HEADER OXIDOREDUCTASE 08-DEC-11 3V0S TITLE CRYSTAL STRUCTURE OF PERAKINE REDUCTASE, FOUNDER MEMBER OF A NOVEL AKR TITLE 2 SUBFAMILY WITH UNIQUE CONFORMATIONAL CHANGES DURING NADPH BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERAKINE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RAUVOLFIA SERPENTINA; SOURCE 3 ORGANISM_COMMON: DEVILPEPPER; SOURCE 4 ORGANISM_TAXID: 4060; SOURCE 5 GENE: PR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PERAKINE REDUCTASE, AKR SUPERFAMILY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.SUN,Y.CHEN,C.RAJENDRAN,S.PANJIKAR,U.MUELLER,M.WANG,C.ROSENTHAL, AUTHOR 2 R.MINDNICH,T.M.PENNING,J.STOECKIGT REVDAT 3 08-NOV-23 3V0S 1 REMARK SEQADV LINK REVDAT 2 17-JUL-13 3V0S 1 JRNL REVDAT 1 22-FEB-12 3V0S 0 JRNL AUTH L.SUN,Y.CHEN,C.RAJENDRAN,U.MUELLER,S.PANJIKAR,M.WANG, JRNL AUTH 2 R.MINDNICH,C.ROSENTHAL,T.M.PENNING,J.STOCKIGT JRNL TITL CRYSTAL STRUCTURE OF PERAKINE REDUCTASE, FOUNDING MEMBER OF JRNL TITL 2 A NOVEL ALDO-KETO REDUCTASE (AKR) SUBFAMILY THAT UNDERGOES JRNL TITL 3 UNIQUE CONFORMATIONAL CHANGES DURING NADPH BINDING. JRNL REF J.BIOL.CHEM. V. 287 11213 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22334702 JRNL DOI 10.1074/JBC.M111.335521 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 36288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8211 - 4.1691 0.99 2929 154 0.2028 0.2139 REMARK 3 2 4.1691 - 3.3094 1.00 2792 148 0.1700 0.1879 REMARK 3 3 3.3094 - 2.8911 1.00 2725 142 0.1725 0.1810 REMARK 3 4 2.8911 - 2.6268 0.99 2706 143 0.1630 0.2104 REMARK 3 5 2.6268 - 2.4385 0.99 2713 143 0.1635 0.2092 REMARK 3 6 2.4385 - 2.2947 0.99 2657 140 0.1689 0.2088 REMARK 3 7 2.2947 - 2.1798 0.99 2656 140 0.1753 0.2331 REMARK 3 8 2.1798 - 2.0849 0.99 2681 141 0.1716 0.2092 REMARK 3 9 2.0849 - 2.0047 0.99 2666 141 0.1737 0.2146 REMARK 3 10 2.0047 - 1.9355 0.99 2634 139 0.1957 0.2392 REMARK 3 11 1.9355 - 1.8750 0.98 2605 137 0.2161 0.2734 REMARK 3 12 1.8750 - 1.8214 0.98 2619 138 0.2465 0.2725 REMARK 3 13 1.8214 - 1.7734 0.80 2089 110 0.2930 0.3420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 45.36 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15520 REMARK 3 B22 (A**2) : 0.15520 REMARK 3 B33 (A**2) : -0.31040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2316 REMARK 3 ANGLE : 1.367 3143 REMARK 3 CHIRALITY : 0.071 354 REMARK 3 PLANARITY : 0.008 390 REMARK 3 DIHEDRAL : 13.421 863 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1:85) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3629 7.9057 24.4407 REMARK 3 T TENSOR REMARK 3 T11: 0.0833 T22: 0.1288 REMARK 3 T33: 0.0844 T12: 0.0134 REMARK 3 T13: 0.0076 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.0503 L22: 0.0271 REMARK 3 L33: 0.0507 L12: 0.0248 REMARK 3 L13: -0.0405 L23: -0.0376 REMARK 3 S TENSOR REMARK 3 S11: -0.0590 S12: 0.0197 S13: -0.0584 REMARK 3 S21: -0.0076 S22: 0.0132 S23: -0.0320 REMARK 3 S31: 0.0713 S32: -0.0149 S33: -0.0029 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 86:100) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0006 13.9739 3.7036 REMARK 3 T TENSOR REMARK 3 T11: 0.1670 T22: 0.2878 REMARK 3 T33: 0.1076 T12: 0.0228 REMARK 3 T13: 0.0061 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: -0.0001 L22: 0.0001 REMARK 3 L33: 0.0001 L12: 0.0002 REMARK 3 L13: -0.0002 L23: 0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: 0.0022 S13: -0.0194 REMARK 3 S21: -0.0526 S22: 0.0142 S23: 0.0283 REMARK 3 S31: 0.0137 S32: -0.0043 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 101:173) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3652 17.3448 19.9352 REMARK 3 T TENSOR REMARK 3 T11: -0.0460 T22: 0.2267 REMARK 3 T33: 0.1346 T12: 0.0204 REMARK 3 T13: -0.0178 T23: 0.0667 REMARK 3 L TENSOR REMARK 3 L11: 0.0177 L22: 0.0136 REMARK 3 L33: 0.0337 L12: -0.0113 REMARK 3 L13: -0.0010 L23: -0.0135 REMARK 3 S TENSOR REMARK 3 S11: 0.0216 S12: 0.0552 S13: 0.0459 REMARK 3 S21: -0.0317 S22: 0.0144 S23: 0.0822 REMARK 3 S31: 0.0219 S32: -0.1418 S33: 0.0178 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 174:258) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7512 25.3597 16.1667 REMARK 3 T TENSOR REMARK 3 T11: -0.0170 T22: 0.2415 REMARK 3 T33: 0.1255 T12: 0.0093 REMARK 3 T13: -0.0196 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 0.0087 L22: 0.0207 REMARK 3 L33: 0.0247 L12: -0.0061 REMARK 3 L13: 0.0040 L23: -0.0075 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: 0.1105 S13: 0.0658 REMARK 3 S21: -0.0058 S22: 0.0180 S23: -0.0088 REMARK 3 S31: -0.0311 S32: 0.0930 S33: -0.0053 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 259:282) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0105 20.5695 22.5013 REMARK 3 T TENSOR REMARK 3 T11: 0.0275 T22: 0.1689 REMARK 3 T33: 0.1240 T12: 0.0212 REMARK 3 T13: -0.0009 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.0095 L22: 0.0017 REMARK 3 L33: 0.0345 L12: -0.0038 REMARK 3 L13: -0.0172 L23: 0.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: 0.0002 S13: 0.0105 REMARK 3 S21: 0.0023 S22: -0.0286 S23: -0.0034 REMARK 3 S31: 0.0109 S32: 0.0157 S33: -0.0224 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 283:310) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4468 23.4171 23.6247 REMARK 3 T TENSOR REMARK 3 T11: 0.0625 T22: 0.1201 REMARK 3 T33: 0.1392 T12: -0.0008 REMARK 3 T13: -0.0233 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.0201 L22: 0.0054 REMARK 3 L33: 0.0101 L12: 0.0092 REMARK 3 L13: -0.0058 L23: -0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0618 