHE GLN PRO TYR ILE GLU GLU ILE CYS GLN ASN SEQRES 13 A 689 LEU ARG GLY ASP VAL PHE GLN LYS PHE ILE GLU SER ASP SEQRES 14 A 689 LYS PHE THR ARG PHE CYS GLN TRP LYS ASN VAL GLU LEU SEQRES 15 A 689 ASN ILE HIS LEU THR MET ASN ASP PHE SER VAL HIS ARG SEQRES 16 A 689 ILE ILE GLY ARG GLY GLY PHE GLY GLU VAL TYR GLY CYS SEQRES 17 A 689 ARG LYS ALA ASP THR GLY LYS MET TYR ALA MET LYS CYS SEQRES 18 A 689 LEU ASP LYS LYS ARG ILE LYS MET LYS GLN GLY GLU THR SEQRES 19 A 689 LEU ALA LEU ASN GLU ARG ILE MET LEU SER LEU VAL SER SEQRES 20 A 689 THR GLY ASP CYS PRO PHE ILE VAL CYS MET SER TYR ALA SEQRES 21 A 689 PHE HIS THR PRO ASP LYS LEU SER PHE ILE LEU ASP LEU SEQRES 22 A 689 MET ASN GLY GLY ASP LEU HIS TYR HIS LEU SER GLN HIS SEQRES 23 A 689 GLY VAL PHE SER GLU ALA ASP MET ARG PHE TYR ALA ALA SEQRES 24 A 689 GLU ILE ILE LEU GLY LEU GLU HIS MET HIS ASN ARG PHE SEQRES 25 A 689 VAL VAL TYR ARG ASP LEU LYS PRO ALA ASN ILE LEU LEU SEQRES 26 A 689 ASP GLU HIS GLY HIS VAL ARG ILE SER ASP LEU GLY LEU SEQRES 27 A 689 ALA CYS ASP PHE SER LYS LYS LYS PRO HIS ALA SER VAL SEQRES 28 A 689 GLY THR HIS GLY TYR MET ALA PRO GLU VAL LEU GLN LYS SEQRES 29 A 689 GLY VAL ALA TYR ASP SER SER ALA ASP TRP PHE SER LEU SEQRES 30 A 689 GLY CYS MET LEU PHE LYS LEU LEU ARG GLY HIS SER PRO SEQRES 31 A 689 PHE ARG GLN HIS LYS THR LYS ASP LYS HIS GLU ILE ASP SEQRES 32 A 689 ARG MET THR LEU THR MET ALA VAL GLU LEU PRO ASP SER SEQRES 33 A 689 PHE SER PRO GLU LEU ARG SER LEU LEU GLU GLY LEU LEU SEQRES 34 A 689 GLN ARG ASP VAL ASN ARG ARG LEU GLY CYS LEU GLY ARG SEQRES 35 A 689 GLY ALA GLN GLU VAL LYS GLU SER PRO PHE PHE ARG SER SEQRES 36 A 689 LEU ASP TRP GLN MET VAL PHE LEU GLN LYS TYR PRO PRO SEQRES 37 A 689 PRO LEU ILE PRO PRO ARG GLY GLU VAL ASN ALA ALA ASP SEQRES 38 A 689 ALA PHE ASP ILE GLY SER PHE ASP GLU GLU ASP THR LYS SEQRES 39 A 689 GLY ILE LYS LEU LEU ASP SER ASP GLN GLU LEU TYR ARG SEQRES 40 A 689 ASN PHE PRO LEU THR ILE SER GLU ARG TRP GLN GLN GLU SEQRES 41 A 689 VAL ALA GLU THR VAL PHE ASP THR ILE ASN ALA GLU THR SEQRES 42 A 689 ASP ARG LEU GLU ALA ARG LYS LYS THR LYS ASN LYS GLN SEQRES 43 A 689 LEU GLY HIS GLU GLU ASP TYR ALA LEU GLY LYS ASP CYS SEQRES 44 A 689 ILE MET HIS GLY TYR MET SER LYS MET GLY ASN PRO PHE SEQRES 45 A 689 LEU THR GLN TRP GLN ARG ARG TYR PHE TYR LEU PHE PRO SEQRES 46 A 689 ASN ARG LEU GLU TRP ARG GLY GLU GLY GLU ALA PRO GLN SEQRES 47 A 689 SER LEU LEU THR MET GLU GLU ILE GLN SER VAL GLU GLU SEQRES 48 A 689 THR GLN ILE LYS GLU ARG LYS CYS LEU LEU LEU LYS ILE SEQRES 49 A 689 ARG GLY GLY LYS GLN PHE VAL LEU GLN CYS ASP SER ASP SEQRES 50 A 689 PRO GLU LEU VAL GLN TRP LYS LYS GLU LEU ARG ASP ALA SEQRES 51 A 689 TYR ARG GLU ALA GLN GLN LEU VAL GLN ARG VAL PRO LYS SEQRES 52 A 689 MET LYS ASN LYS PRO ARG ALA PRO VAL VAL GLU LEU SER SEQRES 53 A 689 LYS VAL PRO LEU ILE GLN ARG GLY SER ALA ASN GLY LEU SEQRES 1 B 18 C C A U A C G G G A G A G SEQRES 2 B 18 A A A C U HET MG A 690 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ HELIX 1 1 GLU A 36 SER A 38 5 3 HELIX 2 2 ILE A 39 ARG A 50 1 12 HELIX 3 3 THR A 54 GLN A 61 1 8 HELIX 4 4 GLN A 61 LEU A 73 1 13 HELIX 5 5 ALA A 79 LYS A 94 1 16 HELIX 6 6 THR A 97 ILE A 113 1 17 HELIX 7 7 SER A 125 LYS A 138 1 14 HELIX 8 8 PHE A 146 GLY A 159 1 14 HELIX 9 9 GLY A 159 GLU A 167 1 9 HELIX 10 10 SER A 168 ASN A 183 1 16 HELIX 11 11 LYS A 224 LYS A 230 1 7 HELIX 12 12 GLY A 232 SER A 247 1 16 HELIX 13 13 ASP A 278 GLY A 287 1 10 HELIX 14 14 SER A 290 ARG A 311 1 22 HELIX 15 15 THR A 353 MET A 357 5 5 HELIX 16 16 SER A 370 ARG A 386 1 17 HELIX 17 17 SER A 418 LEU A 429 1 12 HELIX 18 18 GLY A 443 GLU A 449 1 7 HELIX 19 19 SER A 450 ARG A 454 5 5 HELIX 20 20 ASP A 457 GLN A 464 1 8 HELIX 21 21 SER A 501 ARG A 507 5 7 HELIX 22 22 ILE A 513 GLU A 523 1 11 HELIX 23 23 VAL A 525 LYS A 545 1 21 HELIX 24 24 THR A 602 GLU A 604 5 3 HELIX 25 25 SER A 636 GLN A 655 1 20 SHEET 1 A 5 PHE A 191 ILE A 196 0 SHEET 2 A 5 GLU A 204 LYS A 210 -1 O ARG A 209 N SER A 192 SHEET 3 A 5 MET A 216 ASP A 223 -1 O TYR A 217 N CYS A 208 SHEET 4 A 5 LYS A 266 ASP A 272 -1 O LEU A 271 N ALA A 218 SHEET 5 A 5 MET A 257 HIS A 262 -1 N TYR A 259 O ILE A 270 SHEET 1 B 2 VAL A 313 VAL A 314 0 SHEET 2 B 2 CYS A 340 ASP A 341 -1 O CYS A 340 N VAL A 314 SHEET 1 C 2 ILE A 323 LEU A 325 0 SHEET 2 C 2 VAL A 331 ILE A 333 -1 O ARG A 332 N LEU A 324 SHEET 1 D 3 MET A 561 MET A 565 0 SHEET 2 D 3 ARG A 579 LEU A 583 -1 O PHE A 581 N GLY A 563 SHEET 3 D 3 LEU A 588 ARG A 591 -1 O GLU A 589 N TYR A 582 SHEET 1 E 3 ILE A 606 GLU A 610 0 SHEET 2 E 3 CYS A 619 ILE A 624 -1 O LYS A 623 N GLN A 607 SHEET 3 E 3 GLN A 629 GLN A 633 -1 O LEU A 632 N LEU A 620 LINK OD2 ASP A 335 MG MG A 690 1555 1555 1.90 LINK MG MG A 690 OP1 U B 50 1555 1555 2.02 SITE 1 AC1 2 ASP A 335 U B 50 CRYST1 113.346 139.719 60.949 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008823 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016407 0.00000