S12: 0.0330 S13: 0.0358 REMARK 3 S21: -0.0033 S22: -0.0297 S23: -0.0354 REMARK 3 S31: -0.0191 S32: 0.0482 S33: -0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 328:336) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6637 29.8015 9.2851 REMARK 3 T TENSOR REMARK 3 T11: 0.1683 T22: 0.2993 REMARK 3 T33: 0.2520 T12: 0.0332 REMARK 3 T13: -0.0040 T23: 0.1209 REMARK 3 L TENSOR REMARK 3 L11: 0.0126 L22: 0.0019 REMARK 3 L33: 0.0014 L12: -0.0002 REMARK 3 L13: -0.0028 L23: -0.0010 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.0037 S13: -0.0004 REMARK 3 S21: -0.0027 S22: 0.0020 S23: -0.0215 REMARK 3 S31: -0.0204 S32: 0.0117 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37054 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1PZ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.15200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.07600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.07600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 140.15200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 ASP A 26 REMARK 465 TYR A 27 REMARK 465 ASN A 28 REMARK 465 ASP A 29 REMARK 465 ALA A 30 REMARK 465 LEU A 31 REMARK 465 SER A 220 REMARK 465 LEU A 221 REMARK 465 PRO A 222 REMARK 465 GLU A 223 REMARK 465 ASN A 224 REMARK 465 SER A 225 REMARK 465 VAL A 226 REMARK 465 LEU A 227 REMARK 465 THR A 228 REMARK 465 SER A 229 REMARK 465 HIS A 230 REMARK 465 PRO A 231 REMARK 465 ARG A 232 REMARK 465 PHE A 233 REMARK 465 VAL A 234 REMARK 465 GLY A 235 REMARK 465 GLU A 236 REMARK 465 ASN A 237 REMARK 465 LEU A 238 REMARK 465 GLU A 239 REMARK 465 LYS A 240 REMARK 465 ASN A 241 REMARK 465 LYS A 242 REMARK 465 GLN A 243 REMARK 465 ILE A 244 REMARK 465 LEU A 311 REMARK 465 ASP A 312 REMARK 465 GLU A 313 REMARK 465 VAL A 314 REMARK 465 ALA A 315 REMARK 465 GLY A 316 REMARK 465 GLU A 317 REMARK 465 SER A 318 REMARK 465 ILE A 319 REMARK 465 HIS A 320 REMARK 465 GLU A 321 REMARK 465 VAL A 322 REMARK 465 ILE A 323 REMARK 465 ALA A 324 REMARK 465 VAL A 325 REMARK 465 THR A 326 REMARK 465 ASN A 327 REMARK 465 LYS A 337 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 41 OE1 GLN A 73 1.41 REMARK 500 HZ3 LYS A 284 O HOH A 849 1.49 REMARK 500 HE ARG A 164 O HOH A 785 1.49 REMARK 500 HH11 ARG A 247 O HOH A 792 1.59 REMARK 500 O HOH A 801 O HOH A 868 1.85 REMARK 500 O HOH A 879 O HOH A 888 1.88 REMARK 500 O HOH A 721 O HOH A 892 1.89 REMARK 500 NZ LYS A 284 O HOH A 849 1.89 REMARK 500 O HOH A 878 O HOH A 885 1.90 REMARK 500 O HOH A 788 O HOH A 791 1.91 REMARK 500 NH1 ARG A 247 O HOH A 792 1.99 REMARK 500 OH TYR A 246 O HOH A 789 2.01 REMARK 500 O HOH A 632 O HOH A 669 2.01 REMARK 500 OE1 GLU A 12 O HOH A 778 2.02 REMARK 500 O HOH A 715 O HOH A 739 2.03 REMARK 500 O HOH A 874 O HOH A 875 2.04 REMARK 500 O HOH A 717 O HOH A 818 2.04 REMARK 500 O HOH A 622 O HOH A 669 2.04 REMARK 500 O HOH A 549 O HOH A 622 2.04 REMARK 500 O HOH A 555 O HOH A 781 2.05 REMARK 500 O HOH A 736 O HOH A 737 2.06 REMARK 500 O HOH A 855 O HOH A 863 2.06 REMARK 500 O HOH A 803 O HOH A 804 2.09 REMARK 500 O HOH A 812 O HOH A 833 2.10 REMARK 500 O HOH A 742 O HOH A 837 2.11 REMARK 500 O HOH A 745 O HOH A 856 2.13 REMARK 500 NZ LYS A 41 OE1 GLN A 73 2.17 REMARK 500 N TRP A 328 O HOH A 811 2.18 REMARK 500 O HOH A 777 O HOH A 787 2.19 REMARK 500 O HOH A 728 O HOH A 889 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 744 O HOH A 744 5555 1.67 REMARK 500 O HOH A 794 O HOH A 794 4555 1.84 REMARK 500 O HOH A 848 O HOH A 848 5555 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATR A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V0T RELATED DB: PDB REMARK 900 RELATED ID: 3V0U RELATED DB: PDB DBREF 3V0S A 1 337 UNP Q3L181 Q3L181_RAUSE 1 337 SEQADV 3V0S TRP A 213 UNP Q3L181 ALA 213 ENGINEERED MUTATION SEQRES 1 A 337 MET PRO ARG VAL LYS LEU GLY THR GLN GLY LEU GLU VAL SEQRES 2 A 337 SER LYS LEU GLY PHE GLY CYS MET GLY LEU SER GLY ASP SEQRES 3 A 337 TYR ASN ASP ALA LEU PRO GLU GLU GLN GLY ILE ALA VAL SEQRES 4 A 337 ILE LYS GLU ALA PHE ASN CYS GLY ILE THR PHE PHE ASP SEQRES 5 A 337 THR SER ASP ILE TYR GLY GLU ASN GLY SER ASN GLU GLU SEQRES 6 A 337 LEU LEU GLY LYS ALA LEU LYS GLN LEU PRO ARG GLU MLZ SEQRES 7 A 337 ILE GLN VAL GLY THR LYS PHE GLY ILE HIS GLU ILE GLY SEQRES 8 A 337 PHE SER GLY VAL LYS ALA M3L GLY THR PRO ASP TYR VAL SEQRES 9 A 337 ARG SER CYS CYS GLU ALA SER LEU LYS ARG LEU ASP VAL SEQRES 10 A 337 ASP TYR ILE ASP LEU PHE TYR ILE HIS ARG ILE ASP THR SEQRES 11 A 337 THR VAL PRO ILE GLU ILE THR MET GLY GLU LEU MLY MLZ SEQRES 12 A 337 LEU VAL GLU GLU GLY LYS ILE MLZ TYR VAL GLY LEU SER SEQRES 13 A 337 GLU ALA SER PRO ASP THR ILE ARG ARG ALA HIS ALA VAL SEQRES 14 A 337 HIS PRO VAL THR ALA LEU GLN ILE GLU TYR SER LEU TRP SEQRES 15 A 337 THR ARG ASP ILE GLU ASP GLU ILE VAL PRO LEU CYS ARG SEQRES 16 A 337 GLN LEU GLY ILE GLY ILE VAL PRO TYR SER PRO ILE GLY SEQRES 17 A 337 ARG GLY LEU PHE TRP GLY LYS ALA ILE LYS GLU SER LEU SEQRES 18 A 337 PRO GLU ASN SER VAL LEU THR SER HIS PRO ARG PHE VAL SEQRES 19 A 337 GLY GLU ASN LEU GLU LYS ASN LYS GLN ILE TYR TYR ARG SEQRES 20 A 337 ILE GLU ALA LEU SER GLN LYS HIS GLY CYS THR PRO VAL SEQRES 21 A 337 GLN LEU ALA LEU ALA TRP VAL LEU HIS GLN GLY GLU ASP SEQRES 22 A 337 VAL VAL PRO ILE PRO GLY THR THR LYS ILE LYS ASN LEU SEQRES 23 A 337 HIS ASN ASN VAL GLY ALA LEU LYS VAL M3L LEU THR LYS SEQRES 24 A 337 GLU ASP LEU LYS GLU ILE SER ASP ALA VAL PRO LEU ASP SEQRES 25 A 337 GLU VAL ALA GLY GLU SER ILE HIS GLU VAL ILE ALA VAL SEQRES 26 A 337 THR ASN TRP LYS PHE ALA ASN THR PRO PRO LEU LYS MODRES 3V0S MLZ A 78 LYS N-METHYL-LYSINE MODRES 3V0S M3L A 98 LYS N-TRIMETHYLLYSINE MODRES 3V0S MLY A 142 LYS N-DIMETHYL-LYSINE MODRES 3V0S MLZ A 143 LYS N-METHYL-LYSINE MODRES 3V0S MLZ A 151 LYS N-METHYL-LYSINE MODRES 3V0S M3L A 296 LYS N-TRIMETHYLLYSINE HET MLZ A 78 24 HET M3L A 98 31 HET MLY A 142 11 HET MLZ A 143 10 HET MLZ A 151 10 HET M3L A 296 12 HET ATR A 401 31 HETNAM MLZ N-METHYL-LYSINE HETNAM M3L N-TRIMETHYLLYSINE HETNAM MLY N-DIMETHYL-LYSINE HETNAM ATR 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE FORMUL 1 MLZ 3(C7 H16 N2 O2) FORMUL 1 M3L 2(C9 H21 N2 O2 1+) FORMUL 1 MLY C8 H18 N2 O2 FORMUL 2 ATR C10 H16 N5 O13 P3 FORMUL 3 HOH *392(H2 O) HELIX 1 1 MET A 21 SER A 24 5 4 HELIX 2 2 GLU A 33 CYS A 46 1 14 HELIX 3 3 GLY A 61 LYS A 72 1 12 HELIX 4 4 GLN A 73 LEU A 74 5 2 HELIX 5 5 PRO A 75 ILE A 79 5 5 HELIX 6 6 THR A 100 ASP A 116 1 17 HELIX 7 7 PRO A 133 GLU A 147 1 15 HELIX 8 8 SER A 159 HIS A 170 1 12 HELIX 9 9 ARG A 184 ASP A 188 5 5 HELIX 10 10 GLU A 189 GLY A 198 1 10 HELIX 11 11 ILE A 207 GLU A 219 1 13 HELIX 12 12 TYR A 246 HIS A 255 1 10 HELIX 13 13 THR A 258 HIS A 269 1 12 HELIX 14 14 LYS A 282 ALA A 292 1 11 HELIX 15 15 LEU A 293 VAL A 295 5 3 HELIX 16 16 THR A 298 ALA A 308 1 11 SHEET 1 A 2 ARG A 3 LYS A 5 0 SHEET 2 A 2 GLU A 12 SER A 14 -1 O VAL A 13 N VAL A 4 SHEET 1 B 7 PHE A 18 GLY A 19 0 SHEET 2 B 7 PHE A 50 ASP A 52 1 O ASP A 52 N PHE A 18 SHEET 3 B 7 GLN A 80 PHE A 85 1 O GLY A 82 N PHE A 51 SHEET 4 B 7 ILE A 120 ILE A 125 1 O TYR A 124 N THR A 83 SHEET 5 B 7 ILE A 150 SER A 156 1 O GLY A 154 N PHE A 123 SHEET 6 B 7 ALA A 174 GLU A 178 1 O GLN A 176 N LEU A 155 SHEET 7 B 7 GLY A 200 TYR A 204 1 O VAL A 202 N LEU A 175 SHEET 1 C 2 ILE A 87 GLY A 91 0 SHEET 2 C 2 GLY A 94 ALA A 97 -1 O LYS A 96 N GLU A 89 LINK C GLU A 77 N MLZ A 78 1555 1555 1.32 LINK C MLZ A 78 N ILE A 79 1555 1555 1.32 LINK C ALA A 97 N M3L A 98 1555 1555 1.33 LINK C M3L A 98 N GLY A 99 1555 1555 1.33 LINK C LEU A 141 N MLY A 142 1555 1555 1.33 LINK C MLY A 142 N MLZ A 143 1555 1555 1.32 LINK C MLZ A 143 N LEU A 144 1555 1555 1.33 LINK C ILE A 150 N MLZ A 151 1555 1555 1.34 LINK C MLZ A 151 N TYR A 152 1555 1555 1.34 LINK C VAL A 295 N M3L A 296 1555 1555 1.33 LINK C M3L A 296 N LEU A 297 1555 1555 1.33 SITE 1 AC1 17 SER A 205 PRO A 206 ILE A 207 GLY A 208 SITE 2 AC1 17 LEU A 211 PRO A 278 GLY A 279 THR A 280 SITE 3 AC1 17 THR A 281 ASN A 285 ASN A 288 ASN A 289 SITE 4 AC1 17 HOH A 542 HOH A 549 HOH A 600 HOH A 650 SITE 5 AC1 17 HOH A 660 CRYST1 55.199 55.199 210.228 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018116 0.010459 0.000000 0.00000 SCALE2 0.000000 0.020919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004757 0.00